Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43723 Brassica carinata HOM05D003774 ORTHO05D010174 4.9e-155 551.2 298 100.0
BolC6t36225H Brassica oleracea HOM05D003774 ORTHO05D010174 1.1e-154 550.1 298 99.7
C06p11060 Brassica napus HOM05D003774 ORTHO05D010174 1.6e-153 546.2 298 99.0
A09p31890 Brassica napus HOM05D003774 ORTHO05D010174 2.9e-152 542.0 298 98.0
BcaB07g33098 Brassica carinata HOM05D003774 ORTHO05D010174 1.0e-141 506.9 296 91.9
BraA09t38729Z Brassica rapa HOM05D003774 ORTHO05D010174 1.2e-140 503.4 276 97.5
Sp1g30100 Schrenkiella parvula HOM05D003774 ORTHO05D010174 3.9e-136 488.4 297 89.9
Thhalv10001819m.g Eutrema salsugineum HOM05D003774 ORTHO05D010174 8.6e-128 460.7 296 84.5
AL1G50100 Arabidopsis lyrata HOM05D003774 ORTHO05D010174 4.3e-127 458.4 296 84.5
Carub.0347s0001 Capsella rubella HOM05D003774 ORTHO05D010174 1.9e-122 443.0 296 81.1
THA.LOC104816539 Tarenaya hassleriana HOM05D003774 ORTHO05D010174 4.6e-97 358.6 270 69.6
AT1G35340 Arabidopsis thaliana HOM05D003774 ORTHO05D010174 9.6e-95 350.9 211 87.7
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 6.5e-91 338.2 273 69.6
Cfa012970 Carpinus fangiana HOM05D003774 ORTHO05D010174 8.7e-88 327.8 270 63.0
CiPaw.07G235600 Carya illinoinensis HOM05D003774 ORTHO05D010174 8.2e-86 321.2 271 62.0
Manes.18G106000 Manihot esculenta HOM05D003774 ORTHO05D010174 8.2e-86 321.2 283 59.7
Thecc.08G192700 Theobroma cacao HOM05D003774 ORTHO05D010174 1.0e-83 314.3 266 64.7
RcHm_v2.0_Chr7g0227131 Rosa chinensis HOM05D003774 ORTHO05D010174 1.1e-82 310.8 261 64.0
Ciclev10003535m.g Citrus clementina HOM05D003774 ORTHO05D010174 1.4e-82 310.5 264 63.6
FAN08G2588 Fragaria x ananassa HOM05D003774 ORTHO05D010174 5.5e-82 308.5 260 63.1
PGSC0003DMG400026729 Solanum tuberosum HOM05D003774 ORTHO05D010174 1.6e-81 307.0 257 61.9
FvH4_5g31600 Fragaria vesca HOM05D003774 ORTHO05D010174 2.1e-81 306.6 258 63.2
Nitab4.5_0005616g0030 Nicotiana tabacum HOM05D003774 ORTHO05D010174 1.0e-80 304.3 257 61.9
Eucgr.F02989 Eucalyptus grandis HOM05D003774 ORTHO05D010174 1.8e-80 303.5 254 64.2
Nitab4.5_0001463g0060 Nicotiana tabacum HOM05D003774 ORTHO05D010174 3.0e-80 302.8 257 61.5
Prupe.1G555700 Prunus persica HOM05D003774 ORTHO05D010174 3.0e-80 302.8 289 57.8
FAN07G1602 Fragaria x ananassa HOM05D003774 ORTHO05D010174 6.7e-80 301.6 260 62.3
Solyc11g027830.2 Solanum lycopersicum HOM05D003774 ORTHO05D010174 6.7e-80 301.6 257 61.5
CANSAT25G1591 Cannabis sativa HOM05D003774 ORTHO05D010174 1.5e-79 300.4 251 62.5
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 1.5e-79 300.4 263 61.2
CAN.G1483.1 Capsicum annuum HOM05D003774 ORTHO05D010174 1.9e-79 300.1 257 60.7
Atru.chr13.2372 Acer truncatum HOM05D003774 ORTHO05D010174 4.3e-79 298.9 258 62.0
Sopen11g022590 Solanum pennellii HOM05D003774 ORTHO05D010174 4.3e-79 298.9 261 60.9
PGR042G3332 Punica granatum HOM05D003774 ORTHO05D010174 1.3e-78 297.4 259 61.0
TWI14G1031 Tripterygium wilfordii HOM05D003774 ORTHO05D010174 1.6e-78 297.0 233 68.7
Haze_21314 Corylus avellana HOM05D003774 ORTHO05D010174 4.1e-77 292.4 277 58.1
PSO170G3079 Papaver somniferum HOM05D003774 ORTHO05D010174 6.9e-77 291.6 287 57.1
Peaxi162Scf00688g00424 Petunia axillaris HOM05D003774 ORTHO05D010174 1.2e-76 290.8 299 53.2
PSO782G0406 Papaver somniferum HOM05D003774 ORTHO05D010174 2.6e-76 289.7 267 60.7
