Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43136 Brassica carinata HOM05D000135 ORTHO05D011359 5.0e-51 204.5 134 100.0
C06p04130 Brassica napus HOM05D000135 ORTHO05D011359 5.0e-51 204.5 134 100.0
A06p03870 Brassica napus HOM05D000135 ORTHO05D011359 5.5e-50 201.1 134 78.4
BraA06t23595Z Brassica rapa HOM05D000135 ORTHO05D011359 5.5e-50 201.1 134 78.4
BolC6t35541H Brassica oleracea HOM05D000135 ORTHO05D011359 2.7e-49 198.7 134 97.8
BcaB07g33677 Brassica carinata HOM05D000135 ORTHO05D011359 1.6e-44 183.0 133 80.5
Sp1g33430 Schrenkiella parvula HOM05D000135 ORTHO05D011359 2.8e-33 145.6 131 68.7
Thhalv10012139m.g Eutrema salsugineum HOM05D000135 ORTHO05D011359 3.1e-32 142.1 109 79.8
Carub.0003s0255 Capsella rubella HOM05D000135 ORTHO05D011359 6.4e-30 134.4 130 53.1
BraA05t20974Z Brassica rapa HOM05D000135 ORTHO05D011359 1.1e-29 133.7 133 75.2
BcaB02g11072 Brassica carinata HOM05D000135 ORTHO05D011359 7.0e-29 131.0 131 73.3
Thhalv10022182m.g Eutrema salsugineum HOM05D000135 ORTHO05D011359 7.0e-29 131.0 131 61.1
AT3G03410 Arabidopsis thaliana HOM05D000135 ORTHO05D011359 5.0e-27 124.8 130 50.0
AL3G13080 Arabidopsis lyrata HOM05D000227 ORTHO05D011359 1.1e-26 123.6 130 47.7
A05p20660 Brassica napus HOM05D000135 ORTHO05D011359 4.0e-24 115.2 131 67.9
BcaC05g27517 Brassica carinata HOM05D000135 ORTHO05D011359 3.5e-20 102.1 132 66.7
C06p04190 Brassica napus HOM05D000135 ORTHO05D011359 1.0e-19 100.5 51 98.0
Carub.0004s1794 Capsella rubella HOM05D000135 ORTHO05D000203 3.6e-17 92.0 120 43.3
AL4G32280 Arabidopsis lyrata HOM05D000135 ORTHO05D011359 6.8e-16 87.8 121 52.1
AL6G28550 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 6.8e-16 87.8 121 49.6
Carub.0006s1570 Capsella rubella HOM05D000135 ORTHO05D011359 6.8e-16 87.8 121 48.8
Sp3g02400 Schrenkiella parvula HOM05D000135 ORTHO05D000203 6.8e-16 87.8 121 39.7
AL3G13072 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 8.9e-16 87.4 121 40.5
CARHR195730 Cardamine hirsuta HOM05D000135 ORTHO05D000203 1.5e-15 86.7 121 39.7
Sp3g02410 Schrenkiella parvula HOM05D000227 ORTHO05D011359 1.5e-15 86.7 109 49.5
Thhalv10022417m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 4.4e-15 85.1 121 39.7
C05p63420 Brassica napus HOM05D000227 ORTHO05D011359 5.8e-15 84.7 132 42.4
AT5G17470 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 9.9e-15 84.0 121 43.0
BcaC05g30277 Brassica carinata HOM05D000135 ORTHO05D011359 9.9e-15 84.0 134 32.8
Carub.0004s0480 Capsella rubella HOM05D000135 ORTHO05D000203 9.9e-15 84.0 121 39.7
AT3G03400 Arabidopsis thaliana HOM05D000135 ORTHO05D011359 1.3e-14 83.6 121 38.0
BcaC05g30534 Brassica carinata HOM05D000135 ORTHO05D011359 1.7e-14 83.2 132 33.3
C05p34910 Brassica napus HOM05D000135 ORTHO05D011359 1.7e-14 83.2 67 62.7
BolC5t32216H Brassica oleracea HOM05D000135 ORTHO05D011359 1.1e-13 80.5 67 61.2
CARHR077430 Cardamine hirsuta HOM05D000135 ORTHO05D011359 1.1e-13 80.5 102 50.0
BcaC05g30276 Brassica carinata HOM05D000135 ORTHO05D011359 1.9e-13 79.7 132 42.4
CARHR077420 Cardamine hirsuta HOM05D000135 ORTHO05D000203 3.2e-13 79.0 121 37.2
