Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 2.3e-199 698.7 363 100.0
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.1e-198 696.4 363 99.7
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.1e-190 669.8 368 95.7
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 3.7e-189 664.8 393 90.3
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.4e-188 662.1 366 93.7
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.3e-183 646.4 401 87.0
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.3e-175 619.0 366 86.9
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.6e-163 579.7 366 83.1
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 7.7e-163 577.4 366 82.0
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.5e-161 572.4 381 80.6
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 7.2e-161 570.9 367 81.2
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.3e-159 565.8 364 82.1
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.7e-149 533.1 365 75.9
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 7.2e-145 517.7 376 73.9
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.6e-144 516.5 364 74.2
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 8.0e-144 514.2 363 73.3
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.5e-142 510.0 372 72.3
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 9.8e-142 507.3 361 72.3
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.3e-141 506.9 363 71.9
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 4.1e-140 501.9 363 71.9
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.5e-139 498.8 368 71.5
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.1e-137 493.8 348 73.3
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.4e-135 486.9 358 70.4
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.3e-133 480.3 366 69.7
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.7e-133 479.9 366 70.2
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 6.4e-133 478.0 371 68.7
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 2.4e-132 476.1 365 69.9
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.4e-132 474.9 368 68.8
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.2e-131 473.8 348 70.4
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.0e-130 470.7 376 67.8
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.0e-130 470.7 345 70.4
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 3.9e-130 468.8 345 70.4
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 2.6e-126 456.1 370 66.8
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.8e-119 431.4 370 62.2
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.9e-118 427.6 370 61.4
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.9e-117 425.2 370 61.1
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.3e-114 417.2 368 61.7
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 2.3e-114 416.4 368 60.6
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 5.1e-114 415.2 371 58.5
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 8.6e-114 414.5 371 59.8
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 4.7e-112 408.7 371 58.8
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 6.2e-112 408.3 366 57.7
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 6.2e-112 408.3 365 59.5
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.8e-111 406.8 366 57.7
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 2.0e-110 403.3 364 58.8
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.0e-110 403.3 378 57.7
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-109 400.6 365 58.1
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 2.2e-109 399.8 369 57.2
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 8.4e-109 397.9 370 58.4
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-108 397.1 364 57.7
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 5.4e-108 395.2 369 56.4
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.7e-107 392.9 291 71.1
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 3.0e-106 389.4 369 56.4
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 8.7e-106 387.9 368 54.1
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.1e-105 387.5 374 54.5
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.5e-105 386.3 369 56.6
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 2.5e-105 386.3 366 53.3
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 5.6e-105 385.2 370 57.3
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 7.3e-105 384.8 365 57.3
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 4.7e-104 382.1 371 55.3
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.1e-103 380.9 371 55.0
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 1.1e-103 380.9 370 54.1
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.8e-103 380.2 367 55.3
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 4.0e-103 379.0 367 54.8
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.0e-102 376.7 366 53.8
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.6e-102 376.3 366 54.4
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 5.8e-102 375.2 366 54.4
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.3e-101 374.0 366 54.4
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.9e-101 372.9 366 53.8
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.2e-100 369.4 366 53.3
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 4.2e-100 369.0 369 53.1
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 1.2e-99 367.5 366 54.4
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 1.6e-99 367.1 366 54.1
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 3.5e-99 365.9 368 53.0
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 3.5e-99 365.9 368 53.0
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.6e-99 365.5 366 52.7
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 6.0e-99 365.2 366 52.7
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.3e-98 364.0 381 51.7
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.3e-98 364.0 366 52.2
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 1.3e-98 364.0 367 53.1
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.7e-98 363.6 365 54.5
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 2.3e-98 363.2 364 52.5
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 3.0e-98 362.8 367 53.4
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 3.9e-98 362.5 366 54.1
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 6.6e-98 361.7 367 52.6
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.5e-97 360.5 366 53.6
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 3.3e-97 359.4 365 53.7
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 5.6e-97 358.6 369 53.1
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 7.3e-97 358.2 360 50.3
