Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 3.5e-258 894.4 449 100.0
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 3.5e-258 894.4 449 100.0
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 9.0e-254 879.8 449 97.8
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 4.5e-253 877.5 449 97.6
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 7.9e-250 866.7 449 97.8
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.0e-236 823.2 456 91.7
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 1.4e-227 792.7 465 85.2
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 3.0e-225 785.0 464 84.3
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 4.2e-211 738.0 465 79.8
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.6e-210 736.1 464 80.2
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 3.7e-207 724.9 464 77.8
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 1.4e-201 706.4 473 76.1
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 7.5e-200 700.7 478 73.0
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.4e-198 695.7 480 74.2
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 1.6e-197 693.0 481 73.8
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 1.6e-194 682.9 480 72.5
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.0e-193 680.2 478 71.8
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 9.1e-190 667.2 465 72.9
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 4.5e-189 664.8 475 72.0
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 5.0e-188 661.4 474 71.5
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 6.6e-188 661.0 466 72.5
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.5e-187 659.8 474 71.3
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 2.5e-187 659.1 483 70.6
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 2.4e-182 642.5 478 69.7
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 1.3e-175 620.2 471 64.8
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.4e-174 615.9 472 64.0
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 1.2e-173 613.6 471 63.3
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 2.7e-173 612.5 482 62.9
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.6e-172 607.8 472 62.7
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 6.6e-172 607.8 473 63.0
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 1.5e-171 606.7 478 62.3
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 2.5e-171 605.9 480 62.9
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 4.3e-171 605.1 474 62.9
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 7.3e-171 604.4 476 62.6
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.6e-170 603.2 473 62.6
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 2.1e-170 602.8 475 62.9
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 1.1e-169 600.5 477 63.7
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.4e-169 600.1 481 61.5
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 1.4e-169 600.1 475 62.3
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 2.3e-169 599.4 476 62.8
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 2.3e-169 599.4 476 62.8
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 3.1e-169 599.0 476 63.0
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 1.2e-168 597.0 476 63.4
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.0e-168 596.3 479 61.6
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.3e-167 593.6 476 61.6
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.3e-167 593.6 482 61.6
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 3.7e-167 592.0 481 61.1
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 4.9e-167 591.7 483 61.5
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.4e-166 590.1 478 62.1
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.4e-166 590.1 481 60.5
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 1.9e-166 589.7 480 61.2
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 7.0e-166 587.8 475 62.7
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 9.2e-166 587.4 480 61.9
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 9.2e-166 587.4 468 60.5
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 1.6e-165 586.6 479 60.1
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 2.7e-165 585.9 482 60.6
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 3.5e-165 585.5 482 61.0
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 4.6e-165 585.1 476 60.5
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 6.0e-165 584.7 476 60.7
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 7.8e-165 584.3 479 61.6
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 1.3e-164 583.6 477 61.2
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 6.6e-164 581.3 328 85.4
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 8.6e-164 580.9 481 61.3
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 4.3e-163 578.6 472 59.5
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 9.5e-163 577.4 480 61.2
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.8e-162 575.9 515 58.4
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 6.2e-162 574.7 482 60.6
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 2.3e-161 572.8 459 60.8
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 6.8e-161 571.2 513 58.5
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.9e-161 570.9 496 60.1
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 1.2e-160 570.5 473 60.7
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 1.5e-160 570.1 517 54.7
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.5e-160 570.1 515 55.9
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 2.6e-160 569.3 515 56.1
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 2.2e-159 566.2 515 55.7
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 1.9e-158 563.1 488 58.6
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.9e-158 563.1 483 59.4
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 4.1e-158 562.0 475 59.6
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 5.4e-158 561.6 476 57.4
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 5.4e-158 561.6 482 57.9
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 6.0e-157 558.1 527 55.8
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 8.6e-156 554.3 430 63.5
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 2.5e-155 552.7 478 57.9
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 2.8e-154 549.3 478 58.2
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 8.1e-154 547.7 489 57.7
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 1.1e-153 547.4 482 58.3
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 4.0e-153 545.4 484 56.0
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 1.5e-152 543.5 546 52.9
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 3.4e-152 542.3 483 57.8
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 7.6e-152 541.2 515 54.0
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 9.9e-152 540.8 484 56.0
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 1.3e-151 540.4 503 54.3
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 4.9e-151 538.5 482 57.5
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 2.4e-150 536.2 477 57.7
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 7.1e-150 534.6 480 56.5
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 7.1e-150 534.6 479 57.0
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 9.2e-150 534.3 526 52.1
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 9.2e-150 534.3 474 56.1
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.6e-149 533.5 479 57.8
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 2.1e-149 533.1 484 56.4
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.5e-149 532.3 502 55.0
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.3e-148 529.6 482 56.6
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 5.1e-148 528.5 516 52.3
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 3.3e-147 525.8 473 57.7
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 9.6e-147 524.2 435 59.3
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 3.4e-144 515.8 437 59.3
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 3.9e-140 502.3 439 57.6
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.3e-139 498.8 492 51.6
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.3e-138 497.3 480 53.5
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.1e-137 494.2 476 53.2
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.8e-137 493.4 478 52.3
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.0e-136 490.0 478 52.1
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.2e-133 480.7 495 48.9
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 7.9e-133 478.0 408 60.0
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 3.3e-131 472.6 390 61.3
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 6.2e-130 468.4 391 57.8
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 1.5e-128 463.8 282 74.5
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.3e-127 460.7 395 60.5
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.9e-127 459.5 380 61.3
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.1e-126 457.6 431 56.4
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 3.2e-126 456.1 423 53.9
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 1.6e-125 453.8 287 70.7
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 2.1e-125 453.4 391 59.3
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 5.6e-123 445.3 510 46.5
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 4.0e-121 439.1 457 50.1
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.9e-118 430.3 287 66.9
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 5.5e-118 428.7 439 52.4
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 9.3e-118 427.9 455 51.2
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 1.2e-117 427.6 434 54.6
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 5.9e-112 408.7 472 47.0
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 6.7e-108 395.2 351 59.0
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 6.7e-108 395.2 302 59.3
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 4.2e-102 375.9 399 52.1
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.2e-102 375.9 399 46.6
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 2.1e-101 373.6 287 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 2.9e-95 353.2 341 51.9
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 1.1e-94 351.3 304 56.2
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 2.5e-94 350.1 303 55.4
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 5.9e-88 328.9 383 45.2
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 2.3e-84 317.0 283 53.7
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.0e-76 291.6 296 53.7
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 4.8e-74 282.7 372 45.7
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 4.1e-57 226.5 299 46.8
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 4.6e-56 223.0 205 51.7
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.6e-53 213.4 202 54.0
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.4e-51 206.5 179 58.1
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.1e-44 185.3 124 76.6
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.0e-39 167.2 95 81.1
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.5e-38 164.1 92 81.5
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.6e-37 160.2 95 76.8
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 2.4e-36 157.5 191 50.8
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.4e-35 153.7 121 65.3
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.4e-33 148.3 126 48.4
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 7.1e-33 146.0 176 51.7
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 5.1e-31 139.8 168 53.0
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 3.6e-29 133.7 144 45.1
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 3.6e-29 133.7 144 45.1
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 1.4e-28 131.7 121 57.0
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 6.9e-28 129.4 87 64.4
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 6.9e-28 129.4 87 64.4
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 2.3e-23 114.4 111 55.9
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 5.6e-22 109.8 174 39.7
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 2.6e-19 100.9 117 47.0
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 1.6e-13 81.6 45 80.0
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 4.9e-10 70.1 135 36.3


User provided reference genes

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