Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 3.1e-44 181.4 91 100.0
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 2.2e-34 148.7 99 82.8
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 8.4e-34 146.7 99 80.8
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 8.4e-34 146.7 99 80.8
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 8.4e-34 146.7 99 80.8
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 8.4e-34 146.7 99 80.8
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 3.2e-33 144.8 99 79.8
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 9.3e-33 143.3 99 80.8
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.2e-32 142.9 99 80.8
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 1.2e-32 142.9 99 79.8
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.8e-31 139.0 99 77.8
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 3.9e-31 137.9 99 77.8
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 1.3e-29 132.9 99 74.7
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 4.8e-29 131.0 99 73.7
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 4.8e-29 131.0 99 73.7
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.2e-27 126.3 100 66.0
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 1.2e-27 126.3 100 68.0
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.5e-27 125.9 100 64.0
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 2.6e-27 125.2 100 65.0
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 4.5e-27 124.4 99 67.7
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 4.5e-27 124.4 99 67.7
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 7.6e-27 123.6 100 62.0
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 1.3e-26 122.9 100 64.0
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.3e-26 122.9 100 65.0
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.2e-26 122.1 99 66.7
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 2.2e-26 122.1 100 62.0
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.9e-26 121.7 100 61.0
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 2.9e-26 121.7 100 62.0
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 3.8e-26 121.3 100 63.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 4.9e-26 120.9 99 66.7
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 4.9e-26 120.9 100 63.0
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 6.5e-26 120.6 99 64.6
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 6.5e-26 120.6 99 64.6
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 8.4e-26 120.2 100 64.0
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 8.4e-26 120.2 100 63.0
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.1e-25 119.8 100 60.0
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.4e-25 119.4 100 61.0
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.4e-25 119.4 100 61.0
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.9e-25 119.0 99 65.7
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 2.5e-25 118.6 92 68.5
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 3.2e-25 118.2 100 61.0
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 4.2e-25 117.9 99 61.6
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 4.2e-25 117.9 100 62.0
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 4.2e-25 117.9 99 63.6
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 4.2e-25 117.9 99 63.6
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 4.2e-25 117.9 100 61.0
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 4.2e-25 117.9 100 60.0
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 4.2e-25 117.9 99 61.6
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 4.2e-25 117.9 99 61.6
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 4.2e-25 117.9 99 61.6
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 5.5e-25 117.5 100 59.0
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 5.5e-25 117.5 90 70.0
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 7.1e-25 117.1 99 63.6
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 7.1e-25 117.1 100 62.0
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 9.3e-25 116.7 99 60.6
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 9.3e-25 116.7 99 63.6
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 9.3e-25 116.7 99 63.6
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 9.3e-25 116.7 100 60.0
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 1.2e-24 116.3 96 62.5
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.2e-24 116.3 100 59.0
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.6e-24 115.9 99 60.6
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 1.6e-24 115.9 100 59.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.6e-24 115.9 99 60.6
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 2.1e-24 115.5 100 60.0
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.1e-24 115.5 99 60.6
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.1e-24 115.5 99 60.6
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.7e-24 115.2 100 59.0
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 2.7e-24 115.2 90 66.7
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.7e-24 115.2 99 60.6
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 3.5e-24 114.8 99 62.6
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 3.5e-24 114.8 99 61.6
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 4.6e-24 114.4 100 63.0
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 6.0e-24 114.0 100 58.0
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 6.0e-24 114.0 99 62.6
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 6.0e-24 114.0 99 61.6
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 7.9e-24 113.6 100 58.0
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 7.9e-24 113.6 95 61.1
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.0e-23 113.2 100 57.0
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.0e-23 113.2 100 59.0
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.0e-23 113.2 99 61.6
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.3e-23 112.8 96 59.4
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 1.3e-23 112.8 96 61.5
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.3e-23 112.8 100 59.0
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.8e-23 112.5 99 59.6
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.3e-23 112.1 100 57.0
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.3e-23 112.1 90 63.3
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 3.0e-23 111.7 99 59.6
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.7e-23 110.5 100 57.0
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.7e-23 110.5 100 57.0
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 6.7e-23 110.5 99 60.6
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 8.7e-23 110.2 99 57.6
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 8.7e-23 110.2 99 60.6
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 8.7e-23 110.2 77 70.1
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.5e-22 109.4 79 67.1
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.5e-22 109.4 99 59.6
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.9e-22 109.0 100 56.0
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 2.5e-22 108.6 100 56.0
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.7e-22 107.5 96 57.3
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.6e-21 105.9 99 60.6
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.2e-21 105.5 90 57.8
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.2e-21 105.5 81 63.0
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 2.2e-21 105.5 99 58.6
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 3.7e-21 104.8 100 53.0
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 3.7e-21 104.8 100 53.0
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 3.7e-21 104.8 100 53.0
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.8e-21 104.4 96 55.2
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 4.8e-21 104.4 100 54.0
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.1e-20 103.2 79 62.0
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.4e-20 102.8 104 56.7
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 4.1e-20 101.3 92 58.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 6.9e-20 100.5 100 58.0
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.0e-19 99.0 90 60.0
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 3.4e-19 98.2 90 58.9
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 5.9e-19 97.4 91 57.1
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 7.6e-19 97.1 104 54.8
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 2.9e-18 95.1 78 59.0
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 5.0e-18 94.4 81 56.8
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 1.1e-17 93.2 80 60.0
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.4e-17 92.8 92 55.4
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 1.4e-15 86.3 93 51.6
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.9e-14 82.4 99 46.5
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.5e-14 82.0 84 52.4
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 3.3e-14 81.6 45 91.1
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.1e-12 76.6 63 55.6
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 5.3e-12 74.3 36 97.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 9.1e-12 73.6 36 97.2
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 2.6e-11 72.0 58 65.5
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.1e-09 66.6 58 56.9
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 2.5e-09 65.5 64 46.9
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 2.5e-09 65.5 67 49.3
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 3.2e-09 65.1 87 47.1
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.6e-08 62.8 84 44.0
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 4.7e-08 61.2 68 47.1
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.4e-07 59.7 59 57.6
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.4e-07 59.7 41 63.4
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 3.0e-07 58.5 74 43.2
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.5e-06 56.2 40 62.5
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 9.7e-06 53.5 40 60.0


User provided reference genes

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