MD14G1036300 Malus domestica HOM05D003774 ORTHO05D010174 5.9e-76 288.5 247 62.3
Migut.C01324 Erythranthe guttata HOM05D003774 ORTHO05D010174 3.8e-75 285.8 258 60.1
Cc00_g20990 Coffea canephora HOM05D003774 ORTHO05D010174 6.5e-75 285.0 243 62.6
Lsat_1_v5_gn_1_25800 Lactuca sativa HOM05D003774 ORTHO05D010174 6.5e-75 285.0 257 58.8
DCAR_017444 Daucus carota HOM05D003774 ORTHO05D010174 1.1e-74 284.3 248 59.7
HanXRQChr02g0036571 Helianthus annuus HOM05D003774 ORTHO05D010174 1.4e-74 283.9 265 56.2
Actinidia29409 Actinidia chinensis HOM05D003774 ORTHO05D010174 4.2e-74 282.3 247 63.2
CsaV3_5G040540 Cucumis sativus L. HOM05D003774 ORTHO05D010174 4.2e-74 282.3 248 60.9
MBI03_g45112_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 4.1e-69 265.8 270 57.8
GSVIVG01026088001 Vitis vinifera HOM05D003774 ORTHO05D010174 3.4e-68 262.7 203 65.5
Cpa.g.sc66.3 Carica papaya HOM05D003774 ORTHO05D010174 5.0e-67 258.8 210 65.2
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 3.2e-66 256.1 257 55.6
COL.COLO4_24648 Corchorus olitorius HOM05D003774 ORTHO05D010174 9.4e-66 254.6 235 60.0
Potri.013G105500 Populus trichocarpa HOM05D003774 ORTHO05D010174 4.7e-65 252.3 215 62.3
ClCG08G000190 Citrullus lanatus HOM05D003774 ORTHO05D010174 1.0e-64 251.1 278 52.2
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 7.7e-60 235.0 210 58.1
SEGI_18058 Sequoiadendron giganteum HOM05D003774 ORTHO05D010174 1.7e-59 233.8 248 52.0
MBI03_g46804_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 3.8e-59 232.6 233 57.5
MD04G1056900 Malus domestica HOM05D003774 ORTHO05D010174 8.5e-59 231.5 212 58.5
CARHR034170 Cardamine hirsuta HOM05D003774 ORTHO05D010174 1.9e-58 230.3 149 85.2
Zm00001eb169160 Zea mays HOM05D003774 ORTHO05D010174 1.6e-57 227.3 244 53.7
Oeu013897.1 Olea europaea HOM05D003774 ORTHO05D010174 2.0e-55 220.3 209 56.0
Pp3c18_9200 Physcomitrium patens HOM05D003774 ORTHO05D010174 8.5e-51 204.9 248 45.2
Mapoly0085s0045 Marchantia polymorpha HOM05D003774 ORTHO05D010174 2.0e-47 193.7 294 39.1
Dinv41759 Davidia involucrata HOM05D003774 ORTHO05D010174 1.9e-42 177.2 150 60.7
MELO3C022227.2 Cucumis melo HOM05D003774 ORTHO05D010174 8.8e-40 168.3 246 43.9
TAR628G1250 Trochodendron aralioides HOM05D003774 ORTHO05D010174 1.8e-32 144.1 121 65.3
Rhsim11G0052800 Rhododendron simsii HOM05D003774 ORTHO05D000166 5.2e-32 142.5 113 65.5
MSTRG.1569 Avicennia marina HOM05D003774 ORTHO05D010174 1.8e-29 134.0 125 60.0
Lj7A284G37 Lonicera japonica HOM05D003774 ORTHO05D010174 7.8e-28 128.6 86 74.4
AagrBONN_evm.TU.Sc2ySwM_340.403 Anthoceros agrestis HOM05D000737 ORTHO05D000581 5.0e-27 125.9 233 34.8
FvH4_5g26640 Fragaria vesca HOM05D003774 ORTHO05D010174 1.0e-24 118.2 144 47.9
Lj7A284T38 Lonicera japonica HOM05D003774 ORTHO05D010174 3.9e-19 99.8 101 53.5
Os11g0219000 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D010174 1.1e-18 98.2 110 48.2
Cre16.g670500 Chlamydomonas reinhardtii HOM05D003774 ORTHO05D010174 7.8e-12 75.5 334 24.3
MCO03G373 Micromonas commoda HOM05D003774 ORTHO05D010174 1.5e-10 71.2 291 27.5
MD15G1405700 Malus domestica HOM05D003774 ORTHO05D010174 1.7e-06 57.8 147 31.3
MBI03_g48045_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D010174 4.9e-06 56.2 49 63.3


User provided reference genes

Program Settings