Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 0.0e+00 1110.1 538 100.0
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 0.0e+00 1076.2 562 94.1
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 1.8e-311 1071.6 562 93.4
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-309 1065.8 562 93.1
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.1e-306 1055.8 562 91.3
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 3.5e-289 997.7 521 93.3
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.5e-287 992.3 562 84.3
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.5e-287 992.3 562 84.9
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 9.6e-287 989.6 562 84.5
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 2.1e-286 988.4 562 84.3
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-286 988.4 562 84.3
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 2.1e-286 988.4 562 84.3
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 2.1e-286 988.4 562 84.3
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.1e-285 986.1 562 83.8
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 6.9e-285 983.4 562 83.3
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 9.0e-285 983.0 562 83.1
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.5e-284 982.2 562 83.3
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 8.4e-283 976.5 562 82.9
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 1.4e-282 975.7 562 82.6
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 1.9e-282 975.3 562 82.9
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 1.9e-282 975.3 562 82.9
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 3.2e-282 974.5 562 82.7
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 7.1e-282 973.4 562 82.9
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 2.1e-281 971.8 562 82.6
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 1.4e-272 942.6 562 79.9
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 5.1e-272 940.6 564 80.5
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 6.9e-269 930.2 564 80.3
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.0e-268 928.7 564 80.9
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 1.3e-267 926.0 565 79.1
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 1.7e-267 925.6 562 78.8
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 3.8e-267 924.5 562 79.4
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 5.0e-267 924.1 564 79.1
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 8.5e-267 923.3 565 78.2
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 1.1e-266 922.9 561 79.9
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 1.4e-266 922.5 564 79.8
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 3.2e-266 921.4 564 79.4
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 1.2e-265 919.5 564 79.6
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 1.6e-265 919.1 564 79.1
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 2.1e-265 918.7 565 78.9
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 3.6e-265 917.9 564 79.1
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.1e-265 917.1 565 78.9
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.0e-264 916.4 564 78.9
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.0e-264 916.4 564 78.9
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.0e-264 916.4 565 78.6
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 1.8e-264 915.6 562 78.1
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 2.3e-264 915.2 564 78.5
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 3.9e-264 914.4 558 79.4
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 5.1e-264 914.1 564 78.9
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 6.7e-264 913.7 564 78.4
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 6.7e-264 913.7 565 78.9
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.1e-263 912.9 563 78.5
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.5e-263 912.5 564 78.4
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.0e-263 912.1 564 78.9
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.0e-263 912.1 564 79.3
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.6e-263 911.8 565 78.8
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 4.4e-263 911.0 564 78.4
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 5.7e-263 910.6 564 78.5
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 7.4e-263 910.2 564 77.5
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 7.4e-263 910.2 564 77.5
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 7.4e-263 910.2 564 79.1
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 7.4e-263 910.2 564 78.7
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.2e-262 908.7 564 78.2
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 3.7e-262 907.9 567 78.5
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 4.8e-262 907.5 564 78.5
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 6.3e-262 907.1 565 77.5
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 6.3e-262 907.1 565 77.5
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 6.3e-262 907.1 564 78.0
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.8e-261 905.6 564 77.3
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 2.4e-261 905.2 561 77.4
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.4e-261 905.2 564 78.7
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 3.1e-261 904.8 564 78.4
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 7.0e-261 903.7 564 78.2
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.2e-260 902.9 564 78.0
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 1.2e-260 902.9 563 77.4
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 2.0e-260 902.1 564 77.8
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 2.6e-260 901.7 564 78.2
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.6e-260 901.7 564 77.8
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 7.7e-260 900.2 565 77.7
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 7.7e-260 900.2 556 77.5
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.0e-259 899.8 562 77.4
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 2.9e-259 898.3 565 77.7
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 2.9e-259 898.3 563 76.7
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 5.5e-258 894.0 562 76.5
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 1.2e-257 892.9 564 76.2
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.2e-257 892.9 564 75.5
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 6.1e-257 890.6 551 78.9
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 6.1e-257 890.6 562 75.6
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 6.1e-257 890.6 560 76.4
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 8.0e-257 890.2 562 76.3
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 1.4e-256 889.4 561 76.3
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 1.8e-256 889.0 559 76.6
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 3.9e-256 887.9 564 77.1
