Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 4.7e-278 960.7 524 100.0
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 1.6e-273 945.7 528 97.9
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 1.3e-272 942.6 528 97.9
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 1.3e-251 872.8 530 89.4
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 3.3e-239 831.6 485 93.8
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 3.3e-239 831.6 485 93.8
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 3.8e-219 765.0 494 82.2
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 4.3e-199 698.4 549 76.9
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 2.8e-198 695.7 550 75.6
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 1.7e-195 686.4 545 76.1
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 8.7e-192 674.1 545 73.6
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 7.7e-180 634.4 484 75.0
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 4.1e-165 585.5 556 63.3
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.2e-142 510.0 529 57.1
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 4.3e-138 495.7 553 54.8
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 3.3e-130 469.5 429 60.1
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 1.4e-128 464.2 440 60.2
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 3.1e-128 463.0 445 58.9
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 3.1e-128 463.0 450 58.2
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 2.9e-126 456.4 412 61.2
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 6.4e-126 455.3 453 57.2
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 6.4e-126 455.3 454 57.0
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 6.4e-126 455.3 453 57.2
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 1.1e-125 454.5 457 57.1
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 2.3e-123 446.8 446 59.0
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 5.0e-123 445.7 418 58.6
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 9.9e-119 431.4 465 55.3
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 8.6e-115 418.3 348 65.2
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 4.1e-109 399.4 421 55.1
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 3.0e-107 393.3 481 49.5
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 6.6e-107 392.1 484 49.2
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 7.3e-106 388.7 519 46.4
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 8.1e-105 385.2 490 48.0
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 8.1e-105 385.2 512 48.0
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 2.4e-104 383.6 395 54.9
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 1.2e-103 381.3 518 46.7
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 1.5e-103 380.9 487 48.7
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 4.4e-103 379.4 544 45.6
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 2.2e-102 377.1 488 48.6
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 4.9e-102 375.9 494 48.6
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 6.4e-102 375.6 398 52.8
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 8.4e-102 375.2 509 46.8
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 3.2e-101 373.2 477 49.5
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 4.2e-101 372.9 442 50.5
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 7.1e-101 372.1 389 56.0
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 2.7e-100 370.2 471 48.8
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 6.0e-100 369.0 513 48.3
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.0e-100 369.0 463 48.6
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 6.0e-100 369.0 473 49.0
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.7e-99 367.5 435 49.9
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 1.7e-99 367.5 414 53.6
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 1.7e-99 367.5 486 46.7
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 5.1e-99 365.9 462 47.6
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 6.6e-99 365.5 498 45.8
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 1.5e-98 364.4 408 52.0
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 3.3e-98 363.2 434 51.8
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 3.3e-98 363.2 434 51.8
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 3.3e-98 363.2 494 44.5
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 5.6e-98 362.5 398 53.3
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 1.3e-97 361.3 507 46.4
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 1.6e-97 360.9 428 49.3
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.6e-97 360.9 392 52.0
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 2.1e-97 360.5 530 44.3
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 3.6e-97 359.8 410 52.0
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 8.1e-97 358.6 484 45.5
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 5.3e-96 355.9 462 48.1
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 9.0e-96 355.1 484 44.2
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 1.2e-95 354.8 396 52.0
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 1.2e-95 354.8 385 52.5
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 2.6e-95 353.6 414 48.1
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 3.4e-95 353.2 432 48.4
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 3.4e-95 353.2 393 49.4
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 1.3e-94 351.3 470 47.4
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 1.7e-94 350.9 395 51.6
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 2.9e-94 350.1 410 52.2
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 2.9e-94 350.1 397 49.1
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 4.9e-94 349.4 409 50.9
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 4.9e-94 349.4 408 51.7
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 8.4e-94 348.6 437 45.8
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 1.1e-93 348.2 500 45.8
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 1.2e-92 344.7 496 44.4
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 1.2e-92 344.7 395 51.4
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 2.1e-92 344.0 512 44.7
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 3.5e-92 343.2 485 46.2
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 6.0e-92 342.4 501 43.5
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.0e-91 341.7 388 49.5
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 1.0e-91 341.7 408 51.7
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 1.3e-91 341.3 474 45.8
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 1.8e-91 340.9 436 47.5
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 2.3e-91 340.5 484 45.9
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 3.0e-91 340.1 554 42.6
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 3.9e-91 339.7 562 41.3
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 2.5e-90 337.0 493 44.8
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.1e-89 334.0 397 47.9
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 2.1e-89 334.0 334 53.0
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 4.8e-89 332.8 397 50.6
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 6.2e-89 332.4 418 49.5
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 1.2e-87 328.2 440 44.8
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 1.2e-87 328.2 456 45.0
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 1.2e-87 328.2 383 48.3
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 2.0e-87 327.4 442 47.7
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 4.5e-87 326.2 486 44.0
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 4.5e-87 326.2 512 43.4
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 3.2e-85 320.1 373 51.7
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 3.2e-85 320.1 400 47.5
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 5.5e-85 319.3 481 44.1
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 2.7e-84 317.0 419 46.8
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 3.0e-83 313.5 341 51.9
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 1.9e-82 310.8 395 45.3
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 9.6e-82 308.5 380 46.6
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 3.1e-80 303.5 401 44.6
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 5.3e-80 302.8 491 42.2
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 1.3e-78 298.1 500 41.0
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 2.9e-78 297.0 432 42.1
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 1.4e-77 294.7 501 38.3
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 2.1e-76 290.8 496 39.7
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 6.3e-73 279.3 359 46.5
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 1.8e-72 277.7 365 44.7
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 5.3e-72 276.2 369 44.7
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 6.9e-72 275.8 385 43.1
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.2e-70 270.8 369 44.4
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 9.3e-69 265.4 318 47.5
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 3.0e-67 260.4 344 45.6
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 8.8e-67 258.8 433 38.8
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.9e-66 257.7 448 39.7
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.9e-62 243.8 279 49.5
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 4.7e-60 236.5 219 55.3
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.0e-59 235.3 291 50.9
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.7e-57 228.0 215 54.4
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.4e-56 224.9 299 46.2
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 1.5e-55 221.5 287 44.9
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 5.9e-55 219.5 411 36.0
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.7e-54 218.0 240 51.2
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.2e-52 211.8 234 51.3
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.2e-44 185.3 281 41.6
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 6.1e-44 183.0 233 45.5
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 6.1e-44 183.0 156 62.8
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 2.7e-39 167.5 476 31.5
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 3.3e-29 134.0 391 30.2
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 1.0e-27 129.0 208 38.0
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 4.0e-27 127.1 509 28.1
Nn8g40574 Nelumbo nucifera HOM05D002617 ORTHO05D006076 4.9e-25 120.2 121 47.9
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 4.5e-23 113.6 175 49.7
Pp3c8_12390 Physcomitrium patens HOM05D002617 ORTHO05D006076 5.0e-22 110.2 396 27.8
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 3.3e-21 107.5 191 42.4
SalBow1G4795 Salvia bowleyana HOM05D002617 ORTHO05D006076 9.8e-18 95.9 109 45.9
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 2.9e-17 94.4 165 40.6
CDE04G2372 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 4.9e-17 93.6 179 31.8
CSS0013506 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 1.6e-07 62.0 51 58.8
Lsat_1_v5_gn_8_136421 Lactuca sativa HOM05D002617 ORTHO05D048373 3.0e-06 57.8 74 47.3


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