Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43503 Brassica carinata HOM05D000042 ORTHO05D020036 2.1e-68 262.3 142 100.0
BraA06t23345Z Brassica rapa HOM05D000042 ORTHO05D020036 1.2e-42 176.8 191 59.7
BolC6t35967H Brassica oleracea HOM05D000042 ORTHO05D020036 1.7e-41 172.9 116 85.3
A06p01180 Brassica napus HOM05D000042 ORTHO05D020036 2.2e-36 156.0 111 79.3
C06p08840 Brassica napus HOM05D000042 ORTHO05D020036 1.8e-30 136.3 173 54.3
C06p08880 Brassica napus HOM05D000042 ORTHO05D020036 5.7e-29 131.3 86 82.6
C08p32790 Brassica napus HOM05D000042 ORTHO05D000028 2.8e-28 129.0 118 69.5
BolC8t50890H Brassica oleracea HOM05D000042 ORTHO05D000028 2.8e-28 129.0 118 69.5
A09p50280 Brassica napus HOM05D000042 ORTHO05D000028 1.2e-26 123.6 118 67.8
BraA09t40479Z Brassica rapa HOM05D000042 ORTHO05D000028 1.2e-26 123.6 118 67.8
A07p23370 Brassica napus HOM05D000042 ORTHO05D000028 1.9e-24 116.3 120 65.0
BraA07t30002Z Brassica rapa HOM05D000042 ORTHO05D000028 1.9e-24 116.3 120 65.0
BraA04t16037Z Brassica rapa HOM05D000042 ORTHO05D000028 2.1e-23 112.8 122 63.1
BcaB02g07609 Brassica carinata HOM05D000042 ORTHO05D000028 2.7e-23 112.5 121 62.8
Sp5g05210 Schrenkiella parvula HOM05D000042 ORTHO05D000028 4.7e-23 111.7 120 64.2
BolC6t35962H Brassica oleracea HOM05D000042 ORTHO05D020036 8.0e-23 110.9 71 85.9
C06p24440 Brassica napus HOM05D000042 ORTHO05D000028 1.0e-22 110.5 120 61.7
BolC6t37591H Brassica oleracea HOM05D000042 ORTHO05D000028 1.0e-22 110.5 120 61.7
BcaC02g09933 Brassica carinata HOM05D000042 ORTHO05D000028 4.0e-22 108.6 121 62.8
C04p35030 Brassica napus HOM05D000042 ORTHO05D000028 4.0e-22 108.6 121 62.8
BolC4t25060H Brassica oleracea HOM05D000042 ORTHO05D000028 4.0e-22 108.6 121 62.8
AT3G57390 Arabidopsis thaliana HOM05D000042 ORTHO05D000028 6.8e-22 107.8 120 62.5
BcaC08g44836 Brassica carinata HOM05D000042 ORTHO05D000028 1.2e-21 107.1 120 60.8
BcaB02g08318 Brassica carinata HOM05D000042 ORTHO05D000028 2.0e-21 106.3 121 62.0
Aa31LG10G12220 Aethionema arabicum HOM05D000042 ORTHO05D000028 2.6e-21 105.9 134 56.0
Thhalv10006251m.g Eutrema salsugineum HOM05D000042 ORTHO05D000028 5.7e-21 104.8 88 72.7
AL5G38920 Arabidopsis lyrata HOM05D000042 ORTHO05D000028 1.7e-20 103.2 119 58.8
BcaC07g40392 Brassica carinata HOM05D000042 ORTHO05D000028 3.7e-20 102.1 144 52.8
THA.LOC104824433 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 1.8e-19 99.8 127 47.2
A04p03160 Brassica napus HOM05D000042 ORTHO05D000028 4.1e-19 98.6 145 51.7
Carub.0005s2423 Capsella rubella HOM05D000042 ORTHO05D000028 9.1e-19 97.4 120 59.2
THA.LOC104817587 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 5.5e-16 88.2 77 63.6
