Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 8.5e-63 243.4 117 100.0
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 5.2e-52 207.6 102 99.0
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 5.2e-52 207.6 102 99.0
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 5.2e-52 207.6 102 99.0
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 5.2e-52 207.6 102 99.0
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 5.2e-52 207.6 102 99.0
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 5.2e-52 207.6 102 99.0
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 5.2e-52 207.6 102 99.0
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 5.2e-52 207.6 102 99.0
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 1.2e-51 206.5 102 98.0
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 1.2e-51 206.5 102 98.0
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 1.2e-51 206.5 102 98.0
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.2e-51 206.5 102 98.0
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 1.5e-51 206.1 101 99.0
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 2.0e-51 205.7 102 98.0
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 2.0e-51 205.7 102 98.0
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 2.6e-51 205.3 102 98.0
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 2.6e-51 205.3 102 97.1
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 2.6e-51 205.3 117 89.7
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 3.3e-51 204.9 102 97.1
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 3.3e-51 204.9 102 97.1
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 3.3e-51 204.9 102 97.1
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 3.3e-51 204.9 102 97.1
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 3.3e-51 204.9 102 97.1
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 3.3e-51 204.9 102 97.1
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 7.5e-51 203.8 102 97.1
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 1.3e-50 203.0 102 96.1
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.3e-50 203.0 102 96.1
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 1.3e-50 203.0 102 96.1
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.7e-50 202.6 102 96.1
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 3.7e-50 201.4 102 95.1
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 8.2e-50 200.3 102 94.1
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 8.2e-50 200.3 101 96.0
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 1.8e-49 199.1 102 93.1
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 2.4e-49 198.7 102 93.1
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 5.3e-49 197.6 102 93.1
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 7.0e-49 197.2 102 92.2
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 2.2e-47 192.2 101 91.1
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 3.8e-47 191.4 102 88.2
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 3.8e-47 191.4 102 88.2
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 6.5e-47 190.7 102 87.3
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 6.5e-47 190.7 102 88.2
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 1.1e-46 189.9 102 87.3
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 1.1e-46 189.9 102 87.3
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 1.1e-46 189.9 102 88.2
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 1.9e-46 189.1 102 87.3
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 1.9e-46 189.1 102 87.3
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.9e-46 189.1 102 86.3
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.9e-46 189.1 102 87.3
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 2.5e-46 188.7 101 88.1
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 2.5e-46 188.7 102 87.3
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 3.2e-46 188.3 102 86.3
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 3.2e-46 188.3 102 86.3
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.2e-46 188.3 102 88.2
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 3.2e-46 188.3 102 87.3
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 3.2e-46 188.3 102 87.3
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 4.2e-46 188.0 102 85.3
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 4.2e-46 188.0 102 87.3
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 4.2e-46 188.0 102 86.3
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.2e-46 188.0 102 86.3
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 5.5e-46 187.6 102 86.3
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 5.5e-46 187.6 117 77.8
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 7.2e-46 187.2 102 87.3
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 7.2e-46 187.2 102 85.3
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 9.4e-46 186.8 101 87.1
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 9.4e-46 186.8 102 85.3
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 9.4e-46 186.8 102 85.3
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 9.4e-46 186.8 102 87.3
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.2e-45 186.4 102 86.3
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.2e-45 186.4 102 86.3
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.2e-45 186.4 101 86.1
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 1.6e-45 186.0 102 86.3
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 1.6e-45 186.0 102 87.3
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 1.6e-45 186.0 102 86.3
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.6e-45 186.0 102 86.3
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.6e-45 186.0 102 86.3
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 1.6e-45 186.0 102 86.3
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.6e-45 186.0 102 86.3
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.6e-45 186.0 102 86.3
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 2.1e-45 185.7 102 87.3
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 2.1e-45 185.7 102 85.3
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 3.6e-45 184.9 102 85.3
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 3.6e-45 184.9 102 86.3
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 3.6e-45 184.9 101 86.1
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 3.6e-45 184.9 102 85.3
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 3.6e-45 184.9 102 85.3
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 4.7e-45 184.5 102 86.3
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 4.7e-45 184.5 102 85.3
