Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 7.5e-39 163.3 79 100.0
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 7.5e-39 163.3 79 100.0
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.9e-37 158.7 79 97.5
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.5e-26 122.5 73 75.3
BraA05t20644Z Brassica rapa HOM05D004137 ORTHO05D004804 1.2e-25 119.4 57 96.5
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 2.1e-25 118.6 76 69.7
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.6e-25 117.9 76 69.7
BcaB02g10824 Brassica carinata HOM05D004137 ORTHO05D004804 8.1e-25 116.7 79 75.9
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-24 116.3 72 72.2
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-24 116.3 72 72.2
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-24 116.3 72 72.2
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-24 116.3 72 72.2
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 1.1e-24 116.3 72 72.2
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.8e-24 115.5 76 68.4
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 7.6e-23 110.2 72 70.8
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 7.6e-23 110.2 76 64.5
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 8.4e-22 106.7 73 68.5
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-21 106.3 73 67.1
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 1.4e-21 105.9 69 69.6
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 1.4e-21 105.9 69 69.6
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 1.9e-21 105.5 73 67.1
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 9.3e-21 103.2 73 65.8
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.0e-19 99.8 72 61.1
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 7.3e-18 93.6 76 59.2
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 3.1e-16 88.2 69 56.5
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 3.8e-14 81.3 72 51.4
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 4.9e-14 80.9 69 50.7
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 4.9e-14 80.9 72 45.8
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 6.4e-14 80.5 69 49.3
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 8.4e-14 80.1 68 51.5
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.9e-13 79.0 70 52.9
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 3.2e-13 78.2 68 47.1
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 4.2e-13 77.8 72 44.4
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 5.4e-13 77.4 67 53.7
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 5.4e-13 77.4 67 53.7
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 1.2e-12 76.3 70 51.4
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 2.1e-12 75.5 74 48.6
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 2.7e-12 75.1 62 48.4
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.7e-12 75.1 69 49.3
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.7e-12 75.1 69 49.3
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 2.7e-12 75.1 69 46.4
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.7e-12 75.1 70 45.7
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 3.5e-12 74.7 69 47.8
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 4.6e-12 74.3 70 51.4
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 6.0e-12 73.9 68 44.1
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 6.0e-12 73.9 74 44.6
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.3e-11 72.8 69 47.8
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.3e-11 72.8 67 43.3
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 1.8e-11 72.4 69 49.3
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.8e-11 72.4 64 46.9
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.0e-11 71.6 73 43.8
CARHR088170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 5.1e-11 70.9 66 51.5
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 8.7e-11 70.1 68 44.1
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 8.7e-11 70.1 73 43.8
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.9e-10 68.9 64 46.9
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 1.9e-10 68.9 73 42.5
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.9e-10 68.9 64 48.4
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 2.5e-10 68.6 68 45.6
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 2.5e-10 68.6 73 41.1
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 2.5e-10 68.6 73 41.1
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 2.5e-10 68.6 70 50.0
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 2.5e-10 68.6 68 41.2
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 5.6e-10 67.4 60 51.7
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 5.6e-10 67.4 63 49.2
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 7.4e-10 67.0 70 48.6
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 9.6e-10 66.6 68 45.6
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.3e-09 66.2 65 40.0
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 1.3e-09 66.2 63 47.6
Sp3g11710 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.3e-09 66.2 63 49.2
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.3e-09 66.2 67 37.3
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 1.6e-09 65.9 68 39.7
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 1.6e-09 65.9 73 39.7
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 1.6e-09 65.9 68 41.2
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.8e-09 65.1 73 38.4
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 3.7e-09 64.7 62 43.5
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 4.8e-09 64.3 73 39.7
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 8.1e-09 63.5 68 38.2
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 8.1e-09 63.5 71 39.4
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 8.1e-09 63.5 69 43.5
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 1.1e-08 63.2 61 45.9
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.4e-08 62.8 68 38.2
AL3G25410 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.8e-08 62.4 65 46.2
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.8e-08 62.4 68 39.7
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 1.8e-08 62.4 68 39.7
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 4.0e-08 61.2 68 42.6
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 4.0e-08 61.2 69 40.6
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 4.0e-08 61.2 66 45.5
AT3G13500 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 5.3e-08 60.8 65 46.2
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 6.9e-08 60.5 63 39.7
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 6.9e-08 60.5 63 39.7
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 6.9e-08 60.5 81 35.8
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 9.0e-08 60.1 68 41.2
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 9.0e-08 60.1 73 39.7
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 9.0e-08 60.1 68 33.8
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 9.0e-08 60.1 68 35.3
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 9.0e-08 60.1 64 37.5
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.0e-08 60.1 63 39.7
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 1.2e-07 59.7 73 38.4
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-07 59.3 68 41.2
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.5e-07 59.3 73 35.6
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 2.6e-07 58.5 65 36.9
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 2.6e-07 58.5 63 38.1
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 2.6e-07 58.5 65 36.9
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 2.6e-07 58.5 63 38.1
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 2.6e-07 58.5 63 38.1
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 3.4e-07 58.2 75 34.7
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 4.5e-07 57.8 81 35.8
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 5.8e-07 57.4 84 39.3
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 7.6e-07 57.0 69 40.6
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 9.9e-07 56.6 71 39.4
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-06 56.2 65 36.9
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.7e-06 55.8 63 38.1
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 2.2e-06 55.5 63 38.1
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 2.2e-06 55.5 70 38.6
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 2.9e-06 55.1 73 38.4
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 2.9e-06 55.1 65 33.8
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.9e-06 55.1 69 39.1
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 2.9e-06 55.1 63 38.1
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.9e-06 55.1 69 39.1
Carub.0003s1297 Capsella rubella HOM05D004137 ORTHO05D004804 3.8e-06 54.7 66 45.5
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 4.9e-06 54.3 68 39.7


User provided reference genes

Program Settings