Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 6.6e-257 890.2 449 100.0
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 3.3e-256 887.9 449 99.8
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 2.5e-248 861.7 454 96.7
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 1.9e-232 808.9 453 91.6
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 1.9e-224 782.3 449 89.3
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 1.9e-224 782.3 459 87.8
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 7.4e-224 780.4 460 88.3
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.3e-223 779.6 456 88.4
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 3.7e-223 778.1 460 88.0
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.8e-222 775.8 459 87.6
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.9e-219 765.8 452 87.2
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 2.7e-218 761.9 457 86.0
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 6.1e-218 760.8 460 86.3
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 3.7e-215 751.5 458 86.0
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 6.7e-201 704.1 460 79.8
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 1.6e-194 682.9 362 94.8
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 2.1e-194 682.6 360 95.3
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 7.5e-192 674.1 344 99.4
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 5.0e-180 634.8 456 72.6
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 8.6e-180 634.0 365 86.0
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.5e-179 633.3 453 74.2
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 4.3e-179 631.7 459 72.1
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.6e-178 629.8 453 73.3
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.6e-178 629.8 455 72.5
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 2.1e-178 629.4 453 73.7
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 2.8e-178 629.0 457 72.4
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 6.8e-177 624.4 461 72.0
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.2e-176 623.6 362 86.5
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 2.9e-175 619.0 362 86.2
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 2.9e-175 619.0 362 85.9
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 3.7e-175 618.6 365 83.3
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 3.7e-175 618.6 451 72.1
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.9e-175 618.2 366 84.4
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.9e-175 618.2 366 84.4
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 6.4e-175 617.8 362 85.4
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.4e-175 617.8 362 85.4
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.1e-174 617.1 365 84.1
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 2.4e-174 615.9 376 81.9
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 3.2e-174 615.5 365 84.1
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.1e-174 615.1 362 84.8
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 5.4e-174 614.8 365 83.6
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 3.5e-173 612.1 366 83.6
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 7.8e-173 610.9 365 82.7
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 7.8e-173 610.9 361 83.7
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.3e-172 610.1 379 81.5
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 5.0e-172 608.2 360 83.1
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 6.6e-172 607.8 361 83.7
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 6.6e-172 607.8 366 82.5
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.1e-171 607.1 408 76.0
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 4.3e-171 605.1 383 78.1
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 5.6e-171 604.7 359 84.4
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.2e-170 603.6 361 80.9
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.2e-170 603.6 363 82.4
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 8.0e-170 600.9 456 71.3
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.8e-169 599.7 365 81.9
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 1.8e-169 599.7 439 71.1
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 6.8e-169 597.8 359 86.4
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 1.2e-168 597.0 364 82.4
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.5e-168 596.7 359 81.3
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 4.4e-168 595.1 359 81.1
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 5.8e-168 594.7 358 82.4
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.7e-167 593.2 394 76.6
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 1.9e-166 589.7 406 74.4
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 1.9e-166 589.7 397 75.3
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 3.2e-166 589.0 358 79.6
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 7.0e-166 587.8 422 70.1
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 7.0e-166 587.8 362 80.1
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.2e-165 587.0 396 76.3
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 4.6e-165 585.1 429 69.7
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 7.8e-165 584.3 395 75.7
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 1.3e-164 583.6 416 72.6
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 3.9e-164 582.0 365 79.5
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 8.6e-164 580.9 363 81.0
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 4.3e-163 578.6 372 79.3
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 7.3e-163 577.8 350 82.0
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 1.2e-162 577.0 374 77.3
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 2.1e-162 576.2 364 78.8
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.6e-162 575.5 344 82.3
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 3.6e-162 575.5 348 82.2
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 2.3e-161 572.8 344 83.4
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 4.4e-160 568.5 353 79.6
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 2.2e-159 566.2 384 75.0
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 2.9e-159 565.8 357 79.0
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 8.3e-159 564.3 421 72.2
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 1.4e-158 563.5 351 79.5
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.4e-158 563.5 351 79.5
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 9.2e-158 560.8 466 65.0
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.7e-157 559.3 367 78.2
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 7.8e-157 557.8 342 81.0
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.7e-156 556.6 370 75.9
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 5.1e-156 555.1 370 75.4
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.9e-155 553.1 353 76.8
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 5.2e-153 545.0 337 80.1
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.2e-152 543.9 365 75.1
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.5e-152 543.5 480 59.8
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 3.4e-152 542.3 339 80.8
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 1.3e-148 530.4 379 73.4
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 2.9e-143 512.7 297 85.5
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 6.4e-143 511.5 300 84.0
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.4e-142 509.6 361 70.6
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 3.2e-142 509.2 312 81.1
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.2e-141 507.3 385 69.6
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 7.8e-141 504.6 443 61.9
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 3.9e-140 502.3 328 77.4
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 6.2e-138 495.0 312 77.2
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 1.1e-137 494.2 385 65.5
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.4e-137 493.8 353 70.0
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 4.5e-136 488.8 339 70.2
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 7.6e-136 488.0 283 84.8
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.7e-135 486.9 338 70.7
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 2.1e-130 469.9 271 86.0
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 5.3e-129 465.3 339 67.6
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.4e-126 457.2 338 68.6
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 5.1e-124 448.7 385 64.2
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 1.1e-121 441.0 283 80.6
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 6.9e-121 438.3 259 82.6
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 3.8e-119 432.6 277 77.6
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 4.1e-113 412.5 251 79.7
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 8.2e-98 361.7 186 100.0
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 9.1e-97 358.2 208 85.6
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 1.1e-94 351.3 282 67.7
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 5.3e-89 332.4 185 86.5
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 2.6e-75 287.0 360 51.4
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 8.3e-74 282.0 335 45.4
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 4.5e-72 276.2 347 43.8
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.3e-63 248.1 132 89.4
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.2e-59 235.0 143 82.5
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.7e-56 223.8 334 36.2
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.1e-52 211.8 124 83.1
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.4e-49 201.4 372 36.6
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.5e-38 164.1 109 77.1
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.6e-37 160.2 104 74.0
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.4e-36 158.3 107 74.8
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 7.6e-35 152.5 130 65.4
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.1e-28 132.1 101 62.4
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 2.4e-28 131.0 80 82.5
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 2.4e-28 131.0 80 82.5
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 2.4e-28 131.0 80 82.5
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 5.8e-27 126.3 80 80.0
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 5.8e-27 126.3 80 80.0
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 9.9e-27 125.6 84 71.4
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 2.2e-26 124.4 80 78.8
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 2.2e-26 124.4 79 81.0
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.1e-24 117.9 64 87.5
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 3.9e-23 113.6 78 69.2
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 6.6e-23 112.8 107 58.9
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 2.1e-21 107.8 125 45.6
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 6.9e-20 102.8 64 82.8
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 5.8e-19 99.8 88 61.4
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 8.7e-15 85.9 54 85.2
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 3.7e-13 80.5 43 93.0
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 3.7e-13 80.5 74 58.1
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 7.1e-09 66.2 36 86.1
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 8.7e-07 59.3 35 77.1
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 8.7e-07 59.3 37 70.3
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 1.1e-06 58.9 40 65.0
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 5.7e-06 56.6 63 49.2


User provided reference genes

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