Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44218 Brassica carinata HOM05D011788 ORTHO05D014339 3.8e-68 261.5 146 100.0
C06p16230 Brassica napus HOM05D011788 ORTHO05D014339 4.8e-63 244.6 144 97.2
BolC6t36820H Brassica oleracea HOM05D011788 ORTHO05D014339 4.8e-63 244.6 144 97.2
BraA05t20628Z Brassica rapa HOM05D011788 ORTHO05D014339 2.4e-62 242.3 144 95.1
BcaB02g10799 Brassica carinata HOM05D011788 ORTHO05D014339 1.2e-58 229.9 148 91.9
Thhalv10011398m.g Eutrema salsugineum HOM05D001067 ORTHO05D000876 1.2e-42 176.8 150 71.3
C03p93210 Brassica napus HOM05D011788 ORTHO05D014339 7.9e-42 174.1 144 74.3
BolC3t21619H Brassica oleracea HOM05D011788 ORTHO05D014339 5.1e-41 171.4 143 71.3
Sp1g41360 Schrenkiella parvula HOM05D001067 ORTHO05D000876 7.7e-37 157.5 150 63.3
AL1G63890 Arabidopsis lyrata HOM05D011788 ORTHO05D014339 1.0e-36 157.1 150 59.3
BcaC01g01566 Brassica carinata HOM05D011788 ORTHO05D014339 1.0e-36 157.1 118 78.0
AT1G55775 Arabidopsis thaliana HOM05D011788 ORTHO05D014339 2.9e-36 155.6 148 60.1
Carub.0001s4434 Capsella rubella HOM05D011788 ORTHO05D014339 8.8e-33 144.1 150 54.0
A08p00300 Brassica napus HOM05D001067 ORTHO05D000876 4.3e-32 141.7 127 70.9
CARHR045490 Cardamine hirsuta HOM05D011788 ORTHO05D014339 9.1e-30 134.0 144 55.6
CARHR045460 Cardamine hirsuta HOM05D011788 ORTHO05D014339 3.4e-29 132.1 158 51.9
Aa31LG10G410 Aethionema arabicum HOM05D011788 ORTHO05D014339 1.5e-24 116.7 142 49.3
THA.LOC104815685 Tarenaya hassleriana HOM05D011788 ORTHO05D000687 9.7e-24 114.0 154 50.6
Cfa016930 Carpinus fangiana HOM05D000913 ORTHO05D000687 6.1e-10 68.2 74 52.7
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 8.8e-09 64.3 66 59.1
Haze_09880 Corylus avellana HOM05D000913 ORTHO05D000687 9.7e-08 60.8 68 52.9
Haze_09886 Corylus avellana HOM05D001067 ORTHO05D000876 9.7e-08 60.8 66 57.6
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 9.7e-08 60.8 74 51.4
DCAR_019659 Daucus carota HOM05D000913 ORTHO05D000687 1.7e-07 60.1 64 51.6
QL08p002039 Quercus lobata HOM05D000913 ORTHO05D000687 2.8e-07 59.3 65 52.3
GSVIVG01026843001 Vitis vinifera HOM05D000913 ORTHO05D000687 3.7e-07 58.9 64 46.9
DCAR_019657 Daucus carota HOM05D000913 ORTHO05D000687 4.8e-07 58.5 73 47.9
DCAR_015686 Daucus carota HOM05D000913 ORTHO05D000687 6.3e-07 58.2 65 47.7
ECA236G4318 Erigeron canadensis HOM05D000913 ORTHO05D000687 6.3e-07 58.2 68 51.5
MBI14_g43020_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 6.3e-07 58.2 70 48.6
QL08p001958 Quercus lobata HOM05D000913 ORTHO05D000687 6.3e-07 58.2 64 53.1
Aqoxy7G02045 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 8.2e-07 57.8 73 50.7
Nn1g07601 Nelumbo nucifera HOM05D000913 ORTHO05D000687 8.2e-07 57.8 70 51.4
Atru.chr1.4053 Acer truncatum HOM05D000913 ORTHO05D000687 1.1e-06 57.4 60 53.3
DCAR_008754 Daucus carota HOM05D000913 ORTHO05D000687 1.4e-06 57.0 54 59.3
DCAR_021079 Daucus carota HOM05D000913 ORTHO05D000687 1.4e-06 57.0 62 50.0
Migut.E01774 Erythranthe guttata HOM05D000913 ORTHO05D000687 1.4e-06 57.0 65 52.3
HanXRQChr11g0329801 Helianthus annuus HOM05D000913 ORTHO05D000687 1.4e-06 57.0 68 47.1
MBI14_g16765_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.4e-06 57.0 73 50.7
BcaC05g30196 Brassica carinata HOM05D014993 ORTHO05D000687 1.8e-06 56.6 70 47.1
Cc02_g37590 Coffea canephora HOM05D000913 ORTHO05D000687 1.8e-06 56.6 64 46.9
MBI14_g17949_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 1.8e-06 56.6 70 47.1
CiPaw.03G195900 Carya illinoinensis HOM05D000913 ORTHO05D000687 2.4e-06 56.2 82 43.9
MBI15_g38739_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.4e-06 56.2 69 47.8
