Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44045 Brassica carinata HOM05D002373 ORTHO05D008661 4.5e-175 617.8 320 100.0
BolC6t36626H Brassica oleracea HOM05D002373 ORTHO05D008661 1.7e-174 615.9 320 99.7
C06p14460 Brassica napus HOM05D002373 ORTHO05D008661 5.0e-174 614.4 320 99.4
A05p18620 Brassica napus HOM05D002373 ORTHO05D008661 1.8e-168 595.9 321 97.2
BcaB02g10929 Brassica carinata HOM05D002373 ORTHO05D005805 4.3e-165 584.7 319 95.0
Sp1g39670 Schrenkiella parvula HOM05D002373 ORTHO05D008661 5.2e-155 551.2 325 88.3
Thhalv10011660m.g Eutrema salsugineum HOM05D002373 ORTHO05D008661 3.7e-153 545.0 325 87.4
CARHR043340 Cardamine hirsuta HOM05D002373 ORTHO05D008661 6.4e-153 544.3 324 86.7
AL1G61480 Arabidopsis lyrata HOM05D002373 ORTHO05D008661 7.8e-151 537.3 324 85.8
Carub.0001s4228 Capsella rubella HOM05D002373 ORTHO05D008661 8.9e-147 523.9 324 84.0
AT1G53120 Arabidopsis thaliana HOM05D002373 ORTHO05D008661 2.0e-146 522.7 324 84.9
BraA05t20753Z Brassica rapa HOM05D002373 ORTHO05D008661 3.4e-146 521.9 277 97.1
Aa31LG10G2010 Aethionema arabicum HOM05D002373 ORTHO05D008661 1.9e-144 516.2 325 80.6
THA.LOC104810464 Tarenaya hassleriana HOM05D002373 ORTHO05D008661 4.6e-135 485.0 325 76.9
Thecc.07G090300 Theobroma cacao HOM05D002373 ORTHO05D008661 7.3e-125 451.1 328 71.6
Cpa.g.sc80.70 Carica papaya HOM05D002373 ORTHO05D008661 2.8e-124 449.1 324 70.4
Ciclev10008924m.g Citrus clementina HOM05D002373 ORTHO05D008661 2.6e-122 442.6 327 68.8
Gohir.A13G146100 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.7e-121 439.9 322 69.6
GSVIVG01014327001 Vitis vinifera HOM05D002373 ORTHO05D008661 1.7e-121 439.9 323 72.1
Gohir.D13G151000 Gossypium hirsutum HOM05D002373 ORTHO05D008661 1.1e-120 437.2 326 70.2
TAR624G1149 Trochodendron aralioides HOM05D002373 ORTHO05D008661 7.1e-120 434.5 322 70.8
COL.COLO4_27178 Corchorus olitorius HOM05D002373 ORTHO05D008661 3.5e-119 432.2 327 69.1
HanXRQChr12g0364201 Helianthus annuus HOM05D002373 ORTHO05D008661 1.8e-118 429.9 320 68.4
Actinidia35249 Actinidia chinensis HOM05D002373 ORTHO05D008661 3.0e-118 429.1 323 69.7
CSS0006904 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 8.7e-118 427.6 322 68.6
CANSAT56G3654 Cannabis sativa HOM05D002373 ORTHO05D008661 2.5e-117 426.0 324 68.2
DCAR_019560 Daucus carota HOM05D002373 ORTHO05D008661 1.3e-116 423.7 308 68.8
Potri.011G119800 Populus trichocarpa HOM05D002373 ORTHO05D008661 2.1e-116 422.9 331 68.6
FvH4_3g19840 Fragaria vesca HOM05D002373 ORTHO05D008661 2.8e-116 422.5 323 67.8
arahy.Tifrunner.gnm1.ann1.CVL1T8 Arachis hypogaea HOM05D002373 ORTHO05D008661 3.6e-116 422.2 314 67.8
