Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 2.9e-64 248.4 129 100.0
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 2.8e-59 231.9 130 95.4
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 2.8e-59 231.9 130 95.4
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 7.7e-57 223.8 130 88.5
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 2.6e-52 208.8 108 95.4
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.6e-38 161.8 129 67.4
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.3e-37 159.1 133 72.9
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.6e-33 146.4 132 62.1
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.5e-31 139.8 132 66.7
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 2.1e-30 136.0 72 88.9
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 2.0e-28 129.4 71 83.1
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 3.4e-28 128.6 71 83.1
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 5.7e-28 127.9 130 56.9
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-27 126.7 71 80.3
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-27 126.7 71 80.3
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-27 126.3 71 81.7
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 2.2e-27 125.9 133 54.1
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 6.6e-24 114.4 72 72.2
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 6.6e-24 114.4 72 72.2
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 7.3e-23 110.9 72 70.8
BcaB02g10824 Brassica carinata HOM05D004137 ORTHO05D004804 3.6e-22 108.6 72 72.2
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.0e-20 102.8 123 53.7
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 5.7e-20 101.3 134 50.0
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 1.9e-15 86.3 72 55.6
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 7.3e-15 84.3 69 56.5
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.2e-14 83.6 69 55.1
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 2.1e-14 82.8 69 53.6
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 2.8e-14 82.4 67 59.7
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 2.8e-14 82.4 67 59.7
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 4.7e-14 81.6 72 48.6
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.4e-13 80.1 68 52.9
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 1.4e-13 80.1 73 46.6
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.8e-13 79.7 92 51.1
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.8e-13 79.7 68 51.5
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 3.1e-13 79.0 77 45.5
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 3.1e-13 79.0 70 51.4
BraA05t20644Z Brassica rapa HOM05D004137 ORTHO05D004804 5.2e-13 78.2 49 67.3
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 6.8e-13 77.8 62 53.2
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.2e-12 77.0 73 50.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.4e-12 75.5 69 52.2
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 3.4e-12 75.5 69 52.2
Sp3g11710 Schrenkiella parvula HOM05D004137 ORTHO05D004804 3.4e-12 75.5 59 57.6
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 3.4e-12 75.5 67 49.3
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 4.4e-12 75.1 69 50.7
Carub.0003s1297 Capsella rubella HOM05D004137 ORTHO05D004804 5.8e-12 74.7 125 44.8
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.7e-11 73.2 69 50.7
AL3G25410 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 2.2e-11 72.8 125 43.2
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 2.2e-11 72.8 128 38.3
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 2.9e-11 72.4 70 47.1
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 3.7e-11 72.0 76 44.7
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 4.9e-11 71.6 70 47.1
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 6.4e-11 71.2 70 50.0
CARHR088170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 8.3e-11 70.9 66 53.0
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 8.3e-11 70.9 68 47.1
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.9e-10 69.7 87 40.2
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 1.9e-10 69.7 68 45.6
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.4e-10 69.3 64 46.9
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.4e-10 69.3 64 46.9
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 3.2e-10 68.9 63 49.2
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 3.2e-10 68.9 77 42.9
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 4.1e-10 68.6 70 45.7
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 4.1e-10 68.6 77 49.4
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 5.4e-10 68.2 79 40.5
AT3G13500 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 7.0e-10 67.8 129 43.4
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 7.0e-10 67.8 65 43.1
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.0e-10 67.8 63 52.4
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 7.0e-10 67.8 61 49.2
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 7.0e-10 67.8 68 45.6
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 9.2e-10 67.4 70 45.7
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 9.2e-10 67.4 71 43.7
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 1.2e-09 67.0 68 44.1
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 1.6e-09 66.6 63 50.8
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.6e-09 66.6 63 46.0
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 2.0e-09 66.2 62 48.4
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.7e-09 65.9 64 43.8
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.5e-09 65.5 70 45.7
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 4.6e-09 65.1 68 42.6
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 4.6e-09 65.1 68 42.6
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 4.6e-09 65.1 69 46.4
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 6.0e-09 64.7 68 41.2
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.0e-08 63.9 94 37.2
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 1.3e-08 63.5 68 41.2
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.7e-08 63.2 116 33.6
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.7e-08 63.2 126 32.5
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 3.0e-08 62.4 91 38.5
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 3.9e-08 62.0 69 46.4
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 5.0e-08 61.6 64 42.2
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 6.6e-08 61.2 68 39.7
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 6.6e-08 61.2 63 41.3
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 8.6e-08 60.8 68 41.2
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 8.6e-08 60.8 64 42.2
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.1e-07 60.5 68 39.7
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 1.5e-07 60.1 68 41.2
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 1.9e-07 59.7 90 35.6
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.9e-07 59.7 69 40.6
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.5e-07 59.3 107 35.5
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 5.6e-07 58.2 66 43.9
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 7.3e-07 57.8 68 38.2
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 9.5e-07 57.4 68 38.2
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 9.5e-07 57.4 68 42.6
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-06 57.0 63 39.7
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 1.2e-06 57.0 68 38.2
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 1.2e-06 57.0 63 39.7
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 2.1e-06 56.2 92 39.1
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 2.8e-06 55.8 130 31.5
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 4.7e-06 55.1 63 38.1
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 4.7e-06 55.1 63 38.1
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 4.7e-06 55.1 63 38.1


User provided reference genes

Program Settings