Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 5.8e-39 163.7 79 100.0
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 7.1e-29 130.2 69 91.3
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 7.1e-29 130.2 69 91.3
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 1.1e-26 122.9 71 81.7
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 1.1e-26 122.9 71 81.7
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 1.1e-26 122.9 71 81.7
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 2.5e-26 121.7 71 81.7
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 2.5e-26 121.7 71 81.7
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 9.6e-26 119.8 66 84.8
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 4.7e-25 117.5 71 77.5
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 4.7e-25 117.5 66 86.4
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 6.2e-25 117.1 67 85.1
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 2.4e-24 115.2 71 74.6
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 2.4e-24 115.2 71 74.6
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 5.2e-24 114.0 71 76.1
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 6.9e-24 113.6 71 74.6
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 6.9e-24 113.6 71 74.6
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 9.0e-24 113.2 72 75.0
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 2.6e-23 111.7 71 73.2
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 4.4e-23 110.9 69 73.9
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 1.1e-21 106.3 73 71.2
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 1.9e-21 105.5 69 72.5
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 5.4e-21 104.0 71 64.8
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 7.1e-21 103.6 71 64.8
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 7.1e-21 103.6 71 67.6
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 1.2e-20 102.8 69 66.7
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.6e-20 102.4 69 69.6
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 2.1e-20 102.1 69 66.7
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 2.1e-20 102.1 69 71.0
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 2.1e-20 102.1 71 63.4
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 2.1e-20 102.1 69 63.8
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.5e-20 101.3 69 68.1
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 4.6e-20 100.9 64 71.9
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 4.6e-20 100.9 69 66.7
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 4.6e-20 100.9 71 63.4
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 4.6e-20 100.9 69 63.8
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 6.0e-20 100.5 63 73.0
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 6.0e-20 100.5 71 64.8
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 1.0e-19 99.8 69 65.2
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 1.0e-19 99.8 69 68.1
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.0e-19 99.8 69 63.8
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 1.3e-19 99.4 69 63.8
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.3e-19 99.4 69 63.8
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 1.3e-19 99.4 69 65.2
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 1.7e-19 99.0 63 73.0
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 1.7e-19 99.0 65 64.6
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 1.7e-19 99.0 69 68.1
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 2.3e-19 98.6 69 65.2
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.3e-19 98.6 63 73.0
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 2.3e-19 98.6 69 65.2
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 3.0e-19 98.2 69 65.2
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 3.0e-19 98.2 68 64.7
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 3.0e-19 98.2 69 65.2
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 3.9e-19 97.8 69 63.8
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 3.9e-19 97.8 69 63.8
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 3.9e-19 97.8 69 65.2
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 5.1e-19 97.4 63 65.1
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 6.6e-19 97.1 69 62.3
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.1e-18 96.3 69 63.8
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.1e-18 96.3 69 62.3
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 1.1e-18 96.3 69 65.2
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 1.1e-18 96.3 69 62.3
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 1.5e-18 95.9 69 62.3
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.9e-18 95.5 69 62.3
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 2.5e-18 95.1 63 68.3
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 2.5e-18 95.1 68 60.3
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 2.5e-18 95.1 69 62.3
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 3.3e-18 94.7 69 62.3
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.3e-18 94.7 69 62.3
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 3.3e-18 94.7 69 62.3
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 3.3e-18 94.7 68 63.2
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 3.3e-18 94.7 69 60.9
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 4.3e-18 94.4 69 62.3
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 7.3e-18 93.6 71 59.2
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 9.6e-18 93.2 69 63.8
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 9.6e-18 93.2 68 63.2
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 1.3e-17 92.8 69 63.8
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 1.6e-17 92.4 69 60.9
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 1.6e-17 92.4 69 60.9
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 2.1e-17 92.0 70 62.9
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 2.1e-17 92.0 69 59.4
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 2.8e-17 91.7 69 60.9
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 2.8e-17 91.7 68 61.8
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 2.8e-17 91.7 68 61.8
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 2.8e-17 91.7 69 62.3
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 3.6e-17 91.3 70 61.4
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 3.6e-17 91.3 69 59.4
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 4.8e-17 90.9 69 59.4
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 4.8e-17 90.9 69 62.3
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 4.8e-17 90.9 78 56.4
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 8.1e-17 90.1 68 60.3
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 8.1e-17 90.1 68 63.2
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 8.1e-17 90.1 69 59.4
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 1.1e-16 89.7 77 58.4
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 1.4e-16 89.4 71 59.2
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 1.8e-16 89.0 69 59.4
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 3.1e-16 88.2 68 61.8
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 3.1e-16 88.2 69 58.0
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 4.0e-16 87.8 69 58.0
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 5.3e-16 87.4 69 58.0
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 5.3e-16 87.4 69 58.0
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 6.9e-16 87.0 69 58.0
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 9.0e-16 86.7 73 57.5
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 9.0e-16 86.7 68 60.3
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 1.5e-15 85.9 70 58.6
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 1.5e-15 85.9 69 59.4
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.6e-15 85.1 69 56.5
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 2.6e-15 85.1 68 60.3
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 3.4e-15 84.7 71 59.2
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 3.4e-15 84.7 69 58.0
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 5.8e-15 84.0 71 57.7
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 7.6e-15 83.6 70 54.3
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 7.6e-15 83.6 69 59.4
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 7.6e-15 83.6 63 60.3
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 7.6e-15 83.6 72 56.9
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 4.9e-14 80.9 74 52.7
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.4e-14 80.5 68 55.9
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 6.4e-14 80.5 68 55.9
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 8.4e-14 80.1 69 55.1
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 1.9e-13 79.0 70 57.1
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 4.2e-13 77.8 49 65.3
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 7.1e-13 77.0 73 52.1
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 5.1e-11 70.9 68 54.4
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 4.3e-10 67.8 74 50.0
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.4e-08 62.0 38 65.8
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 2.4e-08 62.0 45 62.2
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 1.2e-07 59.7 65 47.7


User provided reference genes

Program Settings