Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43099 Brassica carinata HOM05D002115 ORTHO05D002263 1.5e-45 185.7 84 100.0
BcaNung05018 Brassica carinata HOM05D002115 ORTHO05D002263 1.5e-45 185.7 84 100.0
C06p03680 Brassica napus HOM05D002115 ORTHO05D002263 2.0e-42 175.3 79 100.0
BolC6t35507H Brassica oleracea HOM05D002115 ORTHO05D002263 2.0e-42 175.3 79 100.0
AL1G55780 Arabidopsis lyrata HOM05D002115 ORTHO05D002263 6.2e-31 137.1 78 76.9
Carub.0001s3812 Capsella rubella HOM05D002115 ORTHO05D002263 8.0e-31 136.7 76 78.9
Sp1g35860 Schrenkiella parvula HOM05D002115 ORTHO05D002263 5.2e-30 134.0 66 87.9
AT1G48950 Arabidopsis thaliana HOM05D002115 ORTHO05D002263 6.8e-30 133.7 76 77.6
Thhalv10011335m.g Eutrema salsugineum HOM05D002115 ORTHO05D002263 6.8e-30 133.7 65 87.7
BcaB04g17377 Brassica carinata HOM05D002115 ORTHO05D002263 2.0e-29 132.1 77 75.3
A08p04290 Brassica napus HOM05D002115 ORTHO05D002263 2.0e-29 132.1 77 75.3
BraA08t32456Z Brassica rapa HOM05D002115 ORTHO05D002263 4.4e-29 131.0 77 74.0
C08p04560 Brassica napus HOM05D002115 ORTHO05D002263 5.8e-29 130.6 77 74.0
BolC8t47260H Brassica oleracea HOM05D002115 ORTHO05D002263 5.8e-29 130.6 77 74.0
BcaC07g37092 Brassica carinata HOM05D002115 ORTHO05D002263 1.3e-28 129.4 77 74.0
CARHR038960 Cardamine hirsuta HOM05D002115 ORTHO05D002263 3.7e-28 127.9 76 71.1
THA.LOC104820411 Tarenaya hassleriana HOM05D002115 ORTHO05D002263 1.2e-21 106.3 79 58.2
QL10p023276 Quercus lobata HOM05D002115 ORTHO05D002263 1.7e-17 92.4 70 61.4
CANSAT80G1296 Cannabis sativa HOM05D002115 ORTHO05D002263 2.3e-17 92.0 81 56.8
Lsat_1_v5_gn_4_112060 Lactuca sativa HOM05D002115 ORTHO05D002263 6.6e-17 90.5 86 48.8
Migut.I00399 Erythranthe guttata HOM05D002115 ORTHO05D002263 3.3e-16 88.2 73 54.8
Haze_18585 Corylus avellana HOM05D002115 ORTHO05D002263 4.3e-16 87.8 80 53.8
CiPaw.15G125000 Carya illinoinensis HOM05D002115 ORTHO05D002263 7.3e-16 87.0 67 58.2
Cpa.g.sc13.69 Carica papaya HOM05D002115 ORTHO05D002263 9.5e-16 86.7 64 60.9
MD06G1209700 Malus domestica HOM05D002115 ORTHO05D002263 1.6e-15 85.9 61 60.7
MD14G1220400 Malus domestica HOM05D002115 ORTHO05D002263 2.1e-15 85.5 62 59.7
RcHm_v2.0_Chr7g0184391 Rosa chinensis HOM05D002115 ORTHO05D002263 2.1e-15 85.5 61 63.9
Cfa019839 Carpinus fangiana HOM05D002115 ORTHO05D002263 2.8e-15 85.1 78 53.8
PGR044G1254 Punica granatum HOM05D002115 ORTHO05D002263 6.2e-15 84.0 68 61.8
GSVIVG01008221001 Vitis vinifera HOM05D002115 ORTHO05D002263 6.2e-15 84.0 76 53.9
PGSC0003DMG400005617 Solanum tuberosum HOM05D002115 ORTHO05D002263 8.1e-15 83.6 82 50.0
Prupe.5G215700 Prunus persica HOM05D002115 ORTHO05D002263 1.1e-14 83.2 61 59.0
Rhsim08G0138600 Rhododendron simsii HOM05D002115 ORTHO05D002263 1.1e-14 83.2 68 58.8
Sopen03g038730 Solanum pennellii HOM05D002115 ORTHO05D002263 1.1e-14 83.2 82 48.8
