Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43220 Brassica carinata HOM05D006696 ORTHO05D008683 0.0e+00 1261.5 615 100.0
BolC6t35679H Brassica oleracea HOM05D006696 ORTHO05D008683 0.0e+00 1261.5 615 100.0
C06p05680 Brassica napus HOM05D006696 ORTHO05D008683 0.0e+00 1237.6 615 98.2
A06p03080 Brassica napus HOM05D006696 ORTHO05D008683 0.0e+00 1172.9 616 94.2
BraA06t23521Z Brassica rapa HOM05D006696 ORTHO05D008683 0.0e+00 1135.9 616 93.0
BcaB07g33486 Brassica carinata HOM05D006696 ORTHO05D008683 0.0e+00 1124.8 617 90.6
Sp1g37340 Schrenkiella parvula HOM05D006696 ORTHO05D008683 6.2e-306 1053.5 636 83.0
Thhalv10007140m.g Eutrema salsugineum HOM05D006696 ORTHO05D008683 3.1e-273 944.9 629 76.5
AL1G10260 Arabidopsis lyrata HOM05D006696 ORTHO05D008683 6.5e-271 937.2 629 75.8
AT1G02020 Arabidopsis thaliana HOM05D006696 ORTHO05D008683 1.4e-268 929.5 636 74.5
Carub.0001s0021 Capsella rubella HOM05D006696 ORTHO05D008683 3.1e-265 918.3 619 75.0
Aa31LG1G11340 Aethionema arabicum HOM05D006696 ORTHO05D008683 2.8e-258 895.2 639 73.1
THA.LOC104814083 Tarenaya hassleriana HOM05D006696 ORTHO05D008683 4.7e-253 877.9 644 69.9
COL.COLO4_24599 Corchorus olitorius HOM05D006696 ORTHO05D008683 3.0e-244 848.6 615 68.8
Thecc.08G173400 Theobroma cacao HOM05D006696 ORTHO05D008683 4.0e-244 848.2 615 69.6
Manes.01G267400 Manihot esculenta HOM05D006696 ORTHO05D008683 3.1e-241 838.6 618 68.1
TWI14G1225 Tripterygium wilfordii HOM05D006696 ORTHO05D008683 4.1e-241 838.2 589 70.8
Gohir.D13G120600 Gossypium hirsutum HOM05D006696 ORTHO05D008683 2.0e-240 835.9 627 67.0
Gorai.013G134800 Gossypium raimondii HOM05D006696 ORTHO05D008683 4.5e-240 834.7 627 66.8
Rhsim01G0149400 Rhododendron simsii HOM05D006696 ORTHO05D008683 3.8e-239 831.6 615 66.5
Gohir.A13G117300 Gossypium hirsutum HOM05D006696 ORTHO05D008683 3.2e-238 828.6 644 65.5
CSS0014714 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 4.7e-237 824.7 597 68.7
Ciclev10019231m.g Citrus clementina HOM05D006696 ORTHO05D008683 6.1e-237 824.3 639 65.3
Nn6g34076 Nelumbo nucifera HOM05D006696 ORTHO05D008683 1.0e-236 823.5 592 68.9
CSS0026641 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 6.8e-236 820.8 597 68.3
Potri.002G146100 Populus trichocarpa HOM05D006696 ORTHO05D008683 1.5e-235 819.7 610 66.9
Hma1.2p1_0301F.1_g118560 Hydrangea macrophylla HOM05D006696 ORTHO05D008683 3.4e-235 818.5 592 68.6
Peaxi162Scf00013g03019 Petunia axillaris HOM05D006696 ORTHO05D008683 7.5e-235 817.4 584 68.2
CAN.G388.34 Capsicum annuum HOM05D006696 ORTHO05D008683 1.3e-234 816.6 585 68.5
Cc02_g24120 Coffea canephora HOM05D006696 ORTHO05D008683 1.3e-234 816.6 586 68.8
Sabra02G0113800 Salix brachista HOM05D006696 ORTHO05D008683 2.2e-234 815.8 610 66.7
PGSC0003DMG400025962 Solanum tuberosum HOM05D006696 ORTHO05D008683 5.4e-233 811.2 584 68.5
CiPaw.01G264000 Carya illinoinensis HOM05D006696 ORTHO05D008683 1.6e-232 809.7 640 65.0
Sopen01g036880 Solanum pennellii HOM05D006696 ORTHO05D008683 2.7e-232 808.9 584 68.3
TAR629G0060 Trochodendron aralioides HOM05D006696 ORTHO05D008683 4.5e-232 808.1 591 67.7
Atru.chr5.281 Acer truncatum HOM05D006696 ORTHO05D008683 1.0e-231 807.0 645 63.9
RcHm_v2.0_Chr1g0349711 Rosa chinensis HOM05D006696 ORTHO05D008683 1.3e-231 806.6 596 67.8
Aqoxy7G00691 Aquilegia oxysepala HOM05D006696 ORTHO05D008683 2.3e-231 805.8 598 67.1
MD07G1119000 Malus domestica HOM05D006696 ORTHO05D008683 3.8e-231 805.1 623 65.3