ECA240G3063 Erigeron canadensis HOM05D002373 ORTHO05D008661 6.2e-116 421.4 293 71.0
arahy.Tifrunner.gnm1.ann1.D1WMTZ Arachis hypogaea HOM05D002373 ORTHO05D008661 8.1e-116 421.0 314 67.8
RcHm_v2.0_Chr5g0033281 Rosa chinensis HOM05D002373 ORTHO05D008661 8.1e-116 421.0 323 67.5
MD11G1252400 Malus domestica HOM05D002373 ORTHO05D008661 1.8e-115 419.9 325 68.3
FAN11G3740 Fragaria x ananassa HOM05D002373 ORTHO05D008661 2.4e-115 419.5 326 67.8
CsaV3_3G019460 Cucumis sativus L. HOM05D002373 ORTHO05D008661 3.1e-115 419.1 321 67.9
Lj3g0019501 Lotus japonicus HOM05D002373 ORTHO05D008661 6.9e-115 417.9 324 66.4
CSS0005109 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 9.0e-115 417.5 322 67.4
Sabra11G0104200 Salix brachista HOM05D002373 ORTHO05D008661 9.0e-115 417.5 271 76.0
MELO3C019408.2 Cucumis melo HOM05D002373 ORTHO05D008661 2.0e-114 416.4 309 68.9
Atru.BG.257.p Acer truncatum HOM05D002373 ORTHO05D008661 3.4e-114 415.6 254 79.5
Prupe.4G180500 Prunus persica HOM05D002373 ORTHO05D008661 9.9e-114 414.1 325 66.5
Sed0026190 Sechium edule HOM05D002373 ORTHO05D008661 9.9e-114 414.1 283 72.8
Atru.BG.152.p Acer truncatum HOM05D002373 ORTHO05D008661 1.7e-113 413.3 254 79.1
Lsat_1_v5_gn_9_97941 Lactuca sativa HOM05D002373 ORTHO05D008661 1.7e-113 413.3 315 68.3
FAN25G2634 Fragaria x ananassa HOM05D002373 ORTHO05D008661 2.2e-113 412.9 321 66.7
Lalb_Chr25g0286331 Lupinus albus HOM05D002373 ORTHO05D008661 8.4e-113 411.0 309 65.7
Glyma.12G224900 Glycine max HOM05D002373 ORTHO05D008661 1.4e-112 410.2 334 63.5
CAN.G213.9 Capsicum annuum HOM05D002373 ORTHO05D008661 1.9e-112 409.8 280 72.1
ClCG05G009320 Citrullus lanatus HOM05D002373 ORTHO05D008661 2.4e-112 409.5 340 65.0
Dinv20179 Davidia involucrata HOM05D002373 ORTHO05D008661 3.2e-112 409.1 291 71.1
Nn1g04122 Nelumbo nucifera HOM05D002373 ORTHO05D008661 4.2e-112 408.7 270 76.3
MBI06_g23077_MAGBIO Magnolia biondii HOM05D002373 ORTHO05D008661 1.2e-111 407.1 288 70.5
PGSC0003DMG400015321 Solanum tuberosum HOM05D002373 ORTHO05D008661 1.2e-111 407.1 328 64.9
Psat5g243920 Pisum sativum HOM05D002373 ORTHO05D008661 1.6e-111 406.8 307 66.8
Eucgr.F01146 Eucalyptus grandis HOM05D002373 ORTHO05D008661 2.1e-111 406.4 278 72.7
QL08p022081 Quercus lobata HOM05D002373 ORTHO05D008661 2.1e-111 406.4 329 62.3
TPR.G39017 Trifolium pratense HOM05D002373 ORTHO05D008661 2.1e-111 406.4 279 69.9
Lj1C842T3 Lonicera japonica HOM05D002373 ORTHO05D008661 3.5e-111 405.6 322 66.5
Ca_03504_v3 Cicer arietinum L. HOM05D002373 ORTHO05D008661 4.6e-111 405.2 320 62.8
VMungo1080G1315 Vigna mungo HOM05D002373 ORTHO05D008661 6.0e-111 404.8 327 63.9
