Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43294 Brassica carinata HOM05D003553 ORTHO05D027688 3.5e-74 281.6 144 100.0
C06p06430 Brassica napus HOM05D003553 ORTHO05D027688 3.5e-74 281.6 144 100.0
BcaC06g34281 Brassica carinata HOM05D003553 ORTHO05D027688 1.2e-50 203.4 140 77.9
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 3.2e-35 152.1 135 63.0
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 3.2e-35 152.1 135 63.0
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 3.2e-35 152.1 135 63.0
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 3.2e-35 152.1 135 63.0
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 7.1e-35 151.0 135 62.2
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 1.6e-34 149.8 135 62.2
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 3.5e-34 148.7 135 61.5
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 3.5e-34 148.7 135 61.5
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 6.0e-34 147.9 135 60.7
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 7.8e-34 147.5 135 60.7
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 3.0e-33 145.6 135 61.5
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 3.9e-33 145.2 135 59.3
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 8.6e-33 144.1 135 60.0
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 8.6e-33 144.1 135 60.0
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 8.6e-33 144.1 135 60.0
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 1.1e-32 143.7 135 59.3
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.9e-32 142.9 134 59.7
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.9e-32 142.9 135 58.5
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 9.5e-32 140.6 135 57.8
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 2.8e-31 139.0 134 57.5
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 4.7e-31 138.3 135 57.0
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 6.2e-31 137.9 133 56.4
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 8.1e-31 137.5 133 57.1
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.1e-30 137.1 133 57.9
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 1.4e-30 136.7 135 55.6
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 1.8e-30 136.3 135 57.8
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 5.2e-30 134.8 133 54.1
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 8.9e-30 134.0 133 54.9
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 2.6e-29 132.5 133 54.1
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 3.4e-29 132.1 133 54.9
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 3.4e-29 132.1 133 54.9
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 3.4e-29 132.1 133 54.1
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 3.4e-29 132.1 133 54.9
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 3.4e-29 132.1 133 54.1
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 3.4e-29 132.1 133 54.9
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 4.4e-29 131.7 136 52.9
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 7.6e-29 131.0 133 54.9
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 7.6e-29 131.0 133 54.1
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 1.7e-28 129.8 134 54.5
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 2.2e-28 129.4 135 54.8
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 1.4e-27 126.7 135 53.3
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 3.0e-25 119.0 133 47.4
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 6.6e-25 117.9 133 47.4
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 6.6e-25 117.9 133 48.1
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 1.5e-24 116.7 133 45.1
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.5e-24 116.7 133 47.4
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.9e-24 116.3 133 47.4
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.9e-24 116.3 133 47.4
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 3.3e-24 115.5 133 46.6
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 4.3e-24 115.2 133 45.9
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 5.6e-24 114.8 133 46.6
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 9.6e-24 114.0 133 45.9
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 1.2e-23 113.6 133 44.4
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 1.6e-23 113.2 133 47.4
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 2.8e-23 112.5 133 46.6
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 3.6e-23 112.1 137 47.4
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 4.7e-23 111.7 133 45.1
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 6.2e-23 111.3 134 45.5
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 8.1e-23 110.9 134 41.8
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 1.1e-22 110.5 134 41.8
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 1.1e-22 110.5 133 42.1
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 1.8e-22 109.8 133 43.6
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 2.4e-22 109.4 133 41.4
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 3.1e-22 109.0 133 44.4
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 4.0e-22 108.6 133 42.9
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 5.2e-22 108.2 133 42.1
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 5.2e-22 108.2 134 44.8
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 9.0e-22 107.5 133 42.9
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 1.2e-21 107.1 134 43.3
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 1.5e-21 106.7 133 42.9
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 1.5e-21 106.7 133 42.9
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 2.0e-21 106.3 133 42.9
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 2.0e-21 106.3 133 43.6
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 2.0e-21 106.3 133 43.6
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 2.6e-21 105.9 135 44.4
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 2.6e-21 105.9 133 43.6
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 3.4e-21 105.5 134 43.3
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 3.4e-21 105.5 133 42.9
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 4.4e-21 105.1 134 43.3
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 4.4e-21 105.1 133 43.6
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 4.4e-21 105.1 133 45.9
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 4.4e-21 105.1 133 42.1
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 5.8e-21 104.8 133 42.1
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 5.8e-21 104.8 133 42.1
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 9.9e-21 104.0 133 43.6
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 1.3e-20 103.6 133 42.1
BolC8t48344H Brassica oleracea HOM05D003553 ORTHO05D027688 1.7e-20 103.2 116 54.3
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 1.7e-20 103.2 133 44.4
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 1.7e-20 103.2 134 42.5
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 2.2e-20 102.8 134 44.0
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 2.2e-20 102.8 137 43.8
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 2.2e-20 102.8 139 44.6
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 4.9e-20 101.7 134 41.8
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 4.9e-20 101.7 134 42.5
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 6.4e-20 101.3 134 44.8
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 6.4e-20 101.3 134 41.8
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 8.4e-20 100.9 131 43.5
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 1.9e-19 99.8 133 41.4
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 2.4e-19 99.4 135 43.7
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 2.4e-19 99.4 134 41.0
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 3.2e-19 99.0 134 41.0
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 3.2e-19 99.0 133 42.1
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 3.2e-19 99.0 152 40.1
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 4.2e-19 98.6 134 41.8
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 5.4e-19 98.2 134 38.8
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 7.1e-19 97.8 134 38.8
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 1.2e-18 97.1 135 43.0
Medtr7g011400 Medicago truncatula HOM05D003553 ORTHO05D005072 3.5e-18 95.5 133 40.6
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 4.6e-18 95.1 133 42.9
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 4.6e-18 95.1 133 38.3
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 4.6e-18 95.1 133 39.8
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 1.3e-17 93.6 134 41.8
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 2.3e-17 92.8 133 37.6
HPP92_007666 Vanilla planifolia HOM05D003553 ORTHO05D005072 3.9e-17 92.0 113 45.1
MD14G1195400 Malus domestica HOM05D003553 ORTHO05D005072 6.6e-17 91.3 153 37.3
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 4.3e-16 88.6 135 36.3
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 7.3e-16 87.8 133 40.6
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 9.6e-16 87.4 133 38.3
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 1.6e-15 86.7 134 41.8
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 1.2e-13 80.5 133 39.8
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 1.5e-13 80.1 61 59.0
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 3.4e-13 79.0 131 35.9
TAR622G0338 Trochodendron aralioides HOM05D003553 ORTHO05D005072 9.9e-13 77.4 49 63.3
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 1.7e-12 76.6 131 35.9
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.7e-12 76.6 131 35.9
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 6.4e-12 74.7 117 37.6
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 4.2e-11 72.0 134 34.3
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 4.6e-10 68.6 131 31.3
BcaB01g02747 Brassica carinata HOM05D003553 ORTHO05D039541 1.8e-09 66.6 34 79.4
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 8.7e-09 64.3 131 31.3
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 2.1e-07 59.7 40 57.5
CARHR035090 Cardamine hirsuta HOM05D003553 ORTHO05D040806 2.8e-07 59.3 42 59.5
CARHR115670 Cardamine hirsuta HOM05D003553 ORTHO05D005072 2.8e-07 59.3 40 80.0
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 5.3e-06 55.1 46 58.7
C03p57060 Brassica napus HOM05D003553 ORTHO05D040806 6.9e-06 54.7 32 71.9
BolC5t31102H Brassica oleracea HOM05D003553 ORTHO05D005072 6.9e-06 54.7 36 69.4


User provided reference genes

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