ClCG05G002380 Citrullus lanatus HOM05D006696 ORTHO05D008683 1.9e-230 802.7 635 65.0
QL08p052869 Quercus lobata HOM05D006696 ORTHO05D008683 1.9e-230 802.7 607 67.2
Eucgr.D02468 Eucalyptus grandis HOM05D006696 ORTHO05D008683 7.3e-230 800.8 625 65.0
Solyc01g091130.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 7.3e-230 800.8 584 67.8
VMungo0331G0021 Vigna mungo HOM05D006696 ORTHO05D008683 1.2e-229 800.0 583 67.2
Haze_16792 Corylus avellana HOM05D006696 ORTHO05D008683 3.6e-229 798.5 595 66.1
Nitab4.5_0010616g0010 Nicotiana tabacum HOM05D006696 ORTHO05D008683 4.7e-229 798.1 658 62.5
Nitab4.5_0000457g0140 Nicotiana tabacum HOM05D006696 ORTHO05D008683 6.1e-229 797.7 610 65.1
vmacro21023 Vaccinium macrocarpon HOM05D006696 ORTHO05D008683 6.1e-229 797.7 709 58.5
MELO3C006203.2 Cucumis melo HOM05D006696 ORTHO05D008683 1.0e-228 797.0 633 64.3
Lj7C531T6 Lonicera japonica HOM05D006696 ORTHO05D008683 1.4e-228 796.6 603 65.2
AUR62004189 Chenopodium quinoa HOM05D006696 ORTHO05D008683 1.8e-228 796.2 584 67.3
MSTRG.20736 Avicennia marina HOM05D006696 ORTHO05D008683 3.0e-228 795.4 625 63.0
Lsat_1_v5_gn_3_132380 Lactuca sativa HOM05D006696 ORTHO05D008683 6.8e-228 794.3 627 64.1
Medtr4g025130 Medicago truncatula HOM05D006696 ORTHO05D008683 1.2e-227 793.5 589 65.9
CsaV3_3G009820 Cucumis sativus L. HOM05D006696 ORTHO05D008683 1.5e-227 793.1 597 65.8
FAN01G1519 Fragaria x ananassa HOM05D006696 ORTHO05D008683 7.5e-227 790.8 631 63.2
Prupe.2G142200 Prunus persica HOM05D006696 ORTHO05D008683 7.5e-227 790.8 587 66.4
FAN03G1153 Fragaria x ananassa HOM05D006696 ORTHO05D008683 2.9e-226 788.9 604 64.7
Migut.B01614 Erythranthe guttata HOM05D006696 ORTHO05D008683 4.9e-226 788.1 601 64.6
arahy.Tifrunner.gnm1.ann1.PBYD8I Arachis hypogaea HOM05D006696 ORTHO05D008683 1.1e-225 786.9 591 66.5
FAN06G3694 Fragaria x ananassa HOM05D006696 ORTHO05D008683 1.4e-225 786.6 631 63.1
Glyma.03G028100 Glycine max HOM05D006696 ORTHO05D008683 1.4e-225 786.6 586 67.1
FvH4_7g11430 Fragaria vesca HOM05D006696 ORTHO05D008683 1.8e-225 786.2 631 63.1
arahy.Tifrunner.gnm1.ann1.30BUB6 Arachis hypogaea HOM05D006696 ORTHO05D008683 2.4e-225 785.8 591 66.3
SGA_v2.0_scaffold95G28911 Striga asiatica HOM05D006696 ORTHO05D008683 3.2e-225 785.4 618 63.4
Ca_19926_v3 Cicer arietinum L. HOM05D006696 ORTHO05D008683 5.4e-225 784.6 591 66.3
Duzib177G0277 Durio zibethinus HOM05D006696 ORTHO05D008683 5.4e-225 784.6 574 68.1
FAN06G1977 Fragaria x ananassa HOM05D006696 ORTHO05D008683 3.5e-224 781.9 631 62.9
EL10Ac1g00866 Beta vulgaris HOM05D006696 ORTHO05D008683 4.6e-224 781.6 607 65.4
TPR.G7586 Trifolium pratense HOM05D006696 ORTHO05D008683 4.6e-224 781.6 592 65.4
HanXRQChr03g0093971 Helianthus annuus HOM05D006696 ORTHO05D008683 3.0e-223 778.9 584 65.9
Lalb_Chr07g0189961 Lupinus albus HOM05D006696 ORTHO05D008683 3.0e-223 778.9 584 67.0
MBI12_g20403_MAGBIO Magnolia biondii HOM05D006696 ORTHO05D008683 1.9e-222 776.2 590 66.1
Ah.05g174590 Amaranthus hybridus HOM05D006696 ORTHO05D008683 2.5e-222 775.8 610 64.8
Phvul.010G081400 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 2.5e-222 775.8 584 65.9
Psat7g231000 Pisum sativum HOM05D006696 ORTHO05D008683 2.5e-222 775.8 577 67.1
PSO782G1103 Papaver somniferum HOM05D006696 ORTHO05D008683 2.1e-221 772.7 582 65.3
Sed0011228 Sechium edule HOM05D006696 ORTHO05D008683 2.1e-221 772.7 631 62.4