Cfa020577 Carpinus fangiana HOM05D002373 ORTHO05D008661 7.9e-111 404.4 316 64.6
Medtr2g085340 Medicago truncatula HOM05D002373 ORTHO05D008661 7.9e-111 404.4 322 64.3
Sopen12g007190 Solanum pennellii HOM05D002373 ORTHO05D008661 1.8e-110 403.3 278 71.2
Solyc12g013870.3 Solanum lycopersicum HOM05D002373 ORTHO05D008661 6.7e-110 401.4 278 70.9
CiPaw.11G170200 Carya illinoinensis HOM05D002373 ORTHO05D008661 3.3e-109 399.1 343 61.8
Aqoxy1G02390 Aquilegia oxysepala HOM05D002373 ORTHO05D008661 5.6e-109 398.3 325 65.5
Phvul.002G286700 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 9.6e-109 397.5 323 63.8
Migut.H01944 Erythranthe guttata HOM05D002373 ORTHO05D008661 1.3e-108 397.1 322 63.7
vmacro09529 Vaccinium macrocarpon HOM05D002373 ORTHO05D008661 1.3e-108 397.1 270 74.8
PGR083G2563 Punica granatum HOM05D002373 ORTHO05D008661 1.6e-108 396.7 335 63.6
MSTRG.12905 Avicennia marina HOM05D002373 ORTHO05D008661 2.8e-108 396.0 278 69.8
SGA_v2.0_scaffold70G23676 Striga asiatica HOM05D002373 ORTHO05D008661 2.0e-106 389.8 336 61.0
Manes.03G109500 Manihot esculenta HOM05D002373 ORTHO05D008661 4.5e-106 388.7 237 78.9
EL10Ac4g08187 Beta vulgaris HOM05D002373 ORTHO05D008661 4.9e-105 385.2 303 64.7
Nitab4.5_0009292g0020 Nicotiana tabacum HOM05D002373 ORTHO05D008661 9.3e-104 380.9 257 72.4
Peaxi162Scf00000g03511 Petunia axillaris HOM05D002373 ORTHO05D008661 1.2e-103 380.6 260 71.5
Hund20000 Selenicereus undatus HOM05D002373 ORTHO05D008661 2.7e-103 379.4 310 64.2
AUR62019433 Chenopodium quinoa HOM05D002373 ORTHO05D008661 2.3e-102 376.3 298 65.4
Zm00001eb153060 Zea mays HOM05D002373 ORTHO05D008661 3.0e-102 375.9 270 68.9
AUR62039201 Chenopodium quinoa HOM05D002373 ORTHO05D008661 8.7e-102 374.4 298 65.4
CDE02G2303 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 1.5e-101 373.6 234 76.5
Ah.06g184370 Amaranthus hybridus HOM05D002373 ORTHO05D008661 2.5e-101 372.9 269 68.0
TWI38G1988 Tripterygium wilfordii HOM05D002373 ORTHO05D008661 5.7e-101 371.7 272 69.9
FAN16G2188 Fragaria x ananassa HOM05D002373 ORTHO05D008661 2.8e-100 369.4 236 75.0
Os01g0747700 Oryza sativa ssp. japonica HOM05D002373 ORTHO05D008661 3.1e-99 365.9 306 62.1
HPP92_024439 Vanilla planifolia HOM05D002373 ORTHO05D008661 3.4e-98 362.5 295 62.7
ATR0737G132 Amborella trichopoda HOM05D002373 ORTHO05D008661 4.6e-95 352.1 246 67.9
Phvul.005G072600 Phaseolus vulgaris HOM05D002373 ORTHO05D008661 5.1e-94 348.6 237 71.7
unitig_26.g9527 Utricularia gibba HOM05D002373 ORTHO05D008661 7.4e-93 344.7 313 59.7
Gorai.013G170800 Gossypium raimondii HOM05D002373 ORTHO05D008661 6.3e-92 341.7 210 78.6
