Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43295 Brassica carinata HOM05D003553 ORTHO05D005072 5.3e-135 484.6 282 100.0
C06p06430 Brassica napus HOM05D003553 ORTHO05D027688 1.3e-61 240.7 280 53.6
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 1.4e-31 141.0 124 64.5
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 3.5e-30 136.3 123 63.4
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 3.5e-30 136.3 125 61.6
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 6.0e-30 135.6 124 62.1
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 1.0e-29 134.8 124 61.3
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 1.0e-29 134.8 124 61.3
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 1.7e-29 134.0 128 60.9
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 1.7e-29 134.0 128 60.9
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.7e-29 134.0 128 60.2
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 3.0e-29 133.3 124 60.5
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 5.1e-29 132.5 124 61.3
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 5.1e-29 132.5 124 61.3
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 5.1e-29 132.5 123 61.0
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 1.5e-28 131.0 124 59.7
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 3.3e-28 129.8 124 57.3
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 7.4e-28 128.6 124 58.9
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 7.4e-28 128.6 124 58.1
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 7.4e-28 128.6 128 56.2
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 7.4e-28 128.6 128 56.2
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 7.4e-28 128.6 128 56.2
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 7.4e-28 128.6 128 56.2
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 6.2e-27 125.6 122 57.4
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 6.9e-26 122.1 123 56.1
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 4.5e-25 119.4 127 54.3
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 4.5e-25 119.4 123 53.7
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 1.7e-24 117.5 127 53.5
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 2.9e-24 116.7 127 53.5
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 2.9e-24 116.7 123 54.5
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 1.1e-23 114.8 127 51.2
BolC1t02585H Brassica oleracea HOM05D000745 ORTHO05D005072 1.9e-23 114.0 110 58.2
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 2.4e-23 113.6 123 51.2
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 2.4e-23 113.6 127 50.4
BcaB02g10729 Brassica carinata HOM05D003553 ORTHO05D016026 3.2e-23 113.2 64 87.5
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 1.2e-22 111.3 130 48.5
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 1.2e-22 111.3 130 48.5
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 2.1e-22 110.5 126 50.8
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 2.7e-22 110.2 130 47.7
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 2.7e-22 110.2 130 47.7
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 2.7e-22 110.2 130 47.7
BcaC06g35156 Brassica carinata HOM05D003553 ORTHO05D005072 1.8e-21 107.5 127 54.3
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 5.1e-21 105.9 127 50.4
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 8.7e-21 105.1 127 46.5
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 4.3e-20 102.8 127 49.6
BcaB02g09857 Brassica carinata HOM05D003553 ORTHO05D016026 6.5e-16 89.0 91 62.6
C07p19270 Brassica napus HOM05D003553 ORTHO05D016026 1.0e-13 81.6 62 72.6
BolC7t42440H Brassica oleracea HOM05D003553 ORTHO05D016026 1.0e-13 81.6 62 72.6
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 1.0e-13 81.6 129 36.4
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 5.1e-13 79.3 129 38.0
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.1e-12 78.2 126 38.9
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 1.5e-12 77.8 129 38.8
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 1.5e-12 77.8 159 34.0
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 1.9e-12 77.4 129 34.9
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 1.9e-12 77.4 128 39.1
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.5e-12 77.0 126 38.9
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.5e-12 77.0 122 37.7
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 3.3e-12 76.6 128 34.4
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 3.3e-12 76.6 126 38.1
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 3.3e-12 76.6 126 38.1
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 4.3e-12 76.3 129 34.9
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 5.7e-12 75.9 129 36.4
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 7.4e-12 75.5 60 65.0
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 7.4e-12 75.5 126 37.3
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 7.4e-12 75.5 128 35.9
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 7.4e-12 75.5 119 36.1
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 1.3e-11 74.7 121 37.2
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 1.3e-11 74.7 121 37.2
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 1.6e-11 74.3 125 33.6
Os09g0361500 Oryza sativa ssp. japonica HOM05D003553 ORTHO05D005072 1.6e-11 74.3 127 36.2
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 2.1e-11 73.9 128 35.9
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 4.8e-11 72.8 129 35.7
