Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 1.6e-36 155.6 78 100.0
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 1.6e-36 155.6 78 100.0
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.4e-32 142.5 75 92.0
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 6.8e-32 140.2 75 90.7
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 6.8e-32 140.2 75 90.7
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 8.8e-32 139.8 75 89.3
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 2.0e-31 138.7 78 91.0
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 4.1e-29 131.0 75 84.0
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 5.4e-29 130.6 75 85.3
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 5.4e-29 130.6 75 84.0
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 4.5e-28 127.5 75 81.3
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 1.7e-27 125.6 75 81.3
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 5.0e-27 124.0 75 82.7
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 2.5e-26 121.7 62 95.2
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 2.5e-26 121.7 62 95.2
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 2.5e-26 121.7 62 95.2
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 2.5e-26 121.7 62 95.2
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 1.0e-24 116.3 63 92.1
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 1.0e-24 116.3 62 91.9
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 1.0e-24 116.3 58 100.0
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 1.4e-24 115.9 62 91.9
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 5.2e-24 114.0 75 74.7
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 5.2e-24 114.0 75 73.3
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 6.8e-24 113.6 62 90.3
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 1.2e-23 112.8 74 71.6
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 1.5e-23 112.5 75 68.0
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 5.7e-23 110.5 75 68.0
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 5.7e-23 110.5 75 66.7
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.7e-22 109.0 75 65.3
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.7e-22 109.0 75 65.3
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 1.7e-22 109.0 75 68.0
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 1.7e-22 109.0 75 69.3
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.7e-22 109.0 75 68.0
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 3.7e-22 107.8 75 68.0
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 3.7e-22 107.8 75 69.3
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 3.7e-22 107.8 75 69.3
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 3.7e-22 107.8 75 66.7
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 3.7e-22 107.8 75 69.3
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 3.7e-22 107.8 75 69.3
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 4.9e-22 107.5 75 69.3
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 4.9e-22 107.5 75 66.7
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 4.9e-22 107.5 73 69.9
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 6.3e-22 107.1 75 69.3
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 6.3e-22 107.1 75 68.0
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 8.3e-22 106.7 75 68.0
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 8.3e-22 106.7 75 68.0
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.1e-21 106.3 75 68.0
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 1.1e-21 106.3 75 66.7
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 1.1e-21 106.3 75 66.7
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.4e-21 105.9 77 62.3
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.4e-21 105.9 75 66.7
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 1.4e-21 105.9 75 66.7
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 1.8e-21 105.5 75 66.7
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 1.8e-21 105.5 75 66.7
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.4e-21 105.1 75 68.0
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 2.4e-21 105.1 75 66.7
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 2.4e-21 105.1 75 68.0
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 3.1e-21 104.8 75 64.0
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 3.1e-21 104.8 75 66.7
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 3.1e-21 104.8 75 65.3
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 4.1e-21 104.4 73 65.8
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 5.4e-21 104.0 75 64.0
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 5.4e-21 104.0 75 66.7
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 7.0e-21 103.6 73 64.4
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 7.0e-21 103.6 75 66.7
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 7.0e-21 103.6 75 65.3
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 9.1e-21 103.2 75 62.7
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 9.1e-21 103.2 75 65.3
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 1.2e-20 102.8 75 64.0
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 1.2e-20 102.8 75 64.0
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 1.6e-20 102.4 75 64.0
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.6e-20 102.4 75 68.0
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 1.6e-20 102.4 75 68.0
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 2.0e-20 102.1 75 64.0
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 2.0e-20 102.1 75 68.0
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.0e-20 102.1 75 68.0
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 2.7e-20 101.7 73 65.8
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 2.7e-20 101.7 75 65.3
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.7e-20 101.7 75 68.0
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 4.5e-20 100.9 75 62.7
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 5.9e-20 100.5 75 64.0
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 1.0e-19 99.8 75 60.0
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.0e-19 99.8 75 61.3
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 1.0e-19 99.8 75 61.3
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.0e-19 99.8 75 61.3
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 1.0e-19 99.8 75 61.3
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 1.3e-19 99.4 75 62.7
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.7e-19 99.0 75 61.3
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 2.3e-19 98.6 75 64.0
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 2.9e-19 98.2 75 61.3
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 2.9e-19 98.2 75 60.0
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 2.9e-19 98.2 75 64.0
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 2.9e-19 98.2 75 62.7
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 3.8e-19 97.8 75 60.0
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 3.8e-19 97.8 75 61.3
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 5.0e-19 97.4 75 58.7
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.0e-19 97.4 75 60.0
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 5.0e-19 97.4 75 60.0
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 2.5e-18 95.1 74 62.2
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 3.3e-18 94.7 73 61.6
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 3.3e-18 94.7 75 57.3
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 5.5e-18 94.0 75 61.3
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.2e-17 92.8 88 58.0
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 1.6e-17 92.4 75 60.0
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 2.8e-17 91.7 73 58.9
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 2.3e-16 88.6 75 57.3
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 3.0e-16 88.2 98 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 4.0e-16 87.8 76 50.0
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 4.0e-16 87.8 69 56.5
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 5.2e-16 87.4 70 57.1
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 5.2e-16 87.4 73 57.5
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 5.2e-16 87.4 75 53.3
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 6.8e-16 87.0 73 56.2
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 8.9e-16 86.7 75 57.3
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 8.9e-16 86.7 73 56.2
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 8.9e-16 86.7 69 58.0
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.5e-15 85.9 73 54.8
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 2.6e-15 85.1 73 53.4
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.6e-15 85.1 68 55.9
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 2.6e-15 85.1 68 55.9
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 7.5e-15 83.6 104 46.2
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 7.5e-15 83.6 104 46.2
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 2.2e-14 82.0 62 64.5
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 2.2e-14 82.0 73 53.4
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 4.9e-14 80.9 80 50.0
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 6.3e-14 80.5 74 47.3
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 1.1e-13 79.7 73 49.3
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.4e-13 78.6 73 49.3
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 3.2e-13 78.2 59 61.0
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 2.7e-12 75.1 86 43.0
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 3.5e-12 74.7 75 44.0
BcaB06g26914 Brassica carinata HOM05D004238 ORTHO05D004934 6.6e-11 70.5 56 64.3
BcaB06g26915 Brassica carinata HOM05D004238 ORTHO05D004934 7.3e-10 67.0 51 66.7
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 8.0e-09 63.5 53 56.6
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 8.0e-09 63.5 54 61.1
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.8e-08 62.4 39 69.2
BcaC02g10475 Brassica carinata HOM05D004238 ORTHO05D004934 1.5e-07 59.3 39 71.8
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 2.6e-07 58.5 39 64.1
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 9.8e-07 56.6 52 51.9
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 1.3e-06 56.2 38 65.8


User provided reference genes

Program Settings