Haze_09434 Corylus avellana HOM05D002373 ORTHO05D008661 4.1e-91 339.0 318 56.6
Sc03g0010080 Simmondsia chinensis HOM05D002373 ORTHO05D008661 4.1e-91 339.0 259 66.0
Rhsim04G0021500 Rhododendron simsii HOM05D002373 ORTHO05D008661 6.9e-91 338.2 267 67.4
Nitab4.5_0000332g0080 Nicotiana tabacum HOM05D002373 ORTHO05D008661 2.9e-89 332.8 257 66.1
FAN21G4050 Fragaria x ananassa HOM05D002373 ORTHO05D008661 5.0e-89 332.0 209 75.6
PSO541G6350 Papaver somniferum HOM05D002373 ORTHO05D008661 3.0e-86 322.8 215 74.0
Oeu060559.2 Olea europaea HOM05D002373 ORTHO05D008661 8.2e-84 314.7 340 51.5
Pp3c20_21790 Physcomitrium patens HOM05D002373 ORTHO05D008661 4.2e-80 302.4 295 54.6
AagrBONN_evm.TU.Sc2ySwM_344.3401 Anthoceros agrestis HOM05D002373 ORTHO05D008661 5.3e-75 285.4 329 47.1
Mapoly0051s0038 Marchantia polymorpha HOM05D002373 ORTHO05D008661 8.0e-71 271.6 289 50.5
SMO367G1013 Selaginella moellendorffii HOM05D002373 ORTHO05D008661 8.8e-70 268.1 243 54.7
Gorai.013G169000 Gossypium raimondii HOM05D002373 ORTHO05D008661 2.2e-68 263.5 223 63.7
Glyma.13G276400 Glycine max HOM05D002373 ORTHO05D008661 1.9e-64 250.4 236 56.8
CDE08G0691 Ceratophyllum demersum HOM05D002373 ORTHO05D008661 2.1e-63 246.9 148 79.7
Cre12.g502950 Chlamydomonas reinhardtii HOM05D002373 ORTHO05D008661 2.7e-63 246.5 251 51.4
MCO14G219 Micromonas commoda HOM05D002373 ORTHO05D008661 2.3e-54 216.9 292 43.5
CSS0025404 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 1.7e-49 200.7 129 75.2
Thecc.07G090900 Theobroma cacao HOM05D002373 ORTHO05D008661 4.3e-40 169.5 105 77.1
Gohir.D13G152082 Gossypium hirsutum HOM05D002373 ORTHO05D008661 3.0e-33 146.7 88 81.8
Gorai.013G170900 Gossypium raimondii HOM05D002373 ORTHO05D008661 8.6e-33 145.2 88 81.8
Gohir.A13G147066 Gossypium hirsutum HOM05D002373 ORTHO05D008661 7.5e-29 132.1 81 80.2
A01p26780 Brassica napus HOM05D002373 ORTHO05D008661 6.6e-25 119.0 76 80.3
PRCOL_00005720 Prasinoderma coloniale HOM05D002373 ORTHO05D008661 3.2e-19 100.1 261 31.4
CSS0007754 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 9.2e-19 98.6 65 72.3
CSS0007182 Camellia sinensis var. sinensis HOM05D002373 ORTHO05D008661 3.5e-18 96.7 64 73.4
BcaC05g28656 Brassica carinata HOM05D022203 ORTHO05D024331 2.4e-11 73.9 36 100.0
Aa31LG8G11430 Aethionema arabicum HOM05D002105 ORTHO05D001271 2.7e-10 70.5 75 53.3
Atru.chr2.2601 Acer truncatum HOM05D002373 ORTHO05D013107 8.7e-09 65.5 51 62.7
C05p47850 Brassica napus HOM05D022203 ORTHO05D024331 1.8e-06 57.8 28 96.4
MD11G1248800 Malus domestica HOM05D002373 ORTHO05D008661 9.0e-06 55.5 95 41.1


User provided reference genes

Program Settings