Duzib106G1526 Durio zibethinus HOM05D000042 ORTHO05D000028 2.6e-13 79.3 178 36.0
ECA247G0313 Erigeron canadensis HOM05D000042 ORTHO05D000028 8.3e-12 74.3 136 35.3
Ciclev10005698m.g Citrus clementina HOM05D000042 ORTHO05D000028 2.4e-11 72.8 117 41.0
Duzib093G0336 Durio zibethinus HOM05D000042 ORTHO05D000028 4.1e-11 72.0 224 32.1
Cfa016796 Carpinus fangiana HOM05D000042 ORTHO05D000028 5.4e-11 71.6 131 40.5
MELO3C024001.2 Cucumis melo HOM05D000042 ORTHO05D000028 9.2e-11 70.9 127 38.6
CSS0023376 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 2.0e-10 69.7 178 33.1
Dinv39623 Davidia involucrata HOM05D000042 ORTHO05D000028 2.0e-10 69.7 212 31.6
Atru.chr1.1136 Acer truncatum HOM05D000042 ORTHO05D000028 2.7e-10 69.3 111 45.0
Duzib128G0515 Durio zibethinus HOM05D000042 ORTHO05D000028 5.9e-10 68.2 176 31.8
Lju124C44T12 Lonicera japonica HOM05D000042 ORTHO05D000028 5.9e-10 68.2 211 30.8
THA.LOC104804844 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 1.7e-09 66.6 86 46.5
BcaB05g23180 Brassica carinata HOM05D000042 ORTHO05D000028 2.3e-09 66.2 53 73.6
CiPaw.09G039300 Carya illinoinensis HOM05D000042 ORTHO05D000028 2.9e-09 65.9 217 30.0
Cfa016798 Carpinus fangiana HOM05D000042 ORTHO05D000028 5.0e-09 65.1 85 45.9
TWI77G0779 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 5.0e-09 65.1 216 32.4
Gohir.D11G329600 Gossypium hirsutum HOM05D000042 ORTHO05D000028 6.6e-09 64.7 205 30.2
Gohir.D11G330500 Gossypium hirsutum HOM05D000042 ORTHO05D000028 1.1e-08 63.9 96 40.6
Gorai.007G360800 Gossypium raimondii HOM05D000042 ORTHO05D000028 1.1e-08 63.9 205 30.2
Thecc.05G150100 Theobroma cacao HOM05D000042 ORTHO05D000028 1.5e-08 63.5 199 30.7
Nn2g15187 Nelumbo nucifera HOM05D000042 ORTHO05D000028 1.9e-08 63.2 98 42.9
TAR636G0038 Trochodendron aralioides HOM05D000042 ORTHO05D000028 2.5e-08 62.8 64 54.7
VMungo0720G3184 Vigna mungo HOM05D000042 ORTHO05D000028 2.5e-08 62.8 220 28.6
Cpa.g.c37200 Carica papaya HOM05D000042 ORTHO05D000028 5.6e-08 61.6 125 36.8
MSTRG.19853 Avicennia marina HOM05D000042 ORTHO05D000028 7.3e-08 61.2 69 46.4
Lalb_Chr21g0316521 Lupinus albus HOM05D000042 ORTHO05D000028 7.3e-08 61.2 174 31.0
Lj5g0007892 Lotus japonicus HOM05D000042 ORTHO05D000028 9.5e-08 60.8 230 29.1
Migut.O00954 Erythranthe guttata HOM05D027860 ORTHO05D000028 1.2e-07 60.5 89 41.6
MD00G1106300 Malus domestica HOM05D000042 ORTHO05D000028 1.2e-07 60.5 132 39.4
Ah.10g038550 Amaranthus hybridus HOM05D000042 ORTHO05D000028 1.6e-07 60.1 186 30.6
Aqoxy1G00318 Aquilegia oxysepala HOM05D000042 ORTHO05D000028 2.1e-07 59.7 65 52.3
EL10Ac2g04380 Beta vulgaris HOM05D000042 ORTHO05D000028 2.1e-07 59.7 186 30.6
Lj3g0001475 Lotus japonicus HOM05D000042 ORTHO05D000028 2.1e-07 59.7 165 30.3
