Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 3.9e-98 361.7 213 100.0
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.1e-91 339.3 213 94.8
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 3.0e-90 335.5 213 90.6
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 8.7e-90 334.0 185 94.1
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.0e-85 320.5 186 90.3
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 7.1e-84 314.3 185 88.1
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 2.7e-83 312.4 187 90.4
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 7.9e-83 310.8 162 96.9
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.3e-82 310.1 187 87.7
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 3.0e-82 308.9 185 87.0
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 3.7e-80 302.0 185 87.0
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 4.5e-78 295.0 158 94.3
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.0e-77 293.9 186 85.5
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 1.1e-76 290.4 147 98.6
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.1e-73 280.4 184 82.1
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 8.2e-72 274.2 145 94.5
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 7.7e-70 267.7 158 85.4
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 2.2e-64 249.6 179 73.2
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 6.3e-64 248.1 179 71.5
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.4e-63 246.9 180 71.7
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 2.4e-63 246.1 186 73.1
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 5.3e-63 245.0 186 69.4
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.2e-62 243.8 145 82.1
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.0e-62 243.0 184 69.0
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 5.9e-62 241.5 185 70.3
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 5.9e-62 241.5 185 70.3
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.7e-62 241.1 145 81.4
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 2.2e-61 239.6 184 69.6
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 2.2e-61 239.6 185 65.9
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.9e-61 239.2 190 67.4
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 5.0e-61 238.4 168 72.0
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 6.5e-61 238.0 183 66.1
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 8.5e-61 237.7 184 67.4
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 1.1e-60 237.3 189 68.8
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.1e-60 237.3 145 80.7
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 1.4e-60 236.9 186 68.8
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.4e-60 236.9 168 71.4
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 1.4e-60 236.9 147 76.9
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.4e-60 236.9 145 79.3
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 4.2e-60 235.3 185 65.9
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 4.2e-60 235.3 167 71.3
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 5.5e-60 235.0 167 72.5
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 5.5e-60 235.0 147 78.9
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 7.2e-60 234.6 190 65.8
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 7.2e-60 234.6 183 67.8
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 7.2e-60 234.6 145 78.6
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 7.2e-60 234.6 189 67.7
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 9.4e-60 234.2 185 67.0
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.2e-59 233.8 185 67.6
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.2e-59 233.8 186 67.2
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 1.2e-59 233.8 147 76.2
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.6e-59 233.4 145 77.9
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 1.6e-59 233.4 145 76.6
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 2.1e-59 233.0 145 79.3
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.7e-59 232.6 180 68.3
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.7e-59 231.9 186 66.7
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 6.1e-59 231.5 190 67.4
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 7.9e-59 231.1 176 68.8
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 1.4e-58 230.3 188 67.6
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.4e-58 230.3 185 68.1
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.4e-58 230.3 185 68.1
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 2.3e-58 229.6 145 78.6
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 3.9e-58 228.8 147 74.1
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 3.9e-58 228.8 198 61.1
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.9e-58 228.8 183 66.7
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 3.9e-58 228.8 183 66.7
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 3.9e-58 228.8 189 65.6
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 5.1e-58 228.4 185 67.6
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 8.8e-58 227.6 187 65.2
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.1e-57 227.3 148 76.4
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.1e-57 227.3 187 64.7
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 2.0e-57 226.5 183 66.7
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 2.0e-57 226.5 187 63.6
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 2.0e-57 226.5 187 65.8
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 2.6e-57 226.1 186 68.3
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 4.4e-57 225.3 183 66.7
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 4.4e-57 225.3 147 75.5
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 4.4e-57 225.3 142 74.6
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 4.4e-57 225.3 190 66.8
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 7.4e-57 224.6 168 69.0
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.3e-56 223.8 185 63.2
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 1.3e-56 223.8 179 65.4
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.2e-56 223.0 191 66.0
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.8e-56 222.6 139 86.3
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 2.8e-56 222.6 191 66.0
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 3.7e-56 222.2 146 75.3
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 3.7e-56 222.2 146 75.3
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 3.7e-56 222.2 182 63.2
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 4.8e-56 221.9 185 63.8
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 6.3e-56 221.5 145 73.8
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 8.2e-56 221.1 187 65.2
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 8.2e-56 221.1 143 75.5
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 1.1e-55 220.7 187 63.1
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.1e-55 220.7 147 73.5
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 1.4e-55 220.3 155 72.3
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 1.4e-55 220.3 155 72.3
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.4e-55 220.3 145 74.5
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.4e-55 220.3 147 73.5
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 1.8e-55 219.9 189 64.6
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 2.4e-55 219.5 186 61.3
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 9.1e-55 217.6 182 62.1
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.6e-54 216.9 186 64.5
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 2.0e-54 216.5 147 73.5
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.0e-53 214.2 145 73.1
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 2.2e-53 213.0 143 72.7
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.9e-53 212.6 145 74.5
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 5.0e-53 211.8 197 59.4
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 6.5e-53 211.5 157 69.4
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 2.5e-52 209.5 161 65.2
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 4.2e-52 208.8 184 62.5
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 5.5e-52 208.4 145 71.0
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.6e-51 206.8 194 59.3
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.6e-51 206.8 184 59.8
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 1.0e-50 204.1 142 66.2
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-50 203.8 185 63.2
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-50 203.8 185 63.2
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-50 203.8 185 63.2
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 3.0e-50 202.6 143 69.2
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 5.2e-50 201.8 145 65.5
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 6.7e-50 201.4 194 57.7
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 8.8e-50 201.1 139 71.2
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 1.1e-49 200.7 185 62.2
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 2.0e-49 199.9 187 55.6
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 5.7e-49 198.4 123 78.0
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 4.8e-48 195.3 125 74.4
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.8e-47 193.4 123 78.0
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 3.1e-47 192.6 201 58.2
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 3.1e-47 192.6 201 58.2
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 4.1e-47 192.2 186 57.5
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 5.3e-47 191.8 134 70.9
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.0e-46 189.9 152 60.5
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 2.7e-46 189.5 163 58.9
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.1e-44 184.1 145 66.9
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-44 183.0 201 55.7
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 4.2e-44 182.2 191 50.8
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 1.6e-43 180.3 173 58.4
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 8.0e-43 177.9 179 57.5
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 1.8e-42 176.8 144 60.4
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.0e-41 173.3 143 59.4
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 9.8e-41 171.0 181 52.5
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 2.4e-39 166.4 146 62.3
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.1e-39 166.0 140 62.1
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 9.1e-39 164.5 106 76.4
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 1.6e-38 163.7 106 76.4
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-35 154.1 96 74.0
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 3.0e-34 149.4 212 48.1
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 5.7e-33 145.2 146 56.2
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 2.8e-32 142.9 123 63.4
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 8.3e-32 141.4 87 78.2
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 8.3e-32 141.4 92 73.9
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 7.0e-31 138.3 82 81.7
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 4.7e-27 125.6 106 63.2
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 4.9e-24 115.5 182 42.3
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 2.7e-22 109.8 96 54.2
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 5.9e-22 108.6 140 40.7
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.1e-19 100.1 114 53.5
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 1.2e-17 94.4 63 69.8
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 7.0e-15 85.1 181 32.6
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.0e-13 81.3 49 79.6
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 5.6e-12 75.5 77 53.2
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 8.1e-11 71.6 158 29.1
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 3.4e-09 66.2 53 64.2
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 1.6e-06 57.4 33 72.7


User provided reference genes

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