Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 1.1e-156 556.6 280 100.0
C06p16650 Brassica napus HOM05D028418 ORTHO05D024007 1.9e-68 263.5 131 99.2
BolC6t36866H Brassica oleracea HOM05D028418 ORTHO05D024007 1.9e-68 263.5 131 99.2
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.3e-56 224.2 119 92.4
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 1.3e-56 224.2 119 92.4
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 1.4e-55 220.7 119 89.9
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 1.8e-55 220.3 119 90.8
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 1.8e-55 220.3 119 90.8
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 2.4e-55 219.9 112 94.6
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 9.1e-55 218.0 119 87.4
BraA05t20594Z Brassica rapa HOM05D028418 ORTHO05D024007 2.7e-54 216.5 131 86.3
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 4.5e-54 215.7 119 87.4
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 7.7e-54 214.9 112 91.1
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 3.8e-53 212.6 119 84.9
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 1.5e-52 210.7 119 85.7
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.9e-52 210.3 119 84.0
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 1.8e-47 193.7 119 75.6
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 7.0e-47 191.8 112 78.6
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 4.7e-43 179.1 112 70.5
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 3.1e-42 176.4 112 69.6
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 8.9e-42 174.9 124 66.1
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 2.6e-41 173.3 112 67.9
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 2.6e-41 173.3 112 68.8
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 2.6e-41 173.3 112 68.8
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 3.4e-41 172.9 112 68.8
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 4.4e-41 172.6 152 56.6
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 4.4e-41 172.6 145 60.0
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 9.8e-41 171.4 111 67.6
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 2.2e-40 170.2 112 66.1
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 6.4e-40 168.7 152 53.3
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 8.3e-40 168.3 112 65.2
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 8.3e-40 168.3 150 57.3
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.1e-39 167.9 112 66.1
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 1.4e-39 167.5 151 55.6
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 1.4e-39 167.5 151 56.3
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 1.4e-39 167.5 112 66.1
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 1.9e-39 167.2 112 66.1
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 5.4e-39 165.6 115 64.3
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 5.4e-39 165.6 115 62.6
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 5.4e-39 165.6 180 50.0
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 7.0e-39 165.2 117 76.9
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 7.0e-39 165.2 117 76.9
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 7.0e-39 165.2 112 66.1
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 7.0e-39 165.2 112 64.3
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 7.0e-39 165.2 144 54.9
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 9.2e-39 164.9 115 63.5
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 9.2e-39 164.9 112 65.2
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 9.2e-39 164.9 115 63.5
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.2e-38 164.5 112 64.3
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 2.0e-38 163.7 180 49.4
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 2.0e-38 163.7 180 48.9
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 3.5e-38 162.9 180 49.4
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 4.6e-38 162.5 180 49.4
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 4.6e-38 162.5 112 63.4
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 4.6e-38 162.5 112 63.4
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 6.0e-38 162.2 139 55.4
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 7.8e-38 161.8 112 64.3
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.0e-37 161.4 146 52.7
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 1.0e-37 161.4 139 54.7
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 1.3e-37 161.0 112 64.3
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 1.3e-37 161.0 138 55.1
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 1.3e-37 161.0 151 53.0
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 1.7e-37 160.6 112 64.3
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.3e-37 160.2 123 58.5
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 2.3e-37 160.2 144 54.2
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 3.0e-37 159.8 150 53.3
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 3.9e-37 159.5 85 95.3
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 6.6e-37 158.7 135 54.8
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 6.6e-37 158.7 142 54.2
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 1.1e-36 157.9 160 51.9
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 1.5e-36 157.5 112 61.6
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 1.9e-36 157.1 121 58.7
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 2.5e-36 156.8 112 61.6
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 3.3e-36 156.4 112 60.7
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 3.3e-36 156.4 142 53.5
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 3.3e-36 156.4 142 54.9
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 5.6e-36 155.6 135 52.6
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 5.6e-36 155.6 159 50.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.6e-36 155.6 159 50.3
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 5.6e-36 155.6 159 50.3
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 9.5e-36 154.8 112 60.7
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 9.5e-36 154.8 112 60.7
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 1.2e-35 154.5 112 61.6
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 1.6e-35 154.1 152 50.0
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.6e-35 154.1 159 49.7
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.1e-35 153.7 142 52.8
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 2.8e-35 153.3 159 50.9
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 3.6e-35 152.9 112 61.6
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 3.6e-35 152.9 142 52.8
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 3.6e-35 152.9 142 54.2
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 6.2e-35 152.1 182 47.3
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 6.2e-35 152.1 182 47.8
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 1.1e-34 151.4 144 52.1
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.4e-34 151.0 112 61.6
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 1.8e-34 150.6 151 49.0
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 2.3e-34 150.2 115 58.3
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 2.3e-34 150.2 115 60.0
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 4.0e-34 149.4 112 61.6
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 5.2e-34 149.1 115 58.3
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 8.9e-34 148.3 112 57.1
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 4.4e-33 146.0 142 53.5
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 1.3e-32 144.4 162 46.9
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 2.9e-32 143.3 115 57.4
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 1.9e-31 140.6 170 47.1
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 3.2e-31 139.8 117 63.2
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 1.2e-30 137.9 154 58.4
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 8.9e-26 121.7 131 47.3
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 4.1e-23 112.8 66 86.4
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 5.4e-23 112.5 112 46.4
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 3.9e-21 106.3 112 48.2
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 1.5e-17 94.4 165 36.4
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 1.5e-17 94.4 104 43.3
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 2.6e-17 93.6 157 38.9
Zm00001eb431280 Zea mays HOM05D028418 ORTHO05D024007 3.2e-15 86.7 94 50.0
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 1.2e-14 84.7 62 61.3
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 8.1e-11 72.0 45 71.1
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 6.9e-10 68.9 62 53.2
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 1.2e-09 68.2 46 67.4
SGA_v2.0_scaffold69G23259 Striga asiatica HOM05D006664 ORTHO05D009007 1.5e-09 67.8 73 50.7
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 4.4e-09 66.2 45 68.9
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 7.6e-09 65.5 50 64.0
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 2.4e-07 60.5 45 62.2
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 4.2e-07 59.7 148 32.4
ClCG07G010890 Citrullus lanatus HOM05D023275 ORTHO05D025059 5.4e-07 59.3 102 37.3
BcaB04g18277 Brassica carinata HOM05D001003 ORTHO05D002734 2.1e-06 57.4 37 83.8
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 2.7e-06 57.0 38 71.1


User provided reference genes

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