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 6.3e-11 72.4 129 36.4
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 6.3e-11 72.4 125 36.0
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 8.2e-11 72.0 129 33.3
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 8.2e-11 72.0 126 35.7
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 8.2e-11 72.0 124 37.1
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 1.1e-10 71.6 129 36.4
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 1.1e-10 71.6 129 35.7
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 1.1e-10 71.6 126 34.9
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 1.1e-10 71.6 125 35.2
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 1.4e-10 71.2 129 33.3
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 2.4e-10 70.5 129 34.1
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 2.4e-10 70.5 129 34.1
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 3.1e-10 70.1 126 36.5
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 4.1e-10 69.7 122 36.1
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 5.3e-10 69.3 125 35.2
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 6.9e-10 68.9 126 36.5
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 6.9e-10 68.9 119 35.3
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 6.9e-10 68.9 119 35.3
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 9.0e-10 68.6 129 32.6
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 9.0e-10 68.6 129 32.6
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 1.5e-09 67.8 128 33.6
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 1.5e-09 67.8 126 33.3
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 2.0e-09 67.4 129 31.8
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 2.0e-09 67.4 126 35.7
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 2.0e-09 67.4 129 32.6
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 2.6e-09 67.0 128 34.4
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 3.4e-09 66.6 125 32.0
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 7.6e-09 65.5 125 36.8
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 7.6e-09 65.5 130 32.3
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 7.6e-09 65.5 125 33.6
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 7.6e-09 65.5 128 33.6
Sc23g0004630 Simmondsia chinensis HOM05D003553 ORTHO05D005072 7.6e-09 65.5 127 33.9
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 7.6e-09 65.5 129 32.6
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 1.0e-08 65.1 129 31.0
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 1.0e-08 65.1 129 32.6
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 1.3e-08 64.7 129 33.3
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 1.7e-08 64.3 129 31.0
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 1.7e-08 64.3 130 33.1
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 2.2e-08 63.9 129 32.6
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 2.9e-08 63.5 119 35.3
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 3.8e-08 63.2 128 36.7
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 3.8e-08 63.2 129 31.8
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 3.8e-08 63.2 117 34.2
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 5.0e-08 62.8 129 31.0
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 6.5e-08 62.4 119 35.3
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 8.4e-08 62.0 119 35.3
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 1.4e-07 61.2 132 33.3
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.4e-07 61.2 128 31.2
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 1.4e-07 61.2 126 34.1
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 2.5e-07 60.5 122 33.6
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 2.5e-07 60.5 123 35.0
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 5.5e-07 59.3 128 30.5
MSTRG.11397 Avicennia marina HOM05D003553 ORTHO05D005072 7.2e-07 58.9 118 33.9
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 7.2e-07 58.9 130 31.5
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 7.2e-07 58.9 161 29.2
TAR622G0519 Trochodendron aralioides HOM05D003553 ORTHO05D005072 9.3e-07 58.5 129 30.2
BcaC03g13942 Brassica carinata HOM05D000313 ORTHO05D000065 1.6e-06 57.8 40 67.5
BcaC03g15391 Brassica carinata HOM05D000313 ORTHO05D000065 1.6e-06 57.8 40 67.5
BolC7t43562H Brassica oleracea HOM05D000313 ORTHO05D000065 1.6e-06 57.8 40 67.5
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 2.7e-06 57.0 124 33.1
BcaB02g11516 Brassica carinata HOM05D000313 ORTHO05D000065 2.7e-06 57.0 40 65.0
BcaC01g00346 Brassica carinata HOM05D009862 ORTHO05D018588 3.5e-06 56.6 37 70.3
C03p78740 Brassica napus HOM05D009862 ORTHO05D018588 3.5e-06 56.6 37 70.3
BcaC03g16635 Brassica carinata HOM05D000313 ORTHO05D000065 4.6e-06 56.2 40 65.0
C02p44680 Brassica napus HOM05D000313 ORTHO05D000065 4.6e-06 56.2 40 65.0
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 4.6e-06 56.2 122 31.1
HPP92_007667 Vanilla planifolia HOM05D003553 ORTHO05D005072 4.6e-06 56.2 128 28.1
A03p24270 Brassica napus HOM05D000313 ORTHO05D000065 7.9e-06 55.5 40 65.0
A05p12350 Brassica napus HOM05D009862 ORTHO05D016026 7.9e-06 55.5 37 70.3
BolC3t21354H Brassica oleracea HOM05D009862 ORTHO05D033657 7.9e-06 55.5 37 67.6
BraA05t20174Z Brassica rapa HOM05D009862 ORTHO05D018588 7.9e-06 55.5 37 70.3
BraA07t28641Z Brassica rapa HOM05D009862 ORTHO05D033657 7.9e-06 55.5 37 70.3


User provided reference genes

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