CARHR058370 Cardamine hirsuta HOM05D000135 ORTHO05D000203 5.4e-13 78.2 123 37.4
AT2G36180 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 9.2e-13 77.4 118 39.0
A03p01440 Brassica napus HOM05D000135 ORTHO05D000203 7.8e-12 74.3 119 37.0
BcaB01g05778 Brassica carinata HOM05D000135 ORTHO05D000203 1.3e-11 73.6 120 36.7
C03p01770 Brassica napus HOM05D000135 ORTHO05D000203 1.3e-11 73.6 120 36.7
BolC3t12732H Brassica oleracea HOM05D000135 ORTHO05D000203 1.3e-11 73.6 120 36.7
AL7G46640 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 2.3e-11 72.8 114 36.0
BcaB01g05781 Brassica carinata HOM05D000135 ORTHO05D000203 3.0e-11 72.4 116 37.1
BraA03t09523Z Brassica rapa HOM05D000135 ORTHO05D000203 3.9e-11 72.0 121 35.5
CARHR215040 Cardamine hirsuta HOM05D000135 ORTHO05D000203 6.6e-11 71.2 120 34.2
Carub.0007s3293 Capsella rubella HOM05D000135 ORTHO05D000203 1.5e-10 70.1 123 31.7
BcaC09g47744 Brassica carinata HOM05D000135 ORTHO05D011359 3.3e-10 68.9 64 46.9
BNapus_Darmor_BZH_scaffold_162p00140 Brassica napus HOM05D000135 ORTHO05D011359 3.3e-10 68.9 64 46.9
BolC1t05833H Brassica oleracea HOM05D000135 ORTHO05D011359 3.3e-10 68.9 64 46.9
BcaB03g15271 Brassica carinata HOM05D000135 ORTHO05D000203 5.6e-10 68.2 107 35.5
BraA03t12154Z Brassica rapa HOM05D017453 ORTHO05D018582 5.6e-10 68.2 58 50.0
Aa31LG9G17390 Aethionema arabicum HOM05D000135 ORTHO05D000203 1.6e-09 66.6 131 31.3
SGA_v2.0_scaffold5G02968 Striga asiatica HOM05D000135 ORTHO05D000203 1.6e-09 66.6 120 30.0
AT5G37770 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 2.1e-09 66.2 106 36.8
Oeu046172.1 Olea europaea HOM05D000135 ORTHO05D000203 2.8e-09 65.9 117 32.5
THA.LOC104822372 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 3.6e-09 65.5 126 33.3
DCAR_010200 Daucus carota HOM05D000135 ORTHO05D000203 1.1e-08 63.9 115 33.0
THA.LOC104805610 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 1.1e-08 63.9 129 31.8
Sc10g0000740 Simmondsia chinensis HOM05D000135 ORTHO05D000203 1.4e-08 63.5 118 30.5
AUR62023178 Chenopodium quinoa HOM05D000135 ORTHO05D000203 2.4e-08 62.8 114 33.3
Ca_24776_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 2.4e-08 62.8 114 43.0
ECA232G2608 Erigeron canadensis HOM05D000135 ORTHO05D000203 3.1e-08 62.4 122 30.3
Peaxi162Scf00683g00043 Petunia axillaris HOM05D000135 ORTHO05D000203 4.0e-08 62.0 118 30.5
CAN.G1067.4 Capsicum annuum HOM05D000135 ORTHO05D000203 8.9e-08 60.8 115 31.3
PGSC0003DMG400010410 Solanum tuberosum HOM05D000135 ORTHO05D000203 8.9e-08 60.8 114 30.7
Glyma.11G056500 Glycine max HOM05D000135 ORTHO05D000203 1.2e-07 60.5 61 47.5
Lj9P420T29 Lonicera japonica HOM05D000135 ORTHO05D000203 1.2e-07 60.5 117 30.8
HanXRQChr09g0262211 Helianthus annuus HOM05D000135 ORTHO05D000203 1.5e-07 60.1 119 26.9
Lsat_1_v5_gn_4_156941 Lactuca sativa HOM05D000135 ORTHO05D000203 1.5e-07 60.1 122 30.3
Sed0001375 Sechium edule HOM05D000135 ORTHO05D000203 1.5e-07 60.1 115 31.3
TWI53G1610 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 1.5e-07 60.1 114 32.5