QL04p075609 Quercus lobata HOM05D000913 ORTHO05D000687 2.4e-06 56.2 82 47.6
Thecc.07G006400 Theobroma cacao HOM05D000913 ORTHO05D000687 2.4e-06 56.2 64 54.7
Atru.chr1.4051 Acer truncatum HOM05D000913 ORTHO05D000687 3.1e-06 55.8 64 50.0
CiPaw.11G208300 Carya illinoinensis HOM05D000913 ORTHO05D000687 3.1e-06 55.8 73 52.1
CiPaw.14G082800 Carya illinoinensis HOM05D000913 ORTHO05D000687 3.1e-06 55.8 73 52.1
HanXRQChr03g0081521 Helianthus annuus HOM05D000041 ORTHO05D000452 3.1e-06 55.8 64 51.6
MBI14_g16762_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 3.1e-06 55.8 73 49.3
Nn1g06060 Nelumbo nucifera HOM05D000913 ORTHO05D000687 3.1e-06 55.8 73 49.3
QL04p074171 Quercus lobata HOM05D000913 ORTHO05D000687 3.1e-06 55.8 65 49.2
QL04p075739 Quercus lobata HOM05D000913 ORTHO05D000687 3.1e-06 55.8 82 47.6
QL04p075755 Quercus lobata HOM05D000913 ORTHO05D000687 3.1e-06 55.8 82 47.6
QL08p002030 Quercus lobata HOM05D000913 ORTHO05D000687 3.1e-06 55.8 64 50.0
Thecc.07G019800 Theobroma cacao HOM05D000913 ORTHO05D000687 3.1e-06 55.8 64 50.0
Aqoxy4G01749 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 4.1e-06 55.5 73 47.9
CiPaw.10G022600 Carya illinoinensis HOM05D000913 ORTHO05D000687 4.1e-06 55.5 82 43.9
HanXRQChr01g0023431 Helianthus annuus HOM05D000913 ORTHO05D000687 4.1e-06 55.5 67 49.3
HanXRQChr01g0023451 Helianthus annuus HOM05D000913 ORTHO05D000687 4.1e-06 55.5 67 49.3
HanXRQChr04g0126321 Helianthus annuus HOM05D000913 ORTHO05D000687 4.1e-06 55.5 67 49.3
MBI14_g16764_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.1e-06 55.5 73 49.3
MBI14_g17948_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.1e-06 55.5 68 51.5
MBI14_g42478_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.1e-06 55.5 69 46.4
MBI14_g48110_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.1e-06 55.5 73 49.3
Medtr3g082250 Medicago truncatula HOM05D000913 ORTHO05D000687 4.1e-06 55.5 64 50.0
QL04p066360 Quercus lobata HOM05D000913 ORTHO05D000687 4.1e-06 55.5 77 48.1
Thecc.07G006200 Theobroma cacao HOM05D000913 ORTHO05D000687 4.1e-06 55.5 68 50.0
TPR.G27426 Trifolium pratense HOM05D000913 ORTHO05D000687 4.1e-06 55.5 64 46.9
Eucgr.F03666 Eucalyptus grandis HOM05D000913 ORTHO05D000687 5.3e-06 55.1 67 49.3
Nn7g37143 Nelumbo nucifera HOM05D000913 ORTHO05D000687 5.3e-06 55.1 67 49.3
Oeu049436.1 Olea europaea HOM05D000913 ORTHO05D000687 5.3e-06 55.1 62 50.0
Gorai.009G446400 Gossypium raimondii HOM05D000913 ORTHO05D000687 7.0e-06 54.7 64 50.0
Gorai.009G452900 Gossypium raimondii HOM05D000913 ORTHO05D000687 7.0e-06 54.7 71 42.3
MBI14_g37420_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 7.0e-06 54.7 69 47.8
MD11G1039200 Malus domestica HOM05D000913 ORTHO05D000687 7.0e-06 54.7 65 47.7
Psat5g105760 Pisum sativum HOM05D000913 ORTHO05D000687 7.0e-06 54.7 63 47.6
QL04p066294 Quercus lobata HOM05D000913 ORTHO05D000687 7.0e-06 54.7 82 46.3
QL04p075073 Quercus lobata HOM05D000913 ORTHO05D000687 7.0e-06 54.7 82 46.3
RcHm_v2.0_Chr5g0075291 Rosa chinensis HOM05D000913 ORTHO05D000687 7.0e-06 54.7 64 46.9
ECA236G0352 Erigeron canadensis HOM05D000913 ORTHO05D000687 9.1e-06 54.3 68 48.5
Glyma.09G016400 Glycine max HOM05D000913 ORTHO05D000687 9.1e-06 54.3 70 45.7
MBI16_g31487_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 9.1e-06 54.3 64 45.3
Oeu040052.1 Olea europaea HOM05D000913 ORTHO05D000687 9.1e-06 54.3 69 46.4
QL05p057732 Quercus lobata HOM05D000913 ORTHO05D000687 9.1e-06 54.3 82 46.3
TPR.G10472 Trifolium pratense HOM05D000913 ORTHO05D000687 9.1e-06 54.3 67 47.8
vmacro12050 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 9.1e-06 54.3 64 46.9


User provided reference genes

Program Settings