Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 3.4e-147 525.0 271 100.0
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 1.0e-87 327.4 280 66.4
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 1.4e-71 273.9 406 46.8
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 4.0e-63 245.7 327 50.2
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 5.2e-63 245.4 475 41.9
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 8.8e-63 244.6 515 38.4
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 5.7e-62 241.9 313 50.8
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.3e-61 240.7 347 47.8
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 8.3e-61 238.0 509 39.3
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 3.1e-60 236.1 317 49.5
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 4.1e-60 235.7 317 49.5
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 9.1e-60 234.6 504 38.5
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.6e-59 233.8 121 94.2
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.6e-59 233.8 121 94.2
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 2.7e-59 233.0 502 37.8
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 5.0e-58 228.8 502 36.9
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 1.5e-57 227.3 139 83.5
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 1.3e-53 214.2 349 45.3
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 1.0e-47 194.5 139 69.1
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 3.7e-45 186.0 139 67.6
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.3e-42 177.6 139 62.6
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 2.3e-42 176.8 139 64.0
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 4.3e-41 172.6 139 63.3
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 5.6e-41 172.2 139 62.6
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 9.5e-41 171.4 139 61.2
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 1.2e-40 171.0 137 61.3
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 1.2e-40 171.0 138 60.9
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 1.6e-40 170.6 139 61.9
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 1.6e-40 170.6 139 61.9
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 2.8e-40 169.9 139 61.2
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 3.6e-40 169.5 139 61.9
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 6.2e-40 168.7 139 59.7
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 8.0e-40 168.3 139 61.9
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 8.0e-40 168.3 139 61.2
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.1e-39 167.9 139 59.7
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 1.1e-39 167.9 139 61.9
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 1.1e-39 167.9 139 61.2
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 1.1e-39 167.9 139 61.2
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 1.8e-39 167.2 139 59.0
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.8e-39 167.2 139 59.7
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 2.3e-39 166.8 138 59.4
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 4.0e-39 166.0 139 59.7
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 5.2e-39 165.6 138 60.1
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 6.8e-39 165.2 139 60.4
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 6.8e-39 165.2 139 60.4
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 6.8e-39 165.2 139 60.4
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 6.8e-39 165.2 139 59.0
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 8.9e-39 164.9 139 61.2
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.2e-38 164.5 138 61.6
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 1.5e-38 164.1 139 60.4
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 2.0e-38 163.7 139 59.0
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 3.4e-38 162.9 137 58.4
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 3.4e-38 162.9 139 59.7
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 9.8e-38 161.4 139 58.3
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 1.7e-37 160.6 139 59.0
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 1.7e-37 160.6 139 59.0
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 1.7e-37 160.6 139 57.6
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 2.2e-37 160.2 139 59.7
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 2.9e-37 159.8 139 58.3
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 3.7e-37 159.5 139 59.0
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 3.7e-37 159.5 139 57.6
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 3.7e-37 159.5 139 58.3
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 4.9e-37 159.1 139 58.3
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.9e-37 159.1 144 57.6
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 4.9e-37 159.1 139 58.3
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 6.4e-37 158.7 139 59.0
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 6.4e-37 158.7 139 59.7
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 6.4e-37 158.7 139 57.6
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 8.3e-37 158.3 139 59.0
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 8.3e-37 158.3 139 57.6
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 8.3e-37 158.3 139 57.6
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 3.2e-36 156.4 139 56.8
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 5.4e-36 155.6 90 84.4
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 5.4e-36 155.6 139 56.8
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 5.4e-36 155.6 139 56.8
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 9.2e-36 154.8 139 56.8
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 9.2e-36 154.8 140 58.6
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 1.2e-35 154.5 139 56.8
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 4.6e-35 152.5 139 58.3
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 7.8e-35 151.8 139 59.0
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 7.8e-35 151.8 134 58.2
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.7e-34 150.6 307 38.1
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 2.3e-34 150.2 139 57.6
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.9e-34 149.4 139 54.7
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 1.1e-33 147.9 139 56.1
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 1.1e-33 147.9 165 49.1
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 1.1e-33 147.9 139 56.8
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.5e-33 147.5 139 57.6
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.3e-33 146.4 139 54.7
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 9.5e-33 144.8 140 56.4
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 9.5e-33 144.8 139 56.1
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 1.2e-32 144.4 139 56.8
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 6.2e-32 142.1 139 55.4
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 8.1e-32 141.7 132 53.8
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 1.4e-31 141.0 129 55.8
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 2.3e-31 140.2 122 60.7
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 3.1e-31 139.8 164 47.0
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 6.8e-31 138.7 139 51.8
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 9.9e-30 134.8 139 51.8
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 1.7e-29 134.0 139 53.2
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 4.9e-29 132.5 118 56.8
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 1.1e-28 131.3 139 51.8
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 1.1e-28 131.3 139 49.6
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 1.6e-27 127.5 226 40.3
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 4.6e-27 125.9 94 63.8
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 6.6e-26 122.1 112 55.4
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 5.6e-25 119.0 139 46.0
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 5.6e-25 119.0 139 46.0
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 7.3e-25 118.6 93 59.1
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 3.1e-23 113.2 112 54.5
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 8.9e-23 111.7 113 54.9
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 3.4e-22 109.8 112 49.1
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 2.8e-16 90.1 62 71.0
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 4.7e-16 89.4 69 63.8
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 8.1e-16 88.6 83 56.6
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 1.1e-15 88.2 64 60.9
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 9.0e-15 85.1 62 64.5
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 9.9e-14 81.6 131 32.8
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 1.4e-12 77.8 82 43.9
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 3.2e-12 76.6 127 33.1
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 5.4e-12 75.9 128 33.6
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 2.7e-11 73.6 58 60.3
BcaC08g44106 Brassica carinata HOM05D002505 ORTHO05D006559 4.8e-08 62.8 63 61.9
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 9.0e-07 58.5 32 78.1
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 2.0e-06 57.4 32 75.0


User provided reference genes

Program Settings