Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.2e-261 906.0 459 100.0
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 5.9e-261 903.7 459 99.8
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 6.4e-255 883.6 459 98.3
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 4.3e-251 870.9 459 96.5
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 7.8e-237 823.5 459 92.8
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 2.5e-227 792.0 460 89.1
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 5.6e-227 790.8 464 88.1
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 9.6e-227 790.0 463 88.8
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 2.6e-224 781.9 463 88.8
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 1.3e-223 779.6 460 88.3
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 6.4e-223 777.3 460 88.0
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 2.5e-219 765.4 462 85.7
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 1.6e-218 762.7 457 86.2
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 5.3e-217 757.7 459 86.5
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 4.9e-207 724.5 462 81.0
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 2.3e-204 715.7 361 100.0
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 2.3e-204 715.7 361 100.0
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-185 652.9 344 95.3
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 2.4e-185 652.5 365 88.2
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.2e-184 650.2 465 74.6
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.7e-183 646.4 366 86.9
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 2.9e-183 645.6 362 87.6
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 3.8e-183 645.2 366 86.6
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 5.0e-183 644.8 366 86.6
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 3.2e-182 642.1 362 87.6
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 3.6e-181 638.6 433 78.3
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 4.6e-181 638.3 363 86.2
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.3e-180 636.0 396 82.1
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 5.1e-180 634.8 362 88.4
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 5.1e-180 634.8 375 84.5
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 8.8e-180 634.0 374 84.2
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 2.0e-179 632.9 362 88.4
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 3.3e-179 632.1 366 87.2
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 7.4e-179 630.9 378 83.9
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.7e-179 630.6 366 86.3
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 9.7e-179 630.6 366 86.3
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 1.3e-178 630.2 468 72.2
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 1.3e-178 630.2 362 87.3
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.3e-178 630.2 362 87.3
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.2e-178 627.5 362 86.7
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 1.1e-177 627.1 376 83.0
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 1.4e-177 626.7 361 85.9
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 1.8e-177 626.3 414 77.1
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 2.4e-177 625.9 365 84.7
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 3.1e-177 625.5 371 84.4
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 4.1e-177 625.2 362 85.4
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 3.4e-176 622.1 365 84.9
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 7.7e-176 620.9 369 83.5
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 7.7e-176 620.9 368 84.8
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 1.3e-175 620.2 361 83.1
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.7e-175 619.8 394 79.4
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.7e-175 619.8 359 86.4
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.7e-175 619.8 366 83.9
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 2.9e-175 619.0 406 78.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 3.8e-175 618.6 412 76.5
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 5.0e-175 618.2 407 77.4
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 6.5e-175 617.8 378 82.3
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.9e-174 616.3 363 84.0
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 9.4e-174 614.0 391 78.5
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.1e-173 612.8 396 78.0
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 4.7e-173 611.7 384 80.2
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 7.9e-173 610.9 364 84.1
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 2.3e-172 609.4 390 78.7
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 4.4e-171 605.1 385 80.3
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 5.7e-171 604.7 366 82.0
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 1.3e-170 603.6 445 71.9
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 1.7e-170 603.2 362 81.5
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 3.7e-170 602.1 360 81.4
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 3.7e-170 602.1 401 76.8
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 3.7e-170 602.1 376 80.6
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 4.8e-170 601.7 366 86.1
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 8.2e-170 600.9 376 80.3
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 1.8e-169 599.7 359 84.1
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.8e-167 592.0 350 83.7
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 3.2e-166 589.0 344 84.0
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 7.2e-166 587.8 344 84.9
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 9.4e-166 587.4 360 80.8
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 9.4e-166 587.4 353 81.9
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.1e-165 586.3 373 79.9
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 3.6e-165 585.5 364 81.0
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 1.0e-164 583.9 344 84.6
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.0e-164 583.9 366 79.2
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 1.5e-163 580.1 358 81.3
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 4.4e-163 578.6 378 77.2
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 5.7e-163 578.2 351 81.5
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.7e-162 576.6 391 75.2
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.1e-161 573.9 391 74.4
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 9.1e-161 570.9 380 77.1
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 2.7e-160 569.3 338 83.4
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 7.7e-160 567.8 337 82.8
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 1.0e-159 567.4 468 65.0
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.0e-159 567.4 368 78.8
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.7e-159 566.6 439 68.3
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 2.2e-159 566.2 527 59.8
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 8.5e-159 564.3 360 76.9
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 8.8e-156 554.3 339 82.0
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 8.5e-151 537.7 379 74.1
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 5.2e-148 528.5 312 84.3
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 8.8e-148 527.7 361 72.9
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 2.6e-147 526.2 297 87.5
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.4e-147 525.8 403 69.5
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 9.8e-147 524.2 433 64.7
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 1.4e-145 520.4 328 80.2
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 2.4e-145 519.6 301 85.0
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 1.5e-142 510.4 312 79.5
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 5.6e-142 508.4 384 66.9
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 2.8e-141 506.1 339 72.6
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.3e-140 503.1 338 72.5
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 6.8e-140 501.5 353 70.8
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 8.6e-135 484.6 282 84.0
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 8.0e-133 478.0 381 63.3
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 4.4e-131 472.2 271 86.7
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 7.5e-131 471.5 338 70.4
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.1e-129 467.6 361 68.7
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 9.9e-123 444.5 299 77.9
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 2.1e-120 436.8 303 73.9
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 9.5e-118 427.9 260 81.2
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 7.6e-115 418.3 251 80.9
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 4.2e-97 359.4 208 85.6
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 5.6e-94 349.0 286 67.1
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 7.6e-91 338.6 186 92.5
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 7.1e-89 332.0 185 86.5
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 9.3e-81 305.1 393 50.4
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 1.0e-74 285.0 347 45.0
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 5.5e-73 279.3 335 44.8
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 5.1e-63 246.1 132 88.6
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.2e-61 240.7 143 84.6
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 2.7e-56 223.8 334 36.2
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 3.6e-56 223.4 124 87.1
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 2.9e-50 203.8 374 37.4
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 5.5e-41 172.9 103 81.6
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 8.8e-39 165.6 130 70.8
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.4e-38 163.7 109 77.1
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.3e-37 161.8 124 69.4
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 3.3e-33 147.1 80 93.8
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 3.3e-33 147.1 80 93.8
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 3.3e-33 147.1 80 93.8
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 5.2e-31 139.8 80 88.8
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 5.2e-31 139.8 80 88.8
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 2.0e-30 137.9 80 87.5
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 1.7e-29 134.8 84 78.6
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 1.8e-28 131.3 101 62.4
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 7.8e-27 125.9 78 74.4
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 2.9e-26 124.0 77 83.1
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 3.3e-25 120.6 107 61.7
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.1e-24 117.9 64 87.5
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 7.5e-22 109.4 88 69.3
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 1.1e-20 105.5 125 44.0
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 7.0e-20 102.8 64 82.8
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 8.9e-15 85.9 74 63.5
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 8.9e-15 85.9 54 85.2
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 8.3e-13 79.3 43 90.7
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 7.3e-09 66.2 36 86.1
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 9.5e-09 65.9 40 75.0
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 8.9e-07 59.3 37 70.3
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 1.2e-06 58.9 63 50.8
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 2.0e-06 58.2 33 81.8


User provided reference genes

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