TWI77G0496 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 1.5e-07 60.1 120 33.3
VMungo1215G0656 Vigna mungo HOM05D000135 ORTHO05D000203 1.5e-07 60.1 69 46.4
Thhalv10019556m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 2.6e-07 59.3 104 39.4
Phvul.002G019300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 2.6e-07 59.3 61 47.5
CSS0018159 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 3.4e-07 58.9 125 30.4
CDE11G0709 Ceratophyllum demersum HOM05D000135 ORTHO05D000203 3.4e-07 58.9 116 30.2
Gohir.A11G161000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 3.4e-07 58.9 120 28.3
Gorai.007G178400 Gossypium raimondii HOM05D000135 ORTHO05D000203 3.4e-07 58.9 120 28.3
MBI19_g13914_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 3.4e-07 58.9 112 30.4
Gohir.D11G167300 Gossypium hirsutum HOM05D000135 ORTHO05D000203 4.4e-07 58.5 120 28.3
CSS0029226 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 5.8e-07 58.2 116 30.2
Cfa004010 Carpinus fangiana HOM05D000135 ORTHO05D000203 5.8e-07 58.2 59 45.8
Haze_15414 Corylus avellana HOM05D000135 ORTHO05D000203 5.8e-07 58.2 59 45.8
CsaV3_2G016890 Cucumis sativus L. HOM05D000135 ORTHO05D000203 7.6e-07 57.8 58 55.2
HanXRQChr01g0013261 Helianthus annuus HOM05D000135 ORTHO05D000203 7.6e-07 57.8 117 29.9
Lalb_Chr10g0095751 Lupinus albus HOM05D000135 ORTHO05D000203 7.6e-07 57.8 116 30.2
SEGI_18095 Sequoiadendron giganteum HOM05D000135 ORTHO05D000203 7.6e-07 57.8 116 31.9
Hma1.2p1_0283F.1_g113440 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 9.9e-07 57.4 115 28.7
Hma1.2p1_0669F.1_g200160 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 9.9e-07 57.4 120 27.5
Lj2g0000548 Lotus japonicus HOM05D000135 ORTHO05D000203 9.9e-07 57.4 61 45.9
Pp3c5_10970 Physcomitrium patens HOM05D000135 ORTHO05D000203 9.9e-07 57.4 120 30.8
Lsat_1_v5_gn_2_84220 Lactuca sativa HOM05D000135 ORTHO05D000203 1.3e-06 57.0 56 48.2
Nitab4.5_0000922g0050 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.3e-06 57.0 116 33.6
Phvul.003G019600 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 1.3e-06 57.0 114 27.2
RcHm_v2.0_Chr7g0178551 Rosa chinensis HOM05D000135 ORTHO05D000203 1.3e-06 57.0 113 29.2
Sp7g04260 Schrenkiella parvula HOM05D000135 ORTHO05D000203 1.3e-06 57.0 116 30.2
vmacro23116 Vaccinium macrocarpon HOM05D000135 ORTHO05D000203 1.3e-06 57.0 116 31.0
Ah.16g101220 Amaranthus hybridus HOM05D000135 ORTHO05D000203 1.7e-06 56.6 116 31.0
Lj3P181T31 Lonicera japonica HOM05D000135 ORTHO05D000203 1.7e-06 56.6 56 42.9
Lj3P188T13 Lonicera japonica HOM05D000135 ORTHO05D000203 1.7e-06 56.6 56 42.9
Nitab4.5_0024537g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.7e-06 56.6 116 32.8
Psat7g209840 Pisum sativum HOM05D000135 ORTHO05D000203 1.7e-06 56.6 118 28.8
Solyc03g118810.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 1.7e-06 56.6 118 30.5
Sopen03g037760 Solanum pennellii HOM05D000135 ORTHO05D000203 1.7e-06 56.6 118 30.5
Thecc.01G209500 Theobroma cacao HOM05D000135 ORTHO05D000203 1.7e-06 56.6 118 38.1
MSTRG.4573 Avicennia marina HOM05D000135 ORTHO05D000203 2.2e-06 56.2 119 27.7