vmacro17687 Vaccinium macrocarpon HOM05D002115 ORTHO05D002263 1.1e-14 83.2 65 60.0
GSVIVG01022738001 Vitis vinifera HOM05D002115 ORTHO05D002263 1.1e-14 83.2 83 48.2
Aqoxy3G03873 Aquilegia oxysepala HOM05D002115 ORTHO05D002263 1.4e-14 82.8 70 54.3
AUR62032177 Chenopodium quinoa HOM05D002115 ORTHO05D002263 1.4e-14 82.8 69 56.5
FvH4_5g12830 Fragaria vesca HOM05D002115 ORTHO05D002263 1.4e-14 82.8 61 62.3
FAN18G1117 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.4e-14 82.8 61 62.3
FAN18G4052 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.4e-14 82.8 61 62.3
Atru.chr9.725 Acer truncatum HOM05D002115 ORTHO05D002263 1.8e-14 82.4 68 55.9
FAN13G0771 Fragaria x ananassa HOM05D002115 ORTHO05D002263 1.8e-14 82.4 74 56.8
FAN08G0485 Fragaria x ananassa HOM05D002115 ORTHO05D002263 3.1e-14 81.6 61 63.9
Sc12g0006820 Simmondsia chinensis HOM05D002115 ORTHO05D002263 3.1e-14 81.6 82 46.3
TAR622G1398 Trochodendron aralioides HOM05D002115 ORTHO05D002263 3.1e-14 81.6 70 51.4
Sabra15G0077500 Salix brachista HOM05D002115 ORTHO05D002263 4.0e-14 81.3 64 60.9
AUR62036937 Chenopodium quinoa HOM05D002115 ORTHO05D002263 5.2e-14 80.9 69 55.1
CsaV3_1G006430 Cucumis sativus L. HOM05D002115 ORTHO05D002263 5.2e-14 80.9 69 56.5
ECA232G2843 Erigeron canadensis HOM05D002115 ORTHO05D002263 5.2e-14 80.9 80 46.2
DCAR_011336 Daucus carota HOM05D002115 ORTHO05D002263 6.8e-14 80.5 76 53.9
Sed0001077 Sechium edule HOM05D002115 ORTHO05D002263 6.8e-14 80.5 66 59.1
SGA_v2.0_scaffold25G10978 Striga asiatica HOM05D002115 ORTHO05D002263 6.8e-14 80.5 65 56.9
CAN.G438.104 Capsicum annuum HOM05D002115 ORTHO05D002263 8.9e-14 80.1 82 47.6
Cc04_g07660 Coffea canephora HOM05D002115 ORTHO05D002263 8.9e-14 80.1 65 53.8
Ciclev10019188m.g Citrus clementina HOM05D002115 ORTHO05D002263 1.2e-13 79.7 64 62.5
Solyc03g119870.3 Solanum lycopersicum HOM05D002115 ORTHO05D002263 1.2e-13 79.7 82 47.6
CSS0028652 Camellia sinensis var. sinensis HOM05D002115 ORTHO05D002263 1.5e-13 79.3 85 47.1
TPR.G26765 Trifolium pratense HOM05D002115 ORTHO05D002263 1.5e-13 79.3 68 58.8
TWI60G1253 Tripterygium wilfordii HOM05D002115 ORTHO05D002263 1.5e-13 79.3 79 48.1
Lalb_Chr13g0302441 Lupinus albus HOM05D002115 ORTHO05D002263 2.6e-13 78.6 83 49.4
Medtr4g111710 Medicago truncatula HOM05D002115 ORTHO05D002263 2.6e-13 78.6 66 57.6
Potri.015G052400 Populus trichocarpa HOM05D002115 ORTHO05D002263 2.6e-13 78.6 65 61.5
Ah.02g114460 Amaranthus hybridus HOM05D002115 ORTHO05D002263 3.4e-13 78.2 81 46.9
HanXRQChr09g0269821 Helianthus annuus HOM05D002115 ORTHO05D002263 3.4e-13 78.2 77 44.2
VMungo1215G1940 Vigna mungo HOM05D002115 ORTHO05D002263 3.4e-13 78.2 70 54.3
Duzib068G0172 Durio zibethinus HOM05D002115 ORTHO05D002263 4.4e-13 77.8 76 55.3
MELO3C002069.2 Cucumis melo HOM05D002115 ORTHO05D002263 5.8e-13 77.4 66 56.1
Ca_02528_v3 Cicer arietinum L. HOM05D002115 ORTHO05D002263 7.6e-13 77.0 72 52.8