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 4.7e-45 184.5 102 85.3
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 4.7e-45 184.5 102 86.3
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 6.1e-45 184.1 101 86.1
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 6.1e-45 184.1 102 85.3
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 6.1e-45 184.1 102 85.3
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.1e-45 184.1 102 85.3
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 6.1e-45 184.1 102 84.3
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 8.0e-45 183.7 100 87.0
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 1.0e-44 183.3 102 86.3
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 1.0e-44 183.3 102 86.3
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 1.0e-44 183.3 102 86.3
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 1.4e-44 183.0 102 84.3
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 1.4e-44 183.0 102 83.3
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.8e-44 182.6 102 85.3
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 1.8e-44 182.6 101 84.2
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 1.8e-44 182.6 101 84.2
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 1.8e-44 182.6 102 83.3
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 1.8e-44 182.6 102 84.3
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.8e-44 182.6 101 84.2
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 1.8e-44 182.6 102 84.3
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 2.3e-44 182.2 102 83.3
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 2.3e-44 182.2 102 84.3
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 2.3e-44 182.2 102 84.3
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 2.3e-44 182.2 102 83.3
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 2.3e-44 182.2 102 85.3
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 3.0e-44 181.8 101 83.2
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 3.0e-44 181.8 102 83.3
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 4.0e-44 181.4 102 84.3
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 4.0e-44 181.4 102 83.3
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 4.0e-44 181.4 102 84.3
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 4.0e-44 181.4 102 83.3
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 4.0e-44 181.4 102 83.3
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 5.2e-44 181.0 102 83.3
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 5.2e-44 181.0 102 83.3
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 5.2e-44 181.0 102 83.3
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 6.8e-44 180.6 117 76.1
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 8.8e-44 180.3 102 85.3
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 8.8e-44 180.3 102 85.3
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 8.8e-44 180.3 102 83.3
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 1.2e-43 179.9 102 83.3
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 1.5e-43 179.5 102 84.3
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 1.5e-43 179.5 114 76.3
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.5e-43 179.5 104 81.7
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 2.0e-43 179.1 102 85.3
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 2.0e-43 179.1 99 84.8
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 2.6e-43 178.7 103 81.6
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 4.4e-43 177.9 102 83.3
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 7.5e-43 177.2 102 83.3
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 7.5e-43 177.2 116 76.7
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 7.5e-43 177.2 116 76.7
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 7.5e-43 177.2 102 82.4
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 7.5e-43 177.2 102 83.3
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 9.8e-43 176.8 102 78.4
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 9.8e-43 176.8 95 87.4
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.3e-42 176.4 141 65.2
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 1.7e-42 176.0 94 87.2
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 1.7e-42 176.0 99 83.8
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 2.2e-42 175.6 102 81.4
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 3.7e-42 174.9 102 79.4
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 2.4e-41 172.2 100 82.0
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 4.1e-41 171.4 102 77.5
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 7.0e-41 170.6 98 81.6
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 9.1e-41 170.2 116 75.0
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 1.7e-39 166.0 99 77.8
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.7e-39 166.0 116 73.3
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.6e-39 164.1 91 84.6
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 2.2e-34 149.1 86 83.7
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 1.8e-33 146.0 100 75.0
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 5.9e-32 141.0 103 61.2
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.1e-30 136.7 103 60.2
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 1.5e-30 136.3 105 62.9
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 2.5e-30 135.6 104 61.5
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 7.5e-27 124.0 102 68.6
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 2.4e-25 119.0 102 66.7
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 2.5e-22 109.0 52 96.2
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 2.0e-19 99.4 60 78.3
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 2.9e-18 95.5 60 75.0
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 2.4e-17 92.4 42 97.6
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 4.1e-17 91.7 42 95.2
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 5.4e-17 91.3 42 95.2
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.6e-16 89.7 42 92.9
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 4.6e-16 88.2 98 46.9
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 2.6e-11 72.4 103 47.6
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 5.8e-11 71.2 99 39.4
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 4.9e-10 68.2 37 83.8
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 5.4e-09 64.7 34 85.3
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 7.1e-09 64.3 33 87.9
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 1.6e-08 63.2 45 68.9


User provided reference genes

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