MELO3C020900.2 Cucumis melo HOM05D000135 ORTHO05D000203 2.2e-06 56.2 58 53.4
CsaV3_5G028160 Cucumis sativus L. HOM05D000135 ORTHO05D000203 2.2e-06 56.2 116 29.3
Gorai.005G128600 Gossypium raimondii HOM05D000135 ORTHO05D000203 2.2e-06 56.2 56 44.6
Medtr5g017540 Medicago truncatula HOM05D000135 ORTHO05D000203 2.2e-06 56.2 61 44.3
Sabra07G0105100 Salix brachista HOM05D000135 ORTHO05D000203 2.2e-06 56.2 118 38.1
TWI18G1275 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 2.2e-06 56.2 67 35.8
A04p09090 Brassica napus HOM05D000135 ORTHO05D000203 2.9e-06 55.8 65 41.5
C04p43020 Brassica napus HOM05D000135 ORTHO05D000203 2.9e-06 55.8 65 41.5
BolC4t25874H Brassica oleracea HOM05D000135 ORTHO05D000203 2.9e-06 55.8 65 41.5
BraA04t16604Z Brassica rapa HOM05D000135 ORTHO05D000203 2.9e-06 55.8 65 41.5
MELO3C005272.2 Cucumis melo HOM05D000135 ORTHO05D000203 2.9e-06 55.8 116 29.3
Duzib211G0220 Durio zibethinus HOM05D000135 ORTHO05D000203 2.9e-06 55.8 118 39.0
Duzib212G0491 Durio zibethinus HOM05D000135 ORTHO05D000203 2.9e-06 55.8 118 39.8
Gohir.D02G112400 Gossypium hirsutum HOM05D000135 ORTHO05D000203 2.9e-06 55.8 118 39.8
Lalb_Chr03g0026101 Lupinus albus HOM05D000135 ORTHO05D000203 2.9e-06 55.8 118 27.1
Lalb_Chr16g0378511 Lupinus albus HOM05D000135 ORTHO05D000203 2.9e-06 55.8 61 45.9
Peaxi162Scf00207g00006 Petunia axillaris HOM05D000135 ORTHO05D000203 2.9e-06 55.8 116 29.3
Actinidia27955 Actinidia chinensis HOM05D000135 ORTHO05D000203 3.8e-06 55.5 114 30.7
Aa31LG5G13910 Aethionema arabicum HOM05D000135 ORTHO05D011359 3.8e-06 55.5 63 47.6
BcaC02g08883 Brassica carinata HOM05D000135 ORTHO05D000203 3.8e-06 55.5 119 34.5
A07p33360 Brassica napus HOM05D000135 ORTHO05D000203 3.8e-06 55.5 114 37.7
C04p49500 Brassica napus HOM05D000135 ORTHO05D000203 3.8e-06 55.5 119 34.5
BolC4t26538H Brassica oleracea HOM05D000135 ORTHO05D000203 3.8e-06 55.5 119 34.5
BraA07t30964Z Brassica rapa HOM05D000135 ORTHO05D000203 3.8e-06 55.5 114 37.7
CBR_g17086 Chara braunii HOM05D000135 ORTHO05D000203 3.8e-06 55.5 118 32.2
Ca_20790_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 3.8e-06 55.5 118 28.0
Duzib133G0071 Durio zibethinus HOM05D000135 ORTHO05D000203 3.8e-06 55.5 118 39.0
Duzib268G1408 Durio zibethinus HOM05D000135 ORTHO05D000203 3.8e-06 55.5 118 38.1
Glyma.01G185600 Glycine max HOM05D000135 ORTHO05D000203 3.8e-06 55.5 61 45.9
HanXRQChr11g0324291 Helianthus annuus HOM05D000135 ORTHO05D000203 3.8e-06 55.5 119 29.4
CiPaw.01G099700 Carya illinoinensis HOM05D000135 ORTHO05D000203 4.9e-06 55.1 66 37.9
FAN03G1486 Fragaria x ananassa HOM05D000135 ORTHO05D000203 4.9e-06 55.1 69 39.1
FAN07G1946 Fragaria x ananassa HOM05D000135 ORTHO05D000203 4.9e-06 55.1 118 29.7
FAN16G3292 Fragaria x ananassa HOM05D000135 ORTHO05D000203 4.9e-06 55.1 69 39.1
FAN28G2192 Fragaria x ananassa HOM05D000135 ORTHO05D000203 4.9e-06 55.1 69 39.1
MBI18_g12434_MAGBIO Magnolia biondii HOM05D000135 ORTHO05D000203 4.9e-06 55.1 117 26.5
Medtr4g067270 Medicago truncatula HOM05D000135 ORTHO05D000203 4.9e-06 55.1 118 28.0
