Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 0.0e+00 1409.4 733 100.0
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 0.0e+00 1178.3 649 95.8
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 0.0e+00 1157.1 623 97.6
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 4.8e-305 1050.8 626 91.2
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 9.0e-304 1046.6 626 90.6
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 1.2e-276 956.4 649 81.7
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 5.8e-242 841.3 671 70.8
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 5.7e-189 665.2 696 57.8
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 4.6e-183 645.6 701 56.1
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 2.0e-178 630.2 688 55.5
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 1.7e-172 610.5 675 54.2
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 4.2e-168 595.9 577 58.4
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 6.5e-161 572.0 654 54.7
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 1.6e-143 514.2 686 47.4
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 4.3e-112 409.8 694 40.1
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 2.2e-108 397.5 710 39.4
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 7.8e-106 389.0 663 41.0
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 1.1e-104 385.2 687 36.8
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 1.5e-101 374.8 658 37.8
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 4.5e-101 373.2 652 38.2
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 1.1e-99 368.6 683 37.8
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 2.1e-98 364.4 669 36.8
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 7.9e-98 362.5 690 37.1
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 1.3e-97 361.7 714 36.7
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 2.3e-97 360.9 656 38.9
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.9e-96 357.8 644 36.8
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 4.3e-96 356.7 694 37.0
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 4.3e-96 356.7 633 38.9
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 9.6e-96 355.5 650 37.7
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 1.3e-95 355.1 644 36.6
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.3e-95 355.1 637 38.3
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 1.1e-94 352.1 677 37.1
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 7.6e-93 345.9 669 35.9
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 1.9e-91 341.3 660 36.4
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 1.2e-90 338.6 691 35.6
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 2.1e-90 337.8 698 34.8
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.0e-90 336.3 656 37.5
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 2.5e-88 330.9 676 35.9
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 5.6e-88 329.7 646 36.8
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 9.6e-88 328.9 665 36.8
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 1.6e-87 328.2 657 36.5
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 2.1e-87 327.8 660 34.5
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 6.2e-87 326.2 650 35.4
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 3.1e-86 323.9 668 36.1
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.2e-85 322.0 672 35.9
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 7.6e-85 319.3 676 35.2
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 2.5e-83 314.3 661 35.7
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 9.3e-83 312.4 622 36.5
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 2.1e-82 311.2 683 34.6
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 5.7e-80 303.1 692 34.5
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 2.2e-79 301.2 640 34.2
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 2.2e-79 301.2 660 34.8
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 3.7e-79 300.4 442 42.8
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 2.4e-78 297.7 655 35.9
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.5e-77 295.0 728 32.4
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 3.4e-77 293.9 650 34.0
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 3.4e-77 293.9 588 33.5
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 5.0e-76 290.0 693 32.6
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 4.2e-75 287.0 634 34.7
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 3.6e-74 283.9 688 33.3
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 3.3e-72 277.3 686 33.4
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 7.4e-72 276.2 422 40.0
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.3e-71 275.4 643 33.7
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 1.7e-71 275.0 680 32.8
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 1.7e-71 275.0 680 32.8
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 2.2e-71 274.6 715 31.5
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 2.0e-69 268.1 699 31.8
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 2.6e-69 267.7 668 33.1
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 2.6e-69 267.7 676 32.5
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.3e-68 265.4 657 32.4
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 5.0e-68 263.5 666 32.1
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.1e-66 258.1 459 39.0
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 5.1e-65 253.4 530 35.3
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 6.7e-65 253.1 530 35.3
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 3.3e-64 250.8 598 34.3
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 2.2e-63 248.1 576 33.9
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 6.3e-63 246.5 591 34.2
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 5.3e-62 243.4 706 30.6
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 1.5e-61 241.9 709 30.5
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.1e-58 231.5 666 30.0
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 3.6e-58 230.7 434 36.4
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 8.8e-57 226.1 645 30.9
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 2.6e-56 224.6 636 30.0
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 3.3e-56 224.2 523 32.3
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 2.8e-55 221.1 542 32.8
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 4.8e-55 220.3 652 29.6
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 7.0e-54 216.5 705 28.8
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 7.7e-53 213.0 627 31.9
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.0e-52 212.6 688 27.6
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 2.2e-52 211.5 637 29.7
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 3.8e-52 210.7 657 29.8
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 1.2e-50 205.7 639 28.6
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 2.7e-50 204.5 424 38.0
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 4.7e-50 203.8 515 30.9
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.7e-47 195.3 295 43.1
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 3.1e-46 191.0 674 27.7
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 1.9e-43 181.8 638 27.1
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 7.5e-40 169.9 315 40.6
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 2.7e-37 161.4 627 29.3
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.0e-33 149.4 294 35.7
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 1.0e-33 149.4 342 35.7
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 2.0e-32 145.2 312 34.0
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 2.6e-32 144.8 645 25.1
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 9.8e-32 142.9 627 27.1
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.3e-31 142.5 509 29.9
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.9e-27 128.6 312 30.4
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 2.6e-24 118.2 442 26.2
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 2.2e-23 115.2 458 25.5
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 3.3e-19 101.3 407 27.5
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 1.7e-15 89.0 331 25.7
BcaC07g39321 Brassica carinata HOM05D006730 ORTHO05D008189 1.1e-14 86.3 69 71.0
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 3.9e-12 77.8 97 47.4
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 6.6e-12 77.0 99 39.4
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 4.3e-11 74.3 153 32.7
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.6e-10 72.4 88 39.8
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 1.1e-06 59.7 615 20.0


User provided reference genes

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