Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43372 Brassica carinata HOM05D007180 ORTHO05D009028 2.3e-176 622.1 308 100.0
C06p07400 Brassica napus HOM05D007180 ORTHO05D009028 3.8e-155 551.6 287 97.2
BolC6t35829H Brassica oleracea HOM05D007180 ORTHO05D009028 3.8e-155 551.6 287 97.2
A06p02010 Brassica napus HOM05D007180 ORTHO05D009028 5.0e-155 551.2 287 96.9
BraA06t23417Z Brassica rapa HOM05D007180 ORTHO05D009028 5.0e-155 551.2 287 96.9
Thhalv10011664m.g Eutrema salsugineum HOM05D007180 ORTHO05D009028 4.7e-153 544.7 286 95.1
Sp1g38710 Schrenkiella parvula HOM05D007180 ORTHO05D009028 8.0e-153 543.9 286 95.1
AT1G52155 Arabidopsis thaliana HOM05D007180 ORTHO05D009028 1.2e-151 540.0 286 94.4
Carub.0001s4110 Capsella rubella HOM05D007180 ORTHO05D009028 1.2e-151 540.0 286 94.8
AL1G60250 Arabidopsis lyrata HOM05D007180 ORTHO05D009028 5.7e-151 537.7 286 94.1
CARHR042290 Cardamine hirsuta HOM05D007180 ORTHO05D009028 8.3e-150 533.9 286 93.0
Aa31LG10G2730 Aethionema arabicum HOM05D007180 ORTHO05D009028 5.2e-144 514.6 286 89.5
THA.LOC104810533 Tarenaya hassleriana HOM05D007180 ORTHO05D009028 3.2e-141 505.4 284 89.4
THA.LOC104817969 Tarenaya hassleriana HOM05D007180 ORTHO05D009028 1.6e-140 503.1 290 86.9
Ciclev10026017m.g Citrus clementina HOM05D007180 ORTHO05D009028 1.2e-129 466.8 279 81.7
Prupe.3G062900 Prunus persica HOM05D007180 ORTHO05D009028 3.1e-128 462.2 279 80.6
Atru.chr1.3471 Acer truncatum HOM05D007180 ORTHO05D009028 4.0e-128 461.8 279 81.4
MD09G1206800 Malus domestica HOM05D007180 ORTHO05D009028 2.2e-126 456.1 279 78.9
FvH4_6g32020 Fragaria vesca HOM05D007180 ORTHO05D009028 3.7e-126 455.3 279 79.6
FAN14G2528 Fragaria x ananassa HOM05D007180 ORTHO05D009028 3.7e-126 455.3 279 79.6
CiPaw.02G147300 Carya illinoinensis HOM05D007180 ORTHO05D009028 6.4e-126 454.5 273 81.0
Duzib235G1436 Durio zibethinus HOM05D007180 ORTHO05D009028 4.1e-125 451.8 295 76.3
QL05p020883 Quercus lobata HOM05D007180 ORTHO05D009028 5.4e-125 451.4 273 80.6
RcHm_v2.0_Chr2g0139631 Rosa chinensis HOM05D007180 ORTHO05D009028 7.1e-125 451.1 279 79.2
CANSAT56G0293 Cannabis sativa HOM05D007180 ORTHO05D009028 2.1e-124 449.5 279 79.2
Gorai.003G063600 Gossypium raimondii HOM05D007180 ORTHO05D009028 6.0e-124 448.0 280 79.6
GSVIVG01017035001 Vitis vinifera HOM05D007180 ORTHO05D009028 1.0e-123 447.2 279 79.2
FAN02G1418 Fragaria x ananassa HOM05D007180 ORTHO05D009028 1.7e-123 446.4 279 78.5
Gohir.A02G119000 Gossypium hirsutum HOM05D007180 ORTHO05D009028 2.3e-123 446.0 272 81.2
Gohir.D03G059800 Gossypium hirsutum HOM05D007180 ORTHO05D009028 2.5e-122 442.6 280 78.9
Thecc.06G096400 Theobroma cacao HOM05D007180 ORTHO05D009028 2.5e-122 442.6 273 79.9
Cfa002118 Carpinus fangiana HOM05D007180 ORTHO05D009028 4.3e-122 441.8 279 77.1
MD17G1187500 Malus domestica HOM05D007180 ORTHO05D009028 4.3e-122 441.8 279 77.8
TAR383G0610 Trochodendron aralioides HOM05D007180 ORTHO05D009028 5.6e-122 441.4 289 77.5
PGR102G1587 Punica granatum HOM05D007180 ORTHO05D009028 9.5e-122 440.7 294 75.9
Dinv30459 Davidia involucrata HOM05D007180 ORTHO05D009028 1.2e-121 440.3 278 79.1
Lj3g0006974 Lotus japonicus HOM05D007180 ORTHO05D009028 2.1e-121 439.5 301 73.8