Hund27369 Selenicereus undatus HOM05D006696 ORTHO05D008683 4.7e-221 771.5 590 65.3
PSO478G1798 Papaver somniferum HOM05D006696 ORTHO05D008683 6.8e-220 767.7 600 63.5
unitig_22.g5383 Utricularia gibba HOM05D006696 ORTHO05D008683 1.2e-219 766.9 612 62.7
Cpa.g.sc611.2 Carica papaya HOM05D006696 ORTHO05D008683 5.8e-219 764.6 566 68.0
ECA232G1408 Erigeron canadensis HOM05D006696 ORTHO05D008683 5.8e-219 764.6 592 62.3
HPP92_022287 Vanilla planifolia HOM05D006696 ORTHO05D008683 1.0e-215 753.8 633 60.2
CDE04G1815 Ceratophyllum demersum HOM05D006696 ORTHO05D008683 9.5e-214 747.3 590 62.5
Sc26g0001290 Simmondsia chinensis HOM05D006696 ORTHO05D008683 1.9e-209 733.0 611 61.7
CARHR000330 Cardamine hirsuta HOM05D006696 ORTHO05D008683 2.7e-208 729.2 516 72.9
Lj3g0014279 Lotus japonicus HOM05D006696 ORTHO05D008683 1.7e-207 726.5 541 66.7
SalBow5G3816 Salvia bowleyana HOM05D006696 ORTHO05D008683 1.7e-207 726.5 576 63.4
GSVIVG01027661001 Vitis vinifera HOM05D006696 ORTHO05D008683 2.3e-207 726.1 588 63.3
ATR0041G020 Amborella trichopoda HOM05D006696 ORTHO05D008683 1.1e-193 680.6 578 59.0
AUR62013656 Chenopodium quinoa HOM05D006696 ORTHO05D008683 3.2e-193 679.1 569 61.2
Os10g0190800 Oryza sativa ssp. japonica HOM05D006696 ORTHO05D008683 9.0e-188 661.0 583 58.3
SMO011G0006 Selaginella moellendorffii HOM05D006696 ORTHO05D008683 3.8e-178 629.0 593 53.8
Actinidia33475 Actinidia chinensis HOM05D006696 ORTHO05D008683 6.4e-178 628.2 626 53.8
Zm00001eb145800 Zea mays HOM05D006696 ORTHO05D008683 3.2e-177 625.9 620 53.5
SEGI_31859 Sequoiadendron giganteum HOM05D006696 ORTHO05D008683 4.3e-174 615.5 564 55.0
AagrBONN_evm.TU.Sc2ySwM_228.1723 Anthoceros agrestis HOM05D006696 ORTHO05D008683 4.6e-168 595.5 619 51.9
Mapoly0117s0009 Marchantia polymorpha HOM05D006696 ORTHO05D008683 6.7e-167 591.7 598 52.0
Pp3c18_8320 Physcomitrium patens HOM05D006696 ORTHO05D008683 9.7e-158 561.2 576 50.2
DCAR_015916 Daucus carota HOM05D006696 ORTHO05D008683 1.0e-138 498.0 382 62.0
Solyc01g091140.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 2.5e-121 440.3 510 49.2
Dinv32364 Davidia involucrata HOM05D006696 ORTHO05D008683 7.3e-113 412.1 254 74.8
CANSAT21G0759 Cannabis sativa HOM05D006696 ORTHO05D008683 2.7e-91 340.5 211 74.9
Oeu037929.1 Olea europaea HOM05D006696 ORTHO05D008683 1.8e-71 274.6 208 67.8
CARHR000320 Cardamine hirsuta HOM05D006696 ORTHO05D008683 5.6e-57 226.5 107 97.2
Sopen01g036900 Solanum pennellii HOM05D006696 ORTHO05D008683 4.8e-56 223.4 220 55.0
SGA_v2.0_scaffold581G53050 Striga asiatica HOM05D006696 ORTHO05D008683 9.0e-47 192.6 203 48.3
Sopen01g036890 Solanum pennellii HOM05D006696 ORTHO05D008683 1.5e-25 122.1 80 70.0
VMungo0720G2385 Vigna mungo HOM05D006696 ORTHO05D008683 9.7e-25 119.4 65 78.5
VMungo1309G0520 Vigna mungo HOM05D006696 ORTHO05D008683 2.6e-22 111.3 65 73.8
Zm00001eb027220 Zea mays HOM05D006696 ORTHO05D008683 1.7e-21 108.6 101 49.5
Atru.chr4.660 Acer truncatum HOM05D006696 ORTHO05D030753 5.0e-21 107.1 141 46.1
Phvul.010G066778 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 2.2e-16 91.7 65 69.2
Cpa.g.sc14.75 Carica papaya HOM05D006696 ORTHO05D008683 2.2e-13 81.6 37 94.6
SalBow5G1567 Salvia bowleyana HOM05D006696 ORTHO05D008683 6.5e-13 80.1 43 81.4
Atru.chr4.903 Acer truncatum HOM05D006696 ORTHO05D030753 2.0e-09 68.6 39 74.4


User provided reference genes

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