Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 2127.1 1068 100.0
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 2120.5 1074 99.4
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 2095.9 1073 98.4
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 2094.7 1073 98.4
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 2076.2 1069 98.0
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 2019.6 1076 95.3
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1955.6 1082 90.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1916.4 1078 90.3
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1913.3 1079 89.2
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1904.8 1077 88.8
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1898.2 1078 89.2
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1840.9 1082 85.1
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1830.8 1078 85.2
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1830.5 1082 84.6
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1823.5 1082 84.3
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1820.8 1081 84.7
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1807.3 1082 84.0
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1802.3 1078 84.1
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1799.6 1072 83.8
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1798.5 1078 84.0
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1796.9 1078 83.4
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1795.8 1093 82.8
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1793.9 1078 83.7
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1793.5 1078 83.7
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1789.6 1076 83.4
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1788.9 1078 83.8
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1783.1 1084 82.6
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1778.1 1080 83.1
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1769.6 1088 82.4
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1767.7 1092 81.7
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1751.5 1142 78.4
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1692.9 1080 78.3
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1673.3 1079 76.7
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1672.5 1085 77.4
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1672.1 1085 77.4
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1666.4 1084 77.2
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1664.8 1085 77.1
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1654.0 1085 76.4
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1080 76.8
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1075 77.4
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1650.6 1026 79.6
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1649.8 1083 76.9
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1648.6 1079 76.5
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1645.6 1082 76.7
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1080 76.3
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1640.9 1083 76.5
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1640.2 1016 78.9
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1639.8 1085 74.7
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1047 78.0
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1637.1 1084 75.6
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1637.1 1084 76.1
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1636.7 1065 76.5
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1636.3 1083 76.5
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1635.5 1061 76.7
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1631.7 1081 75.0
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1630.9 1124 74.2
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1630.2 1095 74.5
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1629.8 999 79.8
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1629.4 1091 75.0
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1628.6 1076 75.9
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1622.4 1076 76.2
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1081 75.0
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1619.4 1074 74.5
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1617.8 997 78.8
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1613.6 1001 77.8
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1613.2 981 79.5
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1611.3 1082 75.0
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1609.0 1073 74.3
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1605.1 1170 70.9
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1604.7 1043 75.9
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1604.3 987 79.1
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1604.0 1084 75.0
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1603.2 1067 74.8
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1602.4 1038 76.7
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1594.3 1088 73.2
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1591.2 1017 76.5
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1590.9 1084 74.2
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1589.7 982 78.1
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1588.5 1078 73.5
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1587.8 1080 72.7
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1587.0 1073 74.0
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1586.6 1079 73.5
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1583.2 982 77.2
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1582.8 1068 73.7
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1578.5 982 77.6
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1064 73.4
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1576.2 1067 73.0
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1574.3 991 77.1
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1573.9 1077 72.8
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1572.8 1099 72.8
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1572.4 1077 72.8
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1571.6 1062 74.6
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1571.6 1077 72.7
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1562.4 1003 75.5
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1559.7 1056 72.6
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1555.8 1073 72.8
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1552.7 1077 72.3
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1546.9 1084 71.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1527.3 1034 72.8
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1522.7 1068 71.7
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1522.7 1077 71.4
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1505.7 1112 69.4
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1500.7 1178 65.2
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1496.5 1150 67.0
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1484.2 1055 70.3
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1456.0 1113 68.5
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1454.9 969 73.2
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1444.9 914 76.6
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1430.2 1075 68.8
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1420.6 869 79.2
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1405.2 1017 67.3
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1394.0 998 69.8
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1367.8 1026 65.1
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1333.2 957 67.2
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1300.8 722 90.4
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1296.6 1102 63.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1295.8 1102 63.3
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1281.2 801 77.8
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1247.6 999 62.7
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1167.9 1076 57.8
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1145.6 846 68.9
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1119.8 1031 54.4
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1117.1 748 73.9
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1106.7 745 75.7
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1104.7 1059 53.3
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1090.1 983 55.8
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.7e-287 993.0 739 66.8
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 4.4e-275 951.8 880 56.2
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 5.8e-259 898.3 872 55.5
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.4e-258 894.8 774 57.6
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 9.3e-257 891.0 579 74.3
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.6e-251 872.8 596 73.0
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 6.4e-242 841.6 967 45.0
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 5.9e-211 738.8 671 55.9
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.1e-196 689.9 642 56.9
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.7e-192 676.8 704 51.4
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.7e-184 649.4 362 84.0
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.9e-170 603.2 415 72.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.5e-169 600.5 532 60.0
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 2.7e-163 580.5 419 71.6
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.6e-160 570.1 498 63.7
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 4.6e-155 553.1 338 81.4
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 4.6e-155 553.1 1040 36.0
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.3e-146 525.0 456 63.2
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.3e-146 525.0 393 63.6
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 1.9e-132 478.0 397 61.5
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 6.0e-123 446.4 309 69.9
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.3e-120 438.7 324 66.0
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 8.7e-114 416.0 403 57.8
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 3.3e-105 387.5 1000 28.8
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.7e-104 385.2 947 29.0
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 2.8e-104 384.4 967 30.0
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.5e-100 371.3 227 79.3
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 5.3e-95 353.6 277 69.3
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 9.4e-92 342.8 909 29.9
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.0e-77 296.2 154 88.3
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.3e-56 226.1 222 53.2
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 2.0e-54 218.8 865 23.2
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 3.6e-51 208.0 335 34.6
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 6.8e-50 203.8 310 42.3
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.2e-43 183.0 220 51.4
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 2.8e-43 181.8 124 73.4
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.7e-40 172.6 152 57.2
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 3.2e-39 168.3 142 59.9
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 6.6e-37 160.6 273 37.4
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 6.6e-37 160.6 154 55.8
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 4.3e-36 157.9 149 55.0
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 3.1e-34 151.8 462 25.3
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 8.4e-32 143.7 125 60.8
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 7.1e-31 140.6 181 40.9
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 6.9e-26 124.0 111 55.9
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.0e-25 122.5 430 24.7
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-20 106.3 80 66.2
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 4.0e-18 98.2 151 49.0
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.2e-15 88.6 83 56.6
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.6e-12 77.8 54 63.0
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.1e-11 75.9 138 39.1
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.1e-10 73.6 51 66.7
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 6.4e-08 64.3 73 50.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.9e-07 62.8 45 64.4
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 4.2e-07 61.6 36 72.2
A02p03970 Brassica napus HOM05D018909 ORTHO05D016798 5.5e-07 61.2 52 71.2
A05p09840 Brassica napus HOM05D018909 ORTHO05D016798 5.5e-07 61.2 52 71.2
A03p60340 Brassica napus HOM05D037741 ORTHO05D016798 1.6e-06 59.7 52 71.2


User provided reference genes

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