Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 3.1e-232 808.1 420 100.0
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 3.9e-227 791.2 420 97.4
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 3.9e-227 791.2 420 97.4
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 3.9e-227 791.2 420 97.4
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 3.3e-226 788.1 420 96.9
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 3.3e-226 788.1 420 96.9
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.6e-220 769.2 425 94.6
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 6.3e-217 757.3 422 92.9
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 4.1e-216 754.6 422 92.4
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 2.0e-215 752.3 420 93.1
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 2.6e-215 751.9 422 92.2
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 2.9e-214 748.4 424 92.0
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 9.4e-213 743.4 424 91.0
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 4.4e-210 734.6 434 91.5
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 4.8e-209 731.1 421 91.4
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 5.9e-207 724.2 421 91.4
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 1.6e-204 716.1 420 89.0
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 3.1e-200 701.8 422 87.4
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 2.9e-190 668.7 412 84.5
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 6.5e-190 667.5 412 84.7
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 4.7e-188 661.4 429 82.8
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.8e-187 659.4 428 80.8
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 3.4e-186 655.2 427 81.0
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 4.9e-185 651.4 427 81.5
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 1.6e-183 646.4 428 80.4
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 2.3e-182 642.5 412 81.6
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 2.9e-182 642.1 409 82.9
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 3.8e-182 641.7 412 81.6
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 6.6e-182 641.0 425 79.5
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 1.1e-181 640.2 423 80.1
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 1.1e-181 640.2 424 80.2
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 1.9e-181 639.4 422 79.4
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 6.1e-180 634.4 428 80.1
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 9.8e-178 627.1 423 79.0
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 1.7e-177 626.3 425 77.4
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 2.3e-174 615.9 409 79.0
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 3.3e-173 612.1 416 77.4
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 7.3e-173 610.9 426 76.3
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 2.8e-172 609.0 425 76.9
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 6.2e-172 607.8 420 76.7
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 8.0e-172 607.4 428 76.9
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.8e-171 606.3 425 76.5
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 2.3e-171 605.9 420 77.6
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 3.1e-171 605.5 454 73.6
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 4.0e-171 605.1 425 76.5
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.5e-170 603.2 412 77.9
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 2.0e-170 602.8 421 75.5
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 3.4e-170 602.1 428 75.2
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 4.4e-170 601.7 424 77.4
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 4.4e-170 601.7 424 75.7
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 4.4e-170 601.7 444 74.1
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 4.9e-169 598.2 412 75.5
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 1.1e-168 597.0 424 77.1
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 4.1e-168 595.1 419 75.9
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 5.4e-168 594.7 426 75.1
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 1.2e-167 593.6 425 75.8
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 1.2e-167 593.6 423 74.9
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 1.2e-167 593.6 422 74.6
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 1.6e-167 593.2 418 76.6
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 2.0e-167 592.8 424 75.9
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.0e-167 592.8 426 74.2
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 2.7e-167 592.4 425 75.5
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 2.7e-167 592.4 412 74.8
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 3.5e-167 592.0 419 74.2
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 3.9e-166 588.6 426 73.9
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 5.0e-166 588.2 416 74.5
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 6.6e-166 587.8 469 69.5
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 1.5e-165 586.6 436 73.9
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 4.3e-165 585.1 420 74.5
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 5.6e-165 584.7 430 74.7
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 9.5e-165 583.9 425 73.4
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 9.5e-165 583.9 419 73.0
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 3.6e-164 582.0 411 74.0
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 3.6e-164 582.0 434 73.3
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 1.8e-163 579.7 420 73.8
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 2.3e-163 579.3 420 74.0
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 2.3e-163 579.3 397 78.3
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 8.9e-163 577.4 410 75.4
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 8.9e-163 577.4 424 73.1
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 1.2e-162 577.0 420 73.3
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 2.6e-162 575.9 427 73.1
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 4.4e-162 575.1 441 72.1
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 4.4e-162 575.1 419 73.7
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 5.8e-162 574.7 420 73.8
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 7.5e-162 574.3 426 74.2
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 3.2e-160 568.9 420 74.3
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 5.4e-160 568.2 424 72.2
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 7.1e-160 567.8 443 72.2
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 1.2e-159 567.0 418 74.4
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 5.1e-158 561.6 460 67.4
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.1e-157 560.5 427 70.5
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.9e-157 559.7 421 70.1
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 3.6e-156 555.4 373 78.6
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.7e-153 546.6 426 69.5
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 1.7e-153 546.6 410 71.5
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 3.8e-153 545.4 458 66.4
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 1.6e-151 540.0 419 71.1
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.1e-149 533.9 427 67.0
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 4.3e-149 531.9 426 70.2
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 2.1e-148 529.6 506 60.5
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 2.1e-148 529.6 382 73.3
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 6.9e-147 524.6 426 69.7
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 1.3e-145 520.4 425 69.9
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 1.3e-145 520.4 425 67.1
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 3.0e-142 509.2 421 68.2
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 5.1e-142 508.4 511 59.9
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.9e-141 506.5 411 69.1
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 4.3e-141 505.4 385 74.8
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 4.0e-139 498.8 483 62.5
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 1.3e-137 493.8 413 67.3
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.1e-136 490.7 369 73.7
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 8.7e-134 481.1 379 72.8
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 3.1e-131 472.6 427 61.8
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 3.5e-127 459.1 399 61.9
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 5.1e-126 455.3 427 60.2
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 1.2e-122 444.1 441 55.8
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 2.6e-122 443.0 436 59.2
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 1.0e-121 441.0 361 66.8
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 5.7e-117 425.2 386 63.7
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 4.8e-116 422.2 315 72.4
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.4e-115 419.9 411 58.9
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 3.1e-115 419.5 424 56.1
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 7.6e-114 414.8 342 67.0
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 5.0e-113 412.1 426 56.1
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 3.0e-110 402.9 423 58.4
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 6.5e-105 385.2 432 52.5
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 4.5e-98 362.5 368 58.7
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 1.2e-69 268.1 377 41.6
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 2.9e-65 253.4 212 66.0
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.2e-63 248.1 416 38.5
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 6.0e-34 149.4 201 49.3
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 9.9e-29 132.1 84 77.4
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 5.1e-17 93.2 55 81.8
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 5.6e-16 89.7 43 93.0
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 5.6e-16 89.7 43 93.0
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 3.7e-07 60.5 53 62.3


User provided reference genes

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