Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 2.3e-246 855.1 433 100.0
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 4.9e-241 837.4 432 97.9
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 2.8e-236 821.6 433 97.0
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 2.8e-236 821.6 433 97.0
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 4.8e-236 820.8 433 96.8
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.4e-235 819.3 433 96.5
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 4.9e-225 784.3 432 92.4
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 9.7e-221 770.0 432 89.6
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 9.7e-221 770.0 432 91.0
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 4.8e-220 767.7 432 90.5
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 2.6e-218 761.9 432 89.4
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.9e-201 705.3 434 84.3
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 6.7e-190 667.5 432 79.6
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 3.4e-181 638.6 419 75.2
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 4.4e-181 638.3 402 76.9
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 7.5e-181 637.5 432 73.1
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 9.8e-181 637.1 434 73.7
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 9.8e-181 637.1 433 71.8
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.7e-180 636.3 429 73.9
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 2.2e-180 636.0 406 76.6
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 4.8e-180 634.8 419 75.7
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.1e-179 633.6 400 77.0
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 1.1e-179 633.6 398 77.4
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 1.4e-179 633.3 429 73.7
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.4e-179 632.5 433 72.3
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 1.2e-178 630.2 400 77.2
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.6e-178 629.8 400 77.0
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 2.7e-178 629.0 430 73.7
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 3.5e-178 628.6 400 76.2
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 4.5e-178 628.2 417 74.8
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 4.5e-178 628.2 417 74.3
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.3e-177 626.7 400 76.8
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 2.9e-177 625.5 419 74.0
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 6.6e-177 624.4 428 72.2
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 1.5e-176 623.2 424 71.9
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.9e-176 622.9 400 76.2
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.5e-176 622.5 400 75.8
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.3e-176 622.1 400 75.2
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 5.5e-176 621.3 426 72.5
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 5.5e-176 621.3 459 68.8
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 1.6e-175 619.8 417 73.4
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.6e-175 619.8 426 72.3
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 2.1e-175 619.4 399 75.9
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.0e-174 617.1 433 70.0
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.0e-174 617.1 432 71.5
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 6.8e-174 614.4 400 75.0
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 8.9e-174 614.0 433 70.4
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.2e-173 613.6 411 73.7
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 3.4e-173 612.1 400 73.2
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 9.8e-173 610.5 421 69.8
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 9.8e-173 610.5 419 70.9
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 1.7e-172 609.8 403 73.9
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 1.7e-172 609.8 400 74.2
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 1.7e-172 609.8 422 71.3
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 3.7e-172 608.6 403 72.7
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 6.3e-172 607.8 400 73.8
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 6.3e-172 607.8 401 74.3
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.1e-171 607.1 400 74.0
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.4e-171 606.7 407 74.0
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 5.4e-171 604.7 418 72.2
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 4.5e-170 601.7 405 72.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.7e-169 599.7 433 70.2
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 2.3e-169 599.4 433 71.1
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 2.3e-169 599.4 402 72.6
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 1.9e-168 596.3 398 72.9
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.5e-168 595.9 410 72.2
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 4.3e-168 595.1 392 74.2
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 4.3e-168 595.1 410 72.0
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 7.3e-168 594.3 398 72.1
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 7.3e-168 594.3 409 72.1
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.6e-167 593.2 413 70.5
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.6e-167 593.2 398 72.4
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 2.1e-167 592.8 398 72.4
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 2.8e-167 592.4 422 69.4
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 5.2e-166 588.2 475 63.8
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 4.4e-165 585.1 400 71.0
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 9.8e-165 583.9 415 70.4
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 8.3e-164 580.9 404 70.5
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 2.0e-162 576.2 415 68.4
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 3.5e-162 575.5 400 69.8
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.5e-160 570.1 395 71.1
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.6e-159 566.6 359 78.0
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.1e-159 566.2 404 68.3
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.4e-158 563.5 359 77.2
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 5.8e-157 558.1 382 73.3
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 8.3e-156 554.3 374 73.5
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.9e-155 553.1 387 67.7
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.1e-152 543.9 562 53.7
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.1e-151 539.7 413 66.1
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 2.8e-151 539.3 413 63.0
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 3.4e-149 532.3 390 68.5
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 6.4e-148 528.1 455 61.5
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 1.0e-145 520.8 378 69.0
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 5.6e-144 515.0 334 73.7
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 6.2e-143 511.5 421 61.5
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.3e-140 503.8 413 62.7
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 4.9e-140 501.9 338 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 1.6e-138 496.9 381 63.5
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.7e-138 496.1 344 68.3
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 3.0e-137 492.7 386 62.4
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 9.0e-134 481.1 322 74.2
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 7.6e-133 478.0 342 69.0
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.7e-132 476.9 386 64.2
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 5.4e-123 445.3 326 69.3
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 5.4e-123 445.3 334 64.7
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.9e-121 439.1 277 81.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 2.5e-115 419.9 362 62.2
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.3e-113 414.1 369 55.0
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 2.5e-112 409.8 266 75.2
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.3e-105 387.5 263 71.1
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 8.5e-100 368.2 317 59.6
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 8.8e-97 358.2 318 59.1
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 3.7e-95 352.8 406 48.0
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 2.5e-91 340.1 382 46.6
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.6e-90 337.4 228 71.5
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 7.7e-85 318.5 399 43.6
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 1.8e-65 254.2 232 61.2
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 4.9e-63 246.1 170 65.9
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.2e-61 241.5 262 49.2
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 4.7e-58 229.6 175 68.0
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.2e-50 204.9 336 35.4
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 6.2e-50 202.6 183 58.5
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.4e-49 201.4 129 73.6
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-46 189.5 167 57.5
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 7.0e-46 189.1 122 72.1
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.2e-38 163.7 140 62.1
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 6.0e-29 132.9 108 64.8
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 5.6e-27 126.3 416 28.6
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 2.4e-25 120.9 84 66.7
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.9e-23 114.0 95 64.2
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 4.6e-21 106.7 91 59.3
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.1e-18 97.8 64 65.6
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.8e-18 97.4 72 68.1
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.8e-16 89.7 62 69.4
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 8.4e-15 85.9 68 58.8
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.9e-11 74.7 49 65.3
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 3.8e-07 60.5 40 65.0
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 4.9e-07 60.1 42 59.5
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 6.4e-07 59.7 51 56.9
C03p89650 Brassica napus HOM05D005532 ORTHO05D102395 1.9e-06 58.2 45 71.1
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 3.2e-06 57.4 45 57.8


User provided reference genes

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