Haze_16331 Corylus avellana HOM05D007180 ORTHO05D009028 1.1e-120 437.2 272 77.9
TPR.G35011 Trifolium pratense HOM05D007180 ORTHO05D009028 1.5e-119 433.3 279 76.7
Hma1.2p1_1689F.1_g297640 Hydrangea macrophylla HOM05D007180 ORTHO05D009028 2.6e-119 432.6 279 76.7
Eucgr.F03061 Eucalyptus grandis HOM05D007180 ORTHO05D009028 4.4e-119 431.8 279 76.0
Glyma.08G202600 Glycine max HOM05D007180 ORTHO05D009028 4.4e-119 431.8 279 77.1
Glyma.07G017400 Glycine max HOM05D007180 ORTHO05D009028 1.7e-118 429.9 284 75.7
Medtr8g013830 Medicago truncatula HOM05D007180 ORTHO05D009028 1.4e-117 426.8 279 75.6
Psat4g197600 Pisum sativum HOM05D007180 ORTHO05D009028 1.4e-117 426.8 279 76.0
MELO3C024267.2 Cucumis melo HOM05D007180 ORTHO05D009028 9.2e-117 424.1 278 76.3
Nn3g18173 Nelumbo nucifera HOM05D007180 ORTHO05D009028 1.2e-116 423.7 289 73.4
PSO210G4764 Papaver somniferum HOM05D007180 ORTHO05D009028 1.2e-116 423.7 283 72.4
CsaV3_7G033560 Cucumis sativus L. HOM05D007180 ORTHO05D009028 1.0e-115 420.6 278 75.5
PSO210G1533 Papaver somniferum HOM05D007180 ORTHO05D009028 1.3e-115 420.2 283 71.4
Lalb_Chr04g0262871 Lupinus albus HOM05D007180 ORTHO05D009028 3.9e-115 418.7 278 74.1
Phvul.010G146700 Phaseolus vulgaris HOM05D007180 ORTHO05D009028 5.1e-115 418.3 279 73.5
ClCG09G001780 Citrullus lanatus HOM05D007180 ORTHO05D009028 6.6e-115 417.9 275 76.4
Sed0016027 Sechium edule HOM05D007180 ORTHO05D009028 1.5e-114 416.8 273 75.1
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 5.6e-114 414.8 279 75.3
Actinidia09001 Actinidia chinensis HOM05D007180 ORTHO05D009028 1.2e-113 413.7 288 70.8
Aqoxy7G03907 Aquilegia oxysepala HOM05D007180 ORTHO05D009028 1.2e-113 413.7 287 70.7
Potri.001G187300 Populus trichocarpa HOM05D007180 ORTHO05D009028 1.2e-113 413.7 277 75.1
Actinidia39147 Actinidia chinensis HOM05D007180 ORTHO05D009028 6.9e-112 407.9 288 70.1
TWI75G1824 Tripterygium wilfordii HOM05D007180 ORTHO05D009028 9.9e-111 404.1 279 71.0
Cc04_g02770 Coffea canephora HOM05D007180 ORTHO05D009028 1.3e-110 403.7 279 70.3
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 2.2e-110 402.9 300 68.0
Rhsim12G0201900 Rhododendron simsii HOM05D007180 ORTHO05D009028 3.2e-109 399.1 330 63.0
Oeu060509.1 Olea europaea HOM05D007180 ORTHO05D009028 5.4e-109 398.3 280 70.7
arahy.Tifrunner.gnm1.ann1.BL3LB4 Arachis hypogaea HOM05D007180 ORTHO05D009028 3.9e-107 392.1 304 66.4
EL10Ac9g22108 Beta vulgaris HOM05D007180 ORTHO05D009028 5.1e-107 391.7 269 71.0
Nitab4.5_0001315g0310 Nicotiana tabacum HOM05D007180 ORTHO05D009028 6.6e-107 391.3 281 68.7
PGSC0003DMG401002538 Solanum tuberosum HOM05D007180 ORTHO05D009028 6.6e-107 391.3 287 66.6
AUR62031877 Chenopodium quinoa HOM05D007180 ORTHO05D009028 1.9e-106 389.8 273 69.6
Solyc03g120830.3 Solanum lycopersicum HOM05D007180 ORTHO05D009028 1.9e-106 389.8 281 67.6
Sopen03g039650 Solanum pennellii HOM05D007180 ORTHO05D009028 2.5e-106 389.4 281 67.3
Sc10g0007260 Simmondsia chinensis HOM05D007180 ORTHO05D009028 3.3e-106 389.0 285 68.4
Nitab4.5_0007758g0080 Nicotiana tabacum HOM05D007180 ORTHO05D009028 7.3e-106 387.9 288 67.4
TAR626G1393 Trochodendron aralioides HOM05D007180 ORTHO05D009028 4.8e-105 385.2 290 68.3
CAN.G438.9 Capsicum annuum HOM05D007180 ORTHO05D009028 8.1e-105 384.4 281 67.3
