Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43161 Brassica carinata HOM05D018986 ORTHO05D015938 5.2e-123 444.5 240 100.0
C06p04480 Brassica napus HOM05D003465 ORTHO05D004034 1.3e-121 439.9 241 99.6
BolC6t35578H Brassica oleracea HOM05D003465 ORTHO05D004034 1.3e-121 439.9 241 99.6
BraA06t23577Z Brassica rapa HOM05D003465 ORTHO05D004034 1.2e-114 416.8 242 95.9
A06p03720 Brassica napus HOM05D003465 ORTHO05D004034 2.2e-113 412.5 242 95.0
BcaB07g33650 Brassica carinata HOM05D011306 ORTHO05D015938 1.2e-47 194.1 128 75.8
Sp1g36230 Schrenkiella parvula HOM05D011306 ORTHO05D015938 3.1e-43 179.5 203 52.7
Thhalv10012313m.g Eutrema salsugineum HOM05D011306 ORTHO05D015938 7.1e-40 168.3 247 45.3
Sp1g36590 Schrenkiella parvula HOM05D018986 ORTHO05D015938 8.2e-36 154.8 194 47.9
AT1G49700 Arabidopsis thaliana HOM05D018986 ORTHO05D015938 2.2e-25 120.2 174 41.4
AL1G57110 Arabidopsis lyrata HOM05D018986 ORTHO05D015938 3.6e-23 112.8 206 40.8
Carub.0001s3891 Capsella rubella HOM05D018986 ORTHO05D015938 3.9e-14 82.8 271 29.2
CARHR136410 Cardamine hirsuta HOM05D011306 ORTHO05D012973 3.4e-10 69.7 71 42.3
Thhalv10016826m.g Eutrema salsugineum HOM05D011306 ORTHO05D012973 3.4e-10 69.7 247 28.3
Mapoly0042s0066 Marchantia polymorpha HOM05D001318 ORTHO05D001152 5.9e-10 68.9 88 40.9
AT2G29605 Arabidopsis thaliana HOM05D019997 ORTHO05D012973 7.7e-10 68.6 72 44.4
Pp3c10_2410 Physcomitrium patens HOM05D001318 ORTHO05D001152 1.0e-09 68.2 69 46.4
Pp3c14_2570 Physcomitrium patens HOM05D001318 ORTHO05D001152 1.0e-09 68.2 69 46.4
Pp3c14_2574 Physcomitrium patens HOM05D001318 ORTHO05D001152 1.0e-09 68.2 69 46.4
SpUn0131_0020 Schrenkiella parvula HOM05D011306 ORTHO05D012973 2.9e-09 66.6 76 39.5
AL4G39300 Arabidopsis lyrata HOM05D019997 ORTHO05D012973 5.0e-09 65.9 72 38.9
SEGI_03112 Sequoiadendron giganteum HOM05D001318 ORTHO05D001152 1.4e-08 64.3 78 41.0
AT2G11623 Arabidopsis thaliana HOM05D011306 ORTHO05D015938 1.9e-08 63.9 53 49.1
AagrBONN_evm.TU.Sc2ySwM_228.899 Anthoceros agrestis HOM05D001318 ORTHO05D001152 4.2e-08 62.8 67 43.3
SMO118G0106 Selaginella moellendorffii HOM05D001318 ORTHO05D001152 9.4e-08 61.6 69 43.5
GSVIVG01033609001 Vitis vinifera HOM05D001318 ORTHO05D001152 1.6e-07 60.8 87 36.8
CAN.G641.51 Capsicum annuum HOM05D001318 ORTHO05D001152 2.1e-07 60.5 84 35.7
Migut.N00562 Erythranthe guttata HOM05D001318 ORTHO05D001152 2.7e-07 60.1 77 40.3
THA.LOC104823210 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 3.6e-07 59.7 77 41.6
CBR_g53663 Chara braunii HOM05D001318 ORTHO05D001152 4.7e-07 59.3 72 41.7
CANSAT64G1516 Cannabis sativa HOM05D001318 ORTHO05D001152 6.1e-07 58.9 77 39.0
BcaB08g35341 Brassica carinata HOM05D011306 ORTHO05D012973 1.0e-06 58.2 76 34.2
SGA_v2.0_scaffold3G01732 Striga asiatica HOM05D001318 ORTHO05D001152 1.0e-06 58.2 66 39.4
Medtr7g090270 Medicago truncatula HOM05D001318 ORTHO05D001152 1.4e-06 57.8 63 39.7
Gohir.A02G112715 Gossypium hirsutum HOM05D001318 ORTHO05D001152 1.8e-06 57.4 83 36.1
THA.LOC104826888 Tarenaya hassleriana HOM05D001318 ORTHO05D001152 1.8e-06 57.4 74 39.2
