Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 6.6e-47 190.3 90 100.0
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 1.7e-31 139.0 111 65.8
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 8.6e-31 136.7 111 64.9
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 2.5e-30 135.2 111 64.0
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 7.3e-30 133.7 111 63.1
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 9.5e-30 133.3 111 64.0
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 9.5e-30 133.3 111 64.0
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 8.1e-29 130.2 111 64.9
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 8.1e-29 130.2 111 64.9
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 8.1e-29 130.2 114 61.4
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 3.1e-28 128.3 110 60.0
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 2.6e-27 125.2 109 58.7
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.3e-26 122.9 110 60.0
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 1.3e-23 112.8 110 57.3
BraA09t39474Z Brassica rapa HOM05D000085 ORTHO05D000274 1.1e-22 109.8 91 65.9
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 2.1e-21 105.5 111 55.9
BcaC05g26644 Brassica carinata HOM05D007408 ORTHO05D009325 1.8e-20 102.4 52 90.4
BolC5t31202H Brassica oleracea HOM05D000085 ORTHO05D000274 1.2e-16 89.7 53 79.2
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 5.6e-14 80.9 112 42.0
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 9.6e-14 80.1 106 42.5
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 9.6e-14 80.1 117 41.0
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 3.6e-13 78.2 109 44.0
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 3.6e-13 78.2 107 42.1
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 6.2e-13 77.4 112 42.0
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 6.2e-13 77.4 112 42.0
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 8.1e-13 77.0 116 39.7
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 8.1e-13 77.0 112 41.1
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 1.8e-12 75.9 103 44.7
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 1.8e-12 75.9 103 44.7
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 2.4e-12 75.5 103 44.7
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 6.9e-12 73.9 112 40.2
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 6.9e-12 73.9 112 40.2
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 7.6e-11 70.5 121 35.5
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 2.2e-10 68.9 112 36.6
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 6.4e-10 67.4 117 38.5
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 6.4e-10 67.4 117 38.5
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 6.4e-10 67.4 117 38.5
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.4e-09 66.2 114 32.5
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 1.4e-09 66.2 117 37.6
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 1.4e-09 66.2 117 37.6
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 1.4e-09 66.2 98 40.8
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 1.4e-09 66.2 116 33.6
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 1.9e-09 65.9 113 36.3
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 1.9e-09 65.9 118 35.6
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.4e-09 65.5 113 36.3
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.4e-09 65.5 113 36.3
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 2.4e-09 65.5 113 36.3
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 3.2e-09 65.1 116 36.2
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 9.3e-09 63.5 112 36.6
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 1.2e-08 63.2 117 36.8
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 1.6e-08 62.8 118 33.9
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 1.6e-08 62.8 113 32.7
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 2.1e-08 62.4 113 33.6
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 3.5e-08 61.6 117 36.8
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 4.6e-08 61.2 113 35.4
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 6.0e-08 60.8 120 33.3
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 7.8e-08 60.5 115 33.9
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 7.8e-08 60.5 115 33.9
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 7.8e-08 60.5 115 33.9
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 7.8e-08 60.5 121 33.1
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 7.8e-08 60.5 121 31.4
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 7.8e-08 60.5 125 33.6
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.0e-07 60.1 113 36.3
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.0e-07 60.1 112 34.8
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 1.3e-07 59.7 115 33.9
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 1.3e-07 59.7 94 41.5
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 1.3e-07 59.7 125 30.4
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 1.3e-07 59.7 110 33.6
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 1.3e-07 59.7 119 31.9
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 2.3e-07 58.9 115 33.0
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 2.3e-07 58.9 114 32.5
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 3.0e-07 58.5 121 30.6
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 3.0e-07 58.5 120 31.7
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 3.0e-07 58.5 115 32.2
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 3.0e-07 58.5 113 35.4
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 5.1e-07 57.8 116 32.8
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 8.7e-07 57.0 115 31.3
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 1.1e-06 56.6 120 32.5
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 1.5e-06 56.2 117 32.5
Thhalv10019756m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 3.3e-06 55.1 33 66.7
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 3.3e-06 55.1 112 32.1
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 4.3e-06 54.7 111 31.5
HPP92_003114 Vanilla planifolia HOM05D007408 ORTHO05D009325 4.3e-06 54.7 90 37.8


User provided reference genes

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