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.6e-96 357.1 369 51.8
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 2.1e-96 356.7 400 48.0
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 2.8e-96 356.3 367 51.5
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.6e-96 355.9 368 51.4
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 6.2e-96 355.1 369 54.2
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 8.1e-96 354.8 372 50.5
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 3.1e-95 352.8 400 48.2
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 5.3e-95 352.1 360 51.4
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 9.0e-95 351.3 371 52.0
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.6e-94 349.7 387 49.9
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.2e-93 346.7 363 52.6
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 6.4e-93 345.1 362 49.4
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.1e-92 344.4 365 52.6
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 2.7e-91 339.7 321 57.9
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 2.7e-91 339.7 370 48.4
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.6e-91 339.0 371 50.4
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 3.0e-90 336.3 310 57.1
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.5e-89 333.2 330 53.3
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.6e-88 330.5 484 42.4
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 2.8e-88 329.7 369 49.1
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 3.7e-88 329.3 363 47.9
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.8e-87 327.0 374 47.6
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.4e-86 322.8 316 56.3
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.3e-85 320.9 371 47.7
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.2e-85 320.1 393 44.8
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 2.9e-85 319.7 506 39.3
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.1e-84 317.8 363 50.4
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 1.4e-84 317.4 294 57.5
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 9.3e-84 314.7 368 47.8
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.2e-83 314.3 286 56.6
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.3e-82 310.8 316 54.7
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 1.8e-82 310.5 358 45.8
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.4e-79 300.1 318 51.6
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 4.0e-79 299.3 370 43.8
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 5.3e-79 298.9 373 45.6
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.3e-77 294.3 370 45.9
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.2e-77 293.5 309 51.1
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.9e-76 290.4 312 51.6
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 3.5e-75 286.2 362 45.6
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 2.3e-74 283.5 558 36.7
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.7e-64 249.6 209 64.1
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.3e-64 248.8 208 62.0
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 2.4e-63 246.9 209 61.2
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 7.7e-62 241.9 472 32.4
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.4e-60 237.7 228 53.5
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.2e-59 234.6 207 57.5
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 4.8e-56 222.6 309 41.1
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.5e-54 217.6 178 64.0
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.5e-54 217.6 317 39.4
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.7e-53 214.2 178 63.5
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.9e-53 213.4 178 63.5
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.8e-53 213.0 157 68.8
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 6.5e-53 212.2 383 34.5
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.2e-51 208.0 301 43.5
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.2e-51 208.0 337 36.2
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.7e-51 206.8 204 53.9
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.0e-51 205.3 204 53.4
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 8.0e-51 205.3 170 64.7
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.8e-50 204.1 163 65.0
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.1e-49 201.4 162 62.3
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.7e-48 197.6 202 52.0
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.4e-47 193.7 178 59.6
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.7e-43 180.3 367 32.4
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.6e-43 179.9 373 33.5
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.6e-43 179.9 155 59.4
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 1.8e-42 177.6 283 42.0
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.2e-42 176.0 380 31.8
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.6e-41 173.7 224 51.8
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.2e-40 170.6 382 31.9
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 6.3e-40 169.1 380 30.0
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 8.5e-37 158.7 255 37.3
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.4e-34 151.4 130 61.5
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 5.7e-33 146.0 200 37.5
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.8e-31 141.0 370 27.3
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.2e-30 138.3 159 47.2
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 2.0e-30 137.5 126 54.8
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.5e-30 136.7 156 45.5
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.5e-30 136.3 104 69.2
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.9e-30 136.0 153 54.2
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 5.0e-29 132.9 156 44.2
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 4.0e-26 123.2 134 47.8
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 2.4e-23 114.0 172 36.0
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 9.2e-23 112.1 130 43.1
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 1.9e-20 104.4 137 43.1
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 2.5e-20 104.0 137 42.3
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 2.0e-14 84.3 258 27.1
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.1e-10 72.0 304 27.0
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 9.2e-07 58.9 225 24.4


User provided reference genes

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