A01p41960 Brassica napus HOM05D001318 ORTHO05D001152 2.3e-06 57.0 77 39.0
CBR_g52240 Chara braunii HOM05D001318 ORTHO05D001152 2.3e-06 57.0 72 40.3
Duzib106G0060 Durio zibethinus HOM05D001318 ORTHO05D001152 2.3e-06 57.0 54 46.3
FAN02G2982 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.3e-06 57.0 74 37.8
FAN05G0449 Fragaria x ananassa HOM05D001318 ORTHO05D001152 2.3e-06 57.0 75 36.0
Gohir.A11G308000 Gossypium hirsutum HOM05D001318 ORTHO05D001152 2.3e-06 57.0 84 33.3
Nn7g36658 Nelumbo nucifera HOM05D001318 ORTHO05D001152 2.3e-06 57.0 87 34.5
TWI74G0127 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 2.3e-06 57.0 67 41.8
AT4G07675 Arabidopsis thaliana HOM05D018986 ORTHO05D015938 3.0e-06 56.6 145 33.8
Cpa.g.sc5.211 Carica papaya HOM05D001318 ORTHO05D001152 3.0e-06 56.6 66 40.9
Cc01_g00850 Coffea canephora HOM05D001318 ORTHO05D001152 3.0e-06 56.6 87 34.5
DCAR_020552 Daucus carota HOM05D001318 ORTHO05D001152 3.0e-06 56.6 87 33.3
FvH4_6g25280 Fragaria vesca HOM05D001318 ORTHO05D001152 3.0e-06 56.6 74 36.5
RcHm_v2.0_Chr2g0125341 Rosa chinensis HOM05D001318 ORTHO05D001152 3.0e-06 56.6 74 36.5
SGA_v2.0_scaffold6G03296 Striga asiatica HOM05D001318 ORTHO05D001152 3.0e-06 56.6 77 39.0
Ah.13g076940 Amaranthus hybridus HOM05D001318 ORTHO05D001152 3.9e-06 56.2 87 34.5
A07p25680 Brassica napus HOM05D001318 ORTHO05D001152 3.9e-06 56.2 63 39.7
BraA07t30208Z Brassica rapa HOM05D001318 ORTHO05D001152 3.9e-06 56.2 63 39.7
Gorai.003G088900 Gossypium raimondii HOM05D001318 ORTHO05D001152 3.9e-06 56.2 83 36.1
Gorai.007G353400 Gossypium raimondii HOM05D001318 ORTHO05D001152 3.9e-06 56.2 84 33.3
BcaC08g45151 Brassica carinata HOM05D001318 ORTHO05D001152 5.2e-06 55.8 72 36.1
BolC6t37940H Brassica oleracea HOM05D001318 ORTHO05D001152 5.2e-06 55.8 72 36.1
CiPaw.09G046200 Carya illinoinensis HOM05D001318 ORTHO05D001152 5.2e-06 55.8 75 34.7
Gohir.D11G323400 Gossypium hirsutum HOM05D001318 ORTHO05D001152 5.2e-06 55.8 84 33.3
MD00G1088600 Malus domestica HOM05D001318 ORTHO05D001152 5.2e-06 55.8 75 33.3
Potri.016G038100 Populus trichocarpa HOM05D001318 ORTHO05D001152 5.2e-06 55.8 88 36.4
PGR031G3066 Punica granatum HOM05D001318 ORTHO05D001152 5.2e-06 55.8 87 34.5
Carub.0003s0942 Capsella rubella HOM05D001318 ORTHO05D001152 6.7e-06 55.5 77 39.0
Gohir.D03G071100 Gossypium hirsutum HOM05D001318 ORTHO05D001152 6.7e-06 55.5 83 36.1
BraA01t04263Z Brassica rapa HOM05D001318 ORTHO05D001152 8.8e-06 55.1 77 37.7
Ciclev10021153m.g Citrus clementina HOM05D001318 ORTHO05D001152 8.8e-06 55.1 74 35.1
COL.COLO4_05694 Corchorus olitorius HOM05D001318 ORTHO05D001152 8.8e-06 55.1 83 36.1
Duzib128G1139 Durio zibethinus HOM05D001318 ORTHO05D001152 8.8e-06 55.1 75 34.7
MD12G1093600 Malus domestica HOM05D001318 ORTHO05D001152 8.8e-06 55.1 87 33.3
QL07p008869 Quercus lobata HOM05D001318 ORTHO05D001152 8.8e-06 55.1 87 34.5
SalBow3G0733 Salvia bowleyana HOM05D001318 ORTHO05D001152 8.8e-06 55.1 76 38.2
TWI77G0987 Tripterygium wilfordii HOM05D001318 ORTHO05D001152 8.8e-06 55.1 67 40.3


User provided reference genes

Program Settings