Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 2.6e-86 322.0 164 100.0
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 2.6e-86 322.0 164 100.0
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 5.0e-85 317.8 164 98.2
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 1.4e-82 309.7 164 94.5
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 2.3e-82 308.9 164 93.9
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 4.4e-81 304.7 164 92.7
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 8.2e-80 300.4 164 90.9
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 3.1e-79 298.5 164 90.2
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 4.1e-79 298.1 164 89.6
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 2.2e-77 292.4 193 79.3
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 6.5e-77 290.8 185 81.1
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 1.4e-76 289.7 164 86.0
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 1.4e-76 289.7 164 86.0
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.6e-75 286.2 164 86.6
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 3.9e-74 281.6 164 84.8
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 7.4e-73 277.3 173 80.3
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 2.8e-72 275.4 164 82.3
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 6.3e-72 274.2 191 73.3
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 5.3e-71 271.2 164 80.5
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 6.1e-67 257.7 164 74.4
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 1.0e-66 256.9 164 74.4
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 1.2e-65 253.4 164 73.2
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.5e-65 253.1 164 70.7
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 2.0e-65 252.7 164 74.4
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 3.3e-65 251.9 164 73.2
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 5.7e-65 251.1 164 73.2
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 74.4
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 70.1
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 2.2e-64 249.2 164 72.0
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 75.0
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 72.0
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 71.3
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 71.3
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 73.2
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 72.0
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 73.8
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 9.1e-63 243.8 164 71.3
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 1.6e-62 243.0 164 69.5
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 69.5
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 69.5
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 69.5
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 71.3
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 2.7e-62 242.3 164 70.1
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 68.9
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 68.9
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 68.9
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 70.7
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 70.1
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 1.3e-61 240.0 164 70.1
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.3e-61 240.0 162 69.1
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 70.1
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 70.7
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 2.2e-61 239.2 163 68.7
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 69.5
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 69.5
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 70.7
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 69.5
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 5.0e-61 238.0 133 87.2
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 68.3
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 69.5
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 69.5
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 1.5e-60 236.5 159 70.4
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 68.3
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 68.3
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 68.9
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 71.3
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 68.9
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 2.5e-60 235.7 163 68.1
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 67.7
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 3.2e-60 235.3 159 71.7
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 3.2e-60 235.3 164 71.3
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 7.2e-60 234.2 164 68.9
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 9.4e-60 233.8 164 68.3
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 9.4e-60 233.8 160 67.5
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 9.4e-60 233.8 164 66.5
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 9.4e-60 233.8 164 66.5
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 65.9
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 2.7e-59 232.3 163 66.9
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 68.3
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 65.9
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 64.6
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 1.8e-58 229.6 164 64.0
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 1.8e-58 229.6 164 65.2
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 2.3e-58 229.2 164 65.9
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 4.0e-58 228.4 164 65.9
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 66.5
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 65.2
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.2e-57 226.9 164 64.6
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 5.7e-57 224.6 164 62.8
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 5.7e-57 224.6 164 62.8
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 5.7e-57 224.6 164 65.9
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 1.3e-56 223.4 164 67.1
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.3e-56 223.4 188 60.6
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 1.7e-56 223.0 164 62.2
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.7e-56 223.0 164 65.2
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 2.2e-56 222.6 164 64.0
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 2.8e-56 222.2 164 65.2
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 4.8e-56 221.5 170 65.9
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 3.1e-55 218.8 164 63.4
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 7.0e-55 217.6 161 62.1
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 5.9e-54 214.5 164 63.4
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 1.3e-53 213.4 164 59.8
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 5.0e-53 211.5 164 61.0
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 1.8e-50 203.0 171 59.1
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.2e-49 200.3 162 54.9
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 8.3e-48 194.1 164 54.3
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 7.0e-47 191.0 98 98.0
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 9.2e-47 190.7 164 56.1
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 9.5e-44 180.6 167 56.9
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 4.7e-43 178.3 169 57.4
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 4.7e-43 178.3 221 47.1
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 8.0e-43 177.6 164 51.8
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 1.2e-41 173.7 132 62.1
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.2e-41 173.7 164 54.3
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.7e-40 169.9 170 52.9
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 1.7e-40 169.9 170 52.9
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 9.2e-39 164.1 117 69.2
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 1.2e-35 153.7 168 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 1.1e-34 150.6 169 44.4
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.2e-33 147.1 98 70.4
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 2.0e-33 146.4 168 45.8
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 6.0e-30 134.8 165 46.7
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 7.8e-30 134.4 122 49.2
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 2.3e-29 132.9 91 72.5
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 1.9e-28 129.8 82 72.0
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 7.3e-28 127.9 94 63.8
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 9.5e-28 127.5 82 70.7
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.4e-26 123.6 82 70.7
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 5.2e-26 121.7 83 68.7
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 3.7e-24 115.5 57 93.0
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 4.1e-23 112.1 99 59.6
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 5.4e-23 111.7 66 77.3
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 2.7e-22 109.4 118 48.3
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 5.8e-17 91.7 69 59.4
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 3.2e-15 85.9 119 34.5
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 4.6e-14 82.0 51 74.5
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 7.8e-14 81.3 46 80.4
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 1.0e-13 80.9 82 50.0
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 1.7e-13 80.1 47 74.5
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 9.6e-12 74.3 48 77.1
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 2.8e-11 72.8 46 67.4
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 3.6e-11 72.4 47 63.8
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 4.0e-10 68.9 51 68.6
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 2.6e-09 66.2 76 50.0
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 4.6e-06 55.5 32 84.4


User provided reference genes

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