Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 5.1e-249 864.0 446 100.0
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 5.1e-249 864.0 446 100.0
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 4.0e-222 774.6 446 91.3
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 1.1e-163 580.5 483 73.3
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 3.4e-128 462.6 525 59.2
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 3.3e-99 366.3 541 48.4
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 2.2e-95 353.6 522 50.4
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 6.9e-89 332.0 544 46.3
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 9.4e-86 321.6 539 45.3
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 1.7e-79 300.8 487 46.4
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 2.8e-74 283.5 553 41.4
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 1.4e-73 281.2 540 41.5
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 1.0e-71 275.0 579 39.2
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 9.4e-70 268.5 498 44.2
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 2.7e-69 266.9 567 39.2
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 3.0e-68 263.5 506 42.7
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 6.7e-68 262.3 509 42.4
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 7.4e-67 258.8 485 44.9
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 7.4e-67 258.8 485 44.9
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 7.0e-65 252.3 531 39.2
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 1.6e-64 251.1 489 41.9
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 1.5e-62 244.6 490 42.0
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 1.5e-62 244.6 490 42.0
A07p19920 Brassica napus HOM05D005710 ORTHO05D004657 3.6e-61 240.0 165 80.6
Sp7g02650 Schrenkiella parvula HOM05D005710 ORTHO05D004657 3.4e-59 233.4 294 58.5
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 2.8e-45 187.2 501 35.9
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 3.2e-41 173.7 284 45.8
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 8.6e-39 165.6 456 33.1
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 1.5e-38 164.9 475 31.6
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 5.6e-38 162.9 529 33.1
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 7.3e-38 162.5 482 32.2
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 7.5e-35 152.5 430 32.6
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 1.3e-34 151.8 410 34.1
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 3.7e-34 150.2 448 33.3
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 4.9e-34 149.8 432 32.4
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 1.1e-33 148.7 440 33.2
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 1.4e-33 148.3 363 34.7
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 9.2e-33 145.6 446 31.4
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 1.6e-32 144.8 385 33.8
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 1.6e-32 144.8 372 35.8
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 2.0e-32 144.4 450 32.9
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 2.7e-32 144.1 375 34.9
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 6.0e-32 142.9 417 34.5
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 6.0e-32 142.9 367 34.3
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 2.3e-31 141.0 429 33.6
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 3.9e-31 140.2 386 33.2
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 3.3e-30 137.1 378 34.1
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 5.6e-30 136.3 337 33.2
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 7.3e-30 136.0 360 33.6
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 1.6e-29 134.8 415 32.8
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 2.8e-29 134.0 348 34.5
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 4.7e-29 133.3 353 33.4
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 8.1e-29 132.5 450 33.1
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 1.8e-28 131.3 335 34.9
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 2.3e-28 131.0 386 32.9
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 8.9e-28 129.0 437 32.3
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 1.2e-27 128.6 234 39.3
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 2.0e-27 127.9 385 33.5
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.3e-26 125.2 377 33.2
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 1.7e-26 124.8 358 32.7
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.7e-26 124.8 387 34.6
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 2.9e-26 124.0 285 35.4
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 1.1e-25 122.1 371 33.4
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 1.4e-25 121.7 255 37.3
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 2.4e-25 120.9 415 31.8
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 3.2e-25 120.6 424 32.1
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 5.4e-25 119.8 263 35.4
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 5.4e-25 119.8 363 33.9
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 7.1e-25 119.4 292 33.2
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 9.2e-25 119.0 407 31.7
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.6e-24 118.2 380 32.6
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 2.7e-24 117.5 234 38.9
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 3.5e-24 117.1 288 37.2
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 4.6e-24 116.7 427 30.4
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 6.0e-24 116.3 170 40.6
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 1.3e-23 115.2 338 35.5
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 3.0e-23 114.0 290 34.5
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 3.0e-23 114.0 399 32.3
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 3.0e-23 114.0 337 35.3
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 5.1e-23 113.2 366 30.1
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 5.1e-23 113.2 370 33.5
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 1.5e-22 111.7 364 31.6
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 1.5e-22 111.7 165 41.2
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 1.9e-22 111.3 381 30.7
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 2.5e-22 110.9 368 31.0
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 2.5e-22 110.9 377 30.5
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 3.3e-22 110.5 233 36.9
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 1.2e-21 108.6 432 29.9
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 2.1e-21 107.8 496 30.4
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 6.2e-21 106.3 372 30.4
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 1.8e-20 104.8 285 30.5
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 4.0e-20 103.6 365 31.0
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 1.2e-19 102.1 276 30.4
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 1.3e-18 98.6 180 38.9
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 1.3e-18 98.6 459 28.1
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 1.7e-18 98.2 203 36.0
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 1.4e-17 95.1 401 28.4
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 1.4e-17 95.1 383 29.8
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 2.4e-17 94.4 479 28.2
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 2.4e-17 94.4 393 28.5
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 2.4e-17 94.4 149 39.6
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 7.1e-17 92.8 193 34.7
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 9.2e-17 92.4 325 30.5
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 9.2e-17 92.4 484 26.4
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 3.5e-16 90.5 404 28.2
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 3.5e-16 90.5 426 28.4
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 6.0e-16 89.7 340 29.4
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 1.3e-15 88.6 150 36.7
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 2.3e-15 87.8 249 31.7
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 1.1e-14 85.5 362 28.2
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 1.5e-14 85.1 111 48.6
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 2.5e-14 84.3 321 30.2
Sp7g02640 Schrenkiella parvula HOM05D005710 ORTHO05D004657 4.3e-14 83.6 82 59.8
AL3G48400 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 1.2e-13 82.0 76 56.6
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 1.2e-13 82.0 327 29.7
BcaC06g30873 Brassica carinata HOM05D005710 ORTHO05D004657 1.6e-13 81.6 123 50.4
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 1.4e-12 78.6 104 46.2
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 1.2e-11 75.5 151 35.1
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 7.8e-08 62.8 122 36.9
BolC7t44342H Brassica oleracea HOM05D005710 ORTHO05D004657 5.6e-06 56.6 102 37.3


User provided reference genes

Program Settings