SGA_v2.0_scaffold69G23122 Striga asiatica HOM05D000042 ORTHO05D000028 2.8e-07 59.3 207 29.5
Ah.16g100680 Amaranthus hybridus HOM05D000042 ORTHO05D000028 3.6e-07 58.9 102 40.2
Lalb_Chr19g0140231 Lupinus albus HOM05D000042 ORTHO05D000028 3.6e-07 58.9 172 29.7
CANSAT80G1550 Cannabis sativa HOM05D000042 ORTHO05D000028 4.7e-07 58.5 172 31.4
PGR004G1335 Punica granatum HOM05D000042 ORTHO05D000028 4.7e-07 58.5 86 41.9
Phvul.007G251600 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 6.1e-07 58.2 231 27.7
GSVIVG01033253001 Vitis vinifera HOM05D000042 ORTHO05D000028 6.1e-07 58.2 64 48.4
MSTRG.6418 Avicennia marina HOM05D000042 ORTHO05D000028 8.0e-07 57.8 220 29.1
CSS0039724 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 8.0e-07 57.8 177 30.5
Glyma.02G185500 Glycine max HOM05D000042 ORTHO05D000028 8.0e-07 57.8 224 27.7
MBI17_g18123_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000028 8.0e-07 57.8 67 50.7
THA.LOC104826694 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 8.0e-07 57.8 174 29.9
Ca_27021_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 1.4e-06 57.0 67 46.3
Sabra09G0040800 Salix brachista HOM05D000042 ORTHO05D000028 1.4e-06 57.0 61 50.8
HanXRQChr10g0299591 Helianthus annuus HOM05D000042 ORTHO05D000028 1.8e-06 56.6 219 26.9
Sed0024257 Sechium edule HOM05D000042 ORTHO05D000028 1.8e-06 56.6 70 42.9
COL.COLO4_20029 Corchorus olitorius HOM05D000042 ORTHO05D000028 2.3e-06 56.2 64 46.9
Peaxi162Scf00130g00423 Petunia axillaris HOM05D000042 ORTHO05D000028 2.3e-06 56.2 175 28.6
Prupe.7G055900 Prunus persica HOM05D000042 ORTHO05D000028 2.3e-06 56.2 130 37.7
TPR.G8340 Trifolium pratense HOM05D000042 ORTHO05D000028 2.3e-06 56.2 65 44.6
Cfa010822 Carpinus fangiana HOM05D000042 ORTHO05D000028 3.0e-06 55.8 175 28.0
Manes.10G135400 Manihot esculenta HOM05D000042 ORTHO05D000028 4.0e-06 55.5 92 37.0
Lsat_1_v5_gn_9_31261 Lactuca sativa HOM05D000042 ORTHO05D000028 5.2e-06 55.1 106 34.9
MD07G1022500 Malus domestica HOM05D000042 ORTHO05D000028 5.2e-06 55.1 92 37.0
SGA_v2.0_scaffold105G30399 Striga asiatica HOM05D027860 ORTHO05D000028 5.2e-06 55.1 143 30.1
Cc06_g17700 Coffea canephora HOM05D000042 ORTHO05D000028 6.8e-06 54.7 217 29.0
Eucgr.G03284 Eucalyptus grandis HOM05D000042 ORTHO05D000028 6.8e-06 54.7 224 29.9
Medtr1g053070 Medicago truncatula HOM05D000042 ORTHO05D000028 6.8e-06 54.7 181 27.6
PGR031G1523 Punica granatum HOM05D000042 ORTHO05D000028 8.9e-06 54.3 179 29.1
Sabra06G0034000 Salix brachista HOM05D000042 ORTHO05D000028 8.9e-06 54.3 113 39.8
SalBow6G2376 Salvia bowleyana HOM05D027860 ORTHO05D000028 8.9e-06 54.3 69 42.0


User provided reference genes

Program Settings