Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-31 138.7 70 100.0
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.7e-29 132.1 67 100.0
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 5.9e-27 123.6 66 93.9
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 5.9e-27 123.6 66 93.9
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 7.7e-27 123.2 66 92.4
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 7.7e-27 123.2 66 92.4
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.0e-26 122.9 66 92.4
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 1.3e-26 122.5 66 92.4
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.3e-26 122.5 66 92.4
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-26 122.5 66 92.4
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-26 122.5 66 92.4
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.3e-26 122.5 66 92.4
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 1.3e-26 122.5 66 90.9
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 1.7e-26 122.1 66 90.9
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 1.7e-26 122.1 66 90.9
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.7e-26 122.1 66 90.9
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.7e-26 122.1 66 89.4
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 2.2e-26 121.7 66 92.4
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.9e-26 121.3 66 89.4
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 2.9e-26 121.3 66 90.9
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 2.9e-26 121.3 66 89.4
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 2.9e-26 121.3 66 89.4
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 2.9e-26 121.3 66 90.9
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 92.4
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 92.4
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 92.4
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 92.4
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 92.4
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 92.4
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 90.9
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 92.4
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 89.4
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 89.4
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 89.4
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 3.8e-26 120.9 66 89.4
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 5.0e-26 120.6 66 90.9
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 5.0e-26 120.6 66 90.9
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 5.0e-26 120.6 66 90.9
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 5.0e-26 120.6 66 90.9
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 6.5e-26 120.2 66 90.9
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 6.5e-26 120.2 66 90.9
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 6.5e-26 120.2 66 89.4
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 6.5e-26 120.2 66 89.4
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 6.5e-26 120.2 66 90.9
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 8.5e-26 119.8 66 89.4
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 8.5e-26 119.8 66 86.4
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 8.5e-26 119.8 66 89.4
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 8.5e-26 119.8 66 89.4
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 8.5e-26 119.8 66 87.9
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 8.5e-26 119.8 66 90.9
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.1e-25 119.4 66 90.9
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-25 119.4 66 90.9
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.1e-25 119.4 66 87.9
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.1e-25 119.4 66 90.9
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.1e-25 119.4 66 90.9
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.1e-25 119.4 66 89.4
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.1e-25 119.4 66 87.9
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 1.1e-25 119.4 66 87.9
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.1e-25 119.4 66 87.9
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.4e-25 119.0 66 89.4
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 1.4e-25 119.0 66 89.4
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 1.4e-25 119.0 66 87.9
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.9e-25 118.6 66 89.4
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 1.9e-25 118.6 66 89.4
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 1.9e-25 118.6 66 89.4
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 1.9e-25 118.6 66 90.9
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 1.9e-25 118.6 66 87.9
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 2.5e-25 118.2 66 89.4
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 2.5e-25 118.2 66 89.4
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 2.5e-25 118.2 66 89.4
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 2.5e-25 118.2 66 89.4
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 2.5e-25 118.2 66 89.4
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 2.5e-25 118.2 66 87.9
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 3.2e-25 117.9 66 89.4
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.2e-25 117.9 66 87.9
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.2e-25 117.9 66 87.9
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 3.2e-25 117.9 66 87.9
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 3.2e-25 117.9 66 87.9
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 3.2e-25 117.9 66 87.9
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 3.2e-25 117.9 66 87.9
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 4.2e-25 117.5 66 89.4
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 4.2e-25 117.5 66 86.4
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.5e-25 117.1 66 86.4
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.5e-25 117.1 66 87.9
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 5.5e-25 117.1 66 87.9
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 7.2e-25 116.7 66 87.9
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 7.2e-25 116.7 66 86.4
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 7.2e-25 116.7 65 86.2
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 7.2e-25 116.7 66 87.9
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 7.2e-25 116.7 66 87.9
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 7.2e-25 116.7 66 86.4
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 9.4e-25 116.3 66 87.9
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 9.4e-25 116.3 66 86.4
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 9.4e-25 116.3 66 87.9
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 9.4e-25 116.3 66 87.9
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 9.4e-25 116.3 66 87.9
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 1.2e-24 115.9 66 87.9
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.2e-24 115.9 65 87.7
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.6e-24 115.5 66 83.3
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.6e-24 115.5 66 83.3
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.6e-24 115.5 66 84.8
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 2.1e-24 115.2 66 86.4
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 2.1e-24 115.2 66 83.3
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 2.7e-24 114.8 66 86.4
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 2.7e-24 114.8 66 84.8
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 2.7e-24 114.8 65 86.2
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.7e-24 114.8 65 86.2
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 3.6e-24 114.4 66 83.3
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.7e-24 114.0 69 81.2
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 4.7e-24 114.0 66 86.4
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 4.7e-24 114.0 66 84.8
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 6.1e-24 113.6 65 84.6
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 6.1e-24 113.6 66 84.8
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 7.9e-24 113.2 66 83.3
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 7.9e-24 113.2 69 79.7
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.0e-23 112.8 66 83.3
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-23 112.8 66 83.3
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-23 112.8 66 83.3
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 1.0e-23 112.8 66 83.3
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 1.0e-23 112.8 65 84.6
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.4e-23 112.5 65 83.1
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.8e-23 112.1 66 84.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 2.3e-23 111.7 66 84.8
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 2.3e-23 111.7 66 83.3
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.0e-23 111.3 66 81.8
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 3.0e-23 111.3 66 84.8
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 3.0e-23 111.3 65 83.1
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 3.9e-23 110.9 65 83.1
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 3.9e-23 110.9 66 83.3
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 5.1e-23 110.5 66 81.8
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 6.7e-23 110.2 66 81.8
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 6.7e-23 110.2 66 83.3
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 2.0e-22 108.6 66 80.3
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 2.6e-22 108.2 65 83.1
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.3e-22 107.8 66 80.3
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.3e-22 107.8 66 80.3
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 3.3e-22 107.8 66 80.3
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 5.7e-22 107.1 65 81.5
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 5.7e-22 107.1 65 81.5
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 7.4e-22 106.7 66 78.8
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.3e-21 105.9 66 80.3
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 2.2e-21 105.1 66 80.3
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 2.8e-21 104.8 66 75.8
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-20 102.1 67 79.1
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.5e-19 99.0 67 73.1
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 2.6e-19 98.2 66 71.2
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 5.9e-19 97.1 65 76.9
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-17 92.4 49 91.8
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 1.2e-16 89.4 68 67.6
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 2.6e-14 81.6 44 90.9
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 4.4e-14 80.9 66 66.7
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.7e-13 79.0 65 67.7
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 2.8e-13 78.2 54 70.4
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 2.8e-13 78.2 56 71.4
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 2.5e-09 65.1 32 100.0
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 9.4e-09 63.2 40 80.0
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.2e-07 57.4 44 65.9


User provided reference genes

Program Settings