Medtr5g017510 Medicago truncatula HOM05D000135 ORTHO05D000203 4.9e-06 55.1 62 48.4
Medtr5g017560 Medicago truncatula HOM05D000135 ORTHO05D000203 4.9e-06 55.1 62 48.4
QL10p049466 Quercus lobata HOM05D000135 ORTHO05D000203 4.9e-06 55.1 121 35.5
Sp7g09590 Schrenkiella parvula HOM05D000135 ORTHO05D000203 4.9e-06 55.1 65 40.0
AL9U11650 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 6.4e-06 54.7 65 36.9
EL10Ac1g00489 Beta vulgaris HOM05D000135 ORTHO05D000203 6.4e-06 54.7 117 27.4
BcaB06g27704 Brassica carinata HOM05D000135 ORTHO05D000203 6.4e-06 54.7 119 34.5
BcaC07g36819 Brassica carinata HOM05D000135 ORTHO05D000203 6.4e-06 54.7 56 44.6
CSS0038594 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 6.4e-06 54.7 66 37.9
CSS0046428 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 6.4e-06 54.7 66 37.9
Haze_10887 Corylus avellana HOM05D000135 ORTHO05D000203 6.4e-06 54.7 116 28.4
Duzib138G1141 Durio zibethinus HOM05D000135 ORTHO05D000203 6.4e-06 54.7 116 38.8
FAN17G0225 Fragaria x ananassa HOM05D000135 ORTHO05D000203 6.4e-06 54.7 69 39.1
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 6.4e-06 54.7 114 33.3
Nn3g20143 Nelumbo nucifera HOM05D000135 ORTHO05D000203 6.4e-06 54.7 118 36.4
Oeu034458.1 Olea europaea HOM05D000135 ORTHO05D000203 6.4e-06 54.7 117 35.0
Potri.007G128600 Populus trichocarpa HOM05D000135 ORTHO05D000203 6.4e-06 54.7 118 38.1
Potri.017G029700 Populus trichocarpa HOM05D000135 ORTHO05D000203 6.4e-06 54.7 118 39.0
Rhsim09G0029100 Rhododendron simsii HOM05D000135 ORTHO05D000203 6.4e-06 54.7 66 36.4
Rhsim09G0089800 Rhododendron simsii HOM05D000135 ORTHO05D000203 6.4e-06 54.7 116 30.2
AL4G41970 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 8.4e-06 54.3 66 36.4
AT2G43290 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 8.4e-06 54.3 66 36.4
AT4G12860 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 8.4e-06 54.3 65 36.9
BolC8t47748H Brassica oleracea HOM05D000135 ORTHO05D000203 8.4e-06 54.3 65 38.5
Carub.0004s2576 Capsella rubella HOM05D000135 ORTHO05D000203 8.4e-06 54.3 66 36.4
CARHR138380 Cardamine hirsuta HOM05D000135 ORTHO05D000203 8.4e-06 54.3 66 36.4
Cpa.g.sc9.284 Carica papaya HOM05D000135 ORTHO05D000203 8.4e-06 54.3 118 39.0
COL.COLO4_02799 Corchorus olitorius HOM05D000135 ORTHO05D000203 8.4e-06 54.3 118 38.1
Thhalv10001753m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 8.4e-06 54.3 66 36.4
FvH4_4g10830 Fragaria vesca HOM05D000135 ORTHO05D000203 8.4e-06 54.3 69 39.1
FAN12G3856 Fragaria x ananassa HOM05D000135 ORTHO05D000203 8.4e-06 54.3 69 39.1
FAN24G3438 Fragaria x ananassa HOM05D000135 ORTHO05D000203 8.4e-06 54.3 56 46.4
Gohir.D07G202500 Gossypium hirsutum HOM05D000135 ORTHO05D000203 8.4e-06 54.3 66 39.4
Gorai.001G227900 Gossypium raimondii HOM05D000135 ORTHO05D000203 8.4e-06 54.3 66 39.4
Lj3g0028251 Lotus japonicus HOM05D000135 ORTHO05D000203 8.4e-06 54.3 118 28.0
Mapoly0042s0115 Marchantia polymorpha HOM05D000135 ORTHO05D000203 8.4e-06 54.3 112 31.2


User provided reference genes

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