Lsat_1_v5_gn_4_100560 Lactuca sativa HOM05D007180 ORTHO05D009028 1.8e-104 383.3 309 61.5
Migut.I00923 Erythranthe guttata HOM05D007180 ORTHO05D009028 4.0e-104 382.1 280 66.1
SalBow2G0157 Salvia bowleyana HOM05D007180 ORTHO05D009028 5.3e-104 381.7 293 62.1
AUR62022171 Chenopodium quinoa HOM05D007180 ORTHO05D009028 1.3e-102 377.1 301 63.5
HanXRQChr09g0275941 Helianthus annuus HOM05D007180 ORTHO05D009028 6.4e-102 374.8 285 62.1
Lj5A56T50 Lonicera japonica HOM05D007180 ORTHO05D009028 4.6e-100 368.6 241 77.2
Peaxi162Scf00038g00837 Petunia axillaris HOM05D007180 ORTHO05D009028 7.9e-100 367.9 287 63.8
Manes.11G035900 Manihot esculenta HOM05D007180 ORTHO05D009028 9.9e-95 350.9 278 62.6
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 2.4e-93 346.3 241 72.2
Os11g0466300 Oryza sativa ssp. japonica HOM05D007180 ORTHO05D009028 6.9e-88 328.2 277 56.3
Zm00001eb156840 Zea mays HOM05D007180 ORTHO05D009028 3.8e-86 322.4 285 55.4
Hma1.2p1_1689F.1_g297650 Hydrangea macrophylla HOM05D007180 ORTHO05D009028 6.5e-86 321.6 203 79.8
Hund06649 Selenicereus undatus HOM05D007180 ORTHO05D009028 1.6e-84 317.0 268 61.6
vmacro16982 Vaccinium macrocarpon HOM05D007180 ORTHO05D009028 1.6e-84 317.0 282 58.2
CSS0022642 Camellia sinensis var. sinensis HOM05D007180 ORTHO05D009028 3.0e-83 312.8 197 77.7
arahy.Tifrunner.gnm1.ann1.Z8Y5NA Arachis hypogaea HOM05D007180 ORTHO05D009028 1.4e-80 303.9 305 55.7
AagrBONN_evm.TU.Sc2ySwM_344.297 Anthoceros agrestis HOM05D007180 ORTHO05D009028 2.4e-80 303.1 296 49.0
SGA_v2.0_scaffold5G02533 Striga asiatica HOM05D007180 ORTHO05D009028 6.9e-80 301.6 230 67.0
Mapoly0061s0142 Marchantia polymorpha HOM05D007180 ORTHO05D009028 5.0e-78 295.4 277 50.5
SEGI_07196 Sequoiadendron giganteum HOM05D007180 ORTHO05D009028 2.1e-76 290.0 282 49.3
SEGI_18381 Sequoiadendron giganteum HOM05D007180 ORTHO05D009028 2.1e-76 290.0 282 49.3
Pp3c3_33050 Physcomitrium patens HOM05D007180 ORTHO05D009028 2.0e-74 283.5 277 49.5
ATR0705G160 Amborella trichopoda HOM05D007180 ORTHO05D009028 1.3e-73 280.8 225 61.3
Pp3c4_2280 Physcomitrium patens HOM05D007180 ORTHO05D009028 3.7e-73 279.3 277 48.7
ECA232G5021 Erigeron canadensis HOM05D000415 ORTHO05D001916 1.2e-71 274.2 192 67.7
Pp3c27_6190 Physcomitrium patens HOM05D007180 ORTHO05D009028 5.9e-71 271.9 271 49.8
Pp3c10_19810 Physcomitrium patens HOM05D007180 ORTHO05D009028 5.0e-70 268.9 277 48.0
Pp3c5_1000 Physcomitrium patens HOM05D007180 ORTHO05D009028 1.9e-69 266.9 277 47.3
Pp3c12_14730 Physcomitrium patens HOM05D007180 ORTHO05D009028 4.7e-68 262.3 276 47.8
unitig_748.g7435 Utricularia gibba HOM05D007180 ORTHO05D009028 1.7e-62 243.8 287 43.9
DCAR_016200 Daucus carota HOM05D007180 ORTHO05D009028 2.0e-55 220.3 280 44.3
SMO364G0215 Selaginella moellendorffii HOM05D007180 ORTHO05D009028 3.6e-52 209.5 199 51.8
Cpa.g.sc109.35 Carica papaya HOM05D007180 ORTHO05D009028 6.1e-52 208.8 272 45.6
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 1.5e-42 177.6 266 38.7
FAN09G3228 Fragaria x ananassa HOM05D007180 ORTHO05D009028 4.4e-26 122.9 73 74.0
MBI04_g27060_MAGBIO Magnolia biondii HOM05D007180 ORTHO05D009028 1.7e-17 94.4 72 62.5


User provided reference genes

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