Glyma.05G014400 Glycine max HOM05D002115 ORTHO05D002263 7.6e-13 77.0 68 55.9
Nitab4.5_0003716g0010 Nicotiana tabacum HOM05D002115 ORTHO05D002263 9.9e-13 76.6 64 56.2
Psat4g046640 Pisum sativum HOM05D002115 ORTHO05D002263 9.9e-13 76.6 68 58.8
MSTRG.11317 Avicennia marina HOM05D002115 ORTHO05D002263 1.7e-12 75.9 75 46.7
Hund02529 Selenicereus undatus HOM05D002115 ORTHO05D002263 2.2e-12 75.5 67 47.8
Dinv38599 Davidia involucrata HOM05D002115 ORTHO05D002263 2.9e-12 75.1 75 49.3
Phvul.003G178600 Phaseolus vulgaris HOM05D002115 ORTHO05D002263 2.9e-12 75.1 68 55.9
Lj4g0016114 Lotus japonicus HOM05D002115 ORTHO05D002263 3.8e-12 74.7 68 54.4
PSO782G0522 Papaver somniferum HOM05D002115 ORTHO05D002263 3.8e-12 74.7 76 44.7
ClCG04G011340 Citrullus lanatus HOM05D002115 ORTHO05D002263 4.9e-12 74.3 73 52.1
PSO063G6529 Papaver somniferum HOM05D002115 ORTHO05D002263 4.9e-12 74.3 76 44.7
Glyma.17G122700 Glycine max HOM05D002115 ORTHO05D002263 6.4e-12 73.9 70 52.9
Thecc.03G026600 Theobroma cacao HOM05D002115 ORTHO05D002263 6.4e-12 73.9 67 53.7
Gohir.A07G040700 Gossypium hirsutum HOM05D002115 ORTHO05D002263 8.4e-12 73.6 67 55.2
Lj5A141T88 Lonicera japonica HOM05D002115 ORTHO05D002263 8.4e-12 73.6 75 48.0
Potri.012G058550 Populus trichocarpa HOM05D002115 ORTHO05D002263 8.4e-12 73.6 67 55.2
Eucgr.K02649 Eucalyptus grandis HOM05D002115 ORTHO05D002263 1.4e-11 72.8 64 56.2
CDE06G0472 Ceratophyllum demersum HOM05D002115 ORTHO05D002263 1.9e-11 72.4 70 45.7
Nitab4.5_0000410g0200 Nicotiana tabacum HOM05D002115 ORTHO05D002263 1.9e-11 72.4 64 54.7
Gorai.001G047900 Gossypium raimondii HOM05D002115 ORTHO05D002263 3.2e-11 71.6 67 53.7
Nn3g17679 Nelumbo nucifera HOM05D002115 ORTHO05D002263 7.1e-11 70.5 52 59.6
arahy.Tifrunner.gnm1.ann1.PSZ3R8 Arachis hypogaea HOM05D002115 ORTHO05D002263 1.6e-10 69.3 79 45.6
arahy.Tifrunner.gnm1.ann1.SC3UAH Arachis hypogaea HOM05D002115 ORTHO05D002263 1.6e-10 69.3 79 45.6
TAR374G1284 Trochodendron aralioides HOM05D002115 ORTHO05D002263 1.6e-10 69.3 66 50.0
Oeu031805.1 Olea europaea HOM05D002115 ORTHO05D002263 2.7e-10 68.6 58 53.4
unitig_899.g15492 Utricularia gibba HOM05D002115 ORTHO05D002263 3.5e-10 68.2 60 53.3
EL10Ac5g11237 Beta vulgaris HOM05D002115 ORTHO05D002263 8.7e-09 63.5 40 62.5
HPP92_024704 Vanilla planifolia HOM05D002115 ORTHO05D002263 3.3e-08 61.6 72 48.6
Peaxi162Scf00015g00622 Petunia axillaris HOM05D002115 ORTHO05D002263 4.3e-08 61.2 42 59.5
Zm00001eb357790 Zea mays HOM05D002115 ORTHO05D002263 7.3e-08 60.5 80 42.5
ATR0559G005 Amborella trichopoda HOM05D002115 ORTHO05D002263 2.8e-07 58.5 83 37.3
AagrBONN_evm.TU.Sc2ySwM_344.1038 Anthoceros agrestis HOM05D002115 ORTHO05D002263 4.0e-06 54.7 80 36.2
Os01g0605650 Oryza sativa ssp. japonica HOM05D002115 ORTHO05D002263 9.0e-06 53.5 68 45.6


User provided reference genes

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