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.5e-255 885.9 562 75.8
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.0e-255 885.6 562 75.4
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 2.6e-255 885.2 561 75.8
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 1.7e-254 882.5 564 75.7
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.2e-254 882.1 563 76.0
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.8e-254 881.7 564 75.4
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.8e-254 880.9 550 77.6
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.8e-254 880.9 550 77.5
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 3.1e-253 878.2 553 75.8
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.1e-253 876.7 553 75.9
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 1.6e-252 875.9 564 75.2
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 1.6e-252 875.9 564 74.8
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 1.6e-252 875.9 551 77.1
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 3.8e-251 871.3 564 75.5
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 7.2e-250 867.1 568 74.5
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 1.2e-249 866.3 551 75.1
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 4.7e-249 864.4 563 74.2
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 4.7e-249 864.4 553 74.7
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 1.0e-248 863.2 566 74.7
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.3e-248 862.1 566 74.6
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 8.8e-248 860.1 566 74.6
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 5.7e-247 857.4 561 74.7
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.3e-246 856.3 566 74.9
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 3.7e-246 854.7 562 72.1
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.1e-245 853.2 562 72.1
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 2.7e-244 848.6 562 71.7
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 7.7e-244 847.0 534 75.7
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.1e-241 839.0 564 72.0
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.1e-241 839.0 553 73.1
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 3.1e-237 825.1 564 70.6
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 9.1e-237 823.5 559 70.5
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 4.5e-236 821.2 554 70.8
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.7e-235 819.3 554 70.2
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 2.9e-235 818.5 562 70.3
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 6.6e-235 817.4 564 72.5
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 4.0e-232 808.1 565 67.6
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 5.7e-231 804.3 553 70.2
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.8e-229 799.3 570 67.0
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 7.0e-229 797.3 562 68.1
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 7.8e-228 793.9 561 67.9
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 2.8e-225 785.4 562 67.8
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.4e-221 773.1 561 66.5
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 4.3e-218 761.5 562 66.2
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 3.4e-215 751.9 565 65.1
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 8.3e-214 747.3 558 68.5
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.4e-213 746.5 565 65.1
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.3e-208 729.2 466 73.4
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 5.2e-200 701.4 538 66.0
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 5.4e-197 691.4 537 64.4
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 1.1e-192 677.2 425 79.1
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.2e-181 638.6 425 72.9
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.0e-158 564.3 373 72.1
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.2e-157 559.3 330 78.8
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.3e-154 549.3 545 50.3
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 1.0e-147 527.7 293 82.6
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.3e-142 510.8 526 47.3
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 3.6e-140 502.7 488 49.2
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.3e-138 496.1 396 65.4
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.3e-129 467.6 526 49.2
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.4e-128 464.2 538 48.7
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.6e-124 450.7 418 53.6
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 6.1e-116 422.2 522 49.2
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 5.2e-115 419.1 442 53.6
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.9e-113 413.3 315 65.7
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.1e-99 368.2 214 84.6
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 9.3e-80 302.0 154 92.2
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 1.0e-78 298.5 154 90.9
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 3.5e-71 273.5 486 34.6
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 2.9e-65 253.8 164 72.6
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.2e-49 201.1 117 82.1
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.8e-46 191.4 133 72.9
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 1.4e-43 181.8 128 72.7
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 2.6e-42 177.6 117 69.2
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 2.6e-34 151.0 186 47.8
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 5.1e-30 136.7 136 58.1
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.1e-29 135.6 136 58.1
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 2.0e-29 134.8 136 58.1
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 2.6e-29 134.4 87 69.0
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 3.3e-29 134.0 136 58.1
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.7e-28 131.7 157 52.2
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 9.1e-27 125.9 90 63.3
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 5.9e-26 123.2 314 28.0
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.1e-24 119.0 59 86.4
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 1.1e-24 119.0 76 67.1
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 1.0e-22 112.5 85 60.0
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 5.2e-22 110.2 490 22.4
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 3.4e-13 80.9 46 73.9
C03p50690 Brassica napus HOM05D003778 ORTHO05D004418 1.6e-07 62.0 32 87.5
BolC3t17356H Brassica oleracea HOM05D003778 ORTHO05D004418 1.6e-07 62.0 32 87.5
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 3.6e-07 60.8 136 35.3
C03p50670 Brassica napus HOM05D003778 ORTHO05D004418 6.1e-07 60.1 32 84.4
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 5.2e-06 57.0 40 75.0


User provided reference genes

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