Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43059 Brassica carinata HOM05D007068 ORTHO05D008590 2.0e-261 905.2 460 100.0
BolC6t35436H Brassica oleracea HOM05D007068 ORTHO05D008590 2.0e-261 905.2 460 100.0
C06p03180 Brassica napus HOM05D007068 ORTHO05D008590 1.1e-238 829.7 460 93.7
A06p04350 Brassica napus HOM05D007068 ORTHO05D008590 3.7e-210 734.9 465 84.5
BcaB07g33743 Brassica carinata HOM05D007068 ORTHO05D008590 7.1e-206 720.7 467 83.3
BraA06t23639Z Brassica rapa HOM05D007068 ORTHO05D008590 1.9e-203 712.6 494 78.7
Sp1g35530 Schrenkiella parvula HOM05D007068 ORTHO05D008590 2.2e-175 619.4 467 73.7
Thhalv10011472m.g Eutrema salsugineum HOM05D007068 ORTHO05D008590 3.2e-174 615.5 472 72.5
CARHR038180 Cardamine hirsuta HOM05D007068 ORTHO05D008590 7.0e-161 571.2 472 68.9
AL1G55220 Arabidopsis lyrata HOM05D007068 ORTHO05D008590 4.5e-160 568.5 471 68.6
Carub.0001s3769 Capsella rubella HOM05D007068 ORTHO05D008590 1.0e-159 567.4 470 68.1
AT1G48580 Arabidopsis thaliana HOM05D007068 ORTHO05D008590 1.7e-159 566.6 472 68.2
Aa31LG10G5220 Aethionema arabicum HOM05D007068 ORTHO05D008590 3.9e-127 459.1 478 58.2
Atru.chr9.1734 Acer truncatum HOM05D007068 ORTHO05D008590 2.9e-66 256.9 468 39.3
Thecc.03G056900 Theobroma cacao HOM05D007068 ORTHO05D008590 3.3e-62 243.4 459 39.4
Sabra12G0033000 Salix brachista HOM05D007068 ORTHO05D008590 8.2e-61 238.8 493 38.1
Potri.012G047000 Populus trichocarpa HOM05D007068 ORTHO05D008590 3.1e-60 236.9 464 39.7
Duzib084G0836 Durio zibethinus HOM05D007068 ORTHO05D008590 1.6e-59 234.6 471 38.2
Cfa019656 Carpinus fangiana HOM05D007068 ORTHO05D008590 4.2e-57 226.5 471 35.9
Eucgr.K02273 Eucalyptus grandis HOM05D007068 ORTHO05D008590 1.0e-55 221.9 489 35.8
COL.COLO4_04377 Corchorus olitorius HOM05D007068 ORTHO05D008590 6.7e-55 219.2 459 37.0
Hma1.2p1_0669F.1_g200120 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 2.8e-53 213.8 485 34.4
Cpa.g.sc3.397 Carica papaya HOM05D007068 ORTHO05D008590 3.1e-52 210.3 474 36.3
Rhsim08G0124500 Rhododendron simsii HOM05D007068 ORTHO05D008590 3.1e-52 210.3 461 35.1
Dinv17551 Davidia involucrata HOM05D007068 ORTHO05D008590 4.1e-52 209.9 443 38.1
Oeu031766.1 Olea europaea HOM05D007068 ORTHO05D008590 7.0e-52 209.1 488 34.6
CiPaw.16G093400 Carya illinoinensis HOM05D007068 ORTHO05D008590 9.1e-52 208.8 475 34.5
Haze_18849 Corylus avellana HOM05D007068 ORTHO05D008590 9.1e-52 208.8 489 34.2
Sed0003101 Sechium edule HOM05D007068 ORTHO05D008590 9.1e-52 208.8 490 32.7
TAR622G0435 Trochodendron aralioides HOM05D007068 ORTHO05D008590 1.6e-51 208.0 490 34.1
Gohir.D07G066400 Gossypium hirsutum HOM05D007068 ORTHO05D008590 2.0e-51 207.6 467 36.4
PGSC0003DMG400005672 Solanum tuberosum HOM05D007068 ORTHO05D008590 1.0e-50 205.3 460 33.5
Gorai.001G070000 Gossypium raimondii HOM05D007068 ORTHO05D008590 2.2e-50 204.1 469 35.8
Gohir.A07G061700 Gossypium hirsutum HOM05D007068 ORTHO05D008590 1.5e-49 201.4 466 35.6
CANSAT80G0386 Cannabis sativa HOM05D007068 ORTHO05D008590 5.5e-49 199.5 465 35.3
Solyc03g118700.3 Solanum lycopersicum HOM05D007068 ORTHO05D008590 7.2e-49 199.1 465 34.0
RcHm_v2.0_Chr7g0178441 Rosa chinensis HOM05D007068 ORTHO05D008590 1.6e-48 198.0 461 35.4
SalBow1G5613 Salvia bowleyana HOM05D007068 ORTHO05D008590 1.0e-47 195.3 477 32.5
Actinidia39838 Actinidia chinensis HOM05D007068 ORTHO05D008590 1.4e-47 194.9 477 34.2
MELO3C017359.2 Cucumis melo HOM05D007068 ORTHO05D008590 1.8e-47 194.5 487 32.9
Migut.D01541 Erythranthe guttata HOM05D007068 ORTHO05D008590 5.2e-47 193.0 485 33.8
CsaV3_1G004370 Cucumis sativus L. HOM05D007068 ORTHO05D008590 1.2e-46 191.8 492 32.5
CSS0009831 Camellia sinensis var. sinensis HOM05D007068 ORTHO05D008590 2.6e-46 190.7 479 35.1
QL10p029594 Quercus lobata HOM05D007068 ORTHO05D008590 2.6e-46 190.7 410 36.1
CAN.G843.56 Capsicum annuum HOM05D007068 ORTHO05D008590 3.4e-46 190.3 472 33.1
Nn3g18277 Nelumbo nucifera HOM05D007068 ORTHO05D008590 5.7e-46 189.5 522 32.2
Prupe.5G233500 Prunus persica HOM05D007068 ORTHO05D008590 1.7e-45 188.0 327 38.5
FvH4_5g17330 Fragaria vesca HOM05D007068 ORTHO05D008590 1.4e-44 184.9 465 34.8
FAN18G2889 Fragaria x ananassa HOM05D007068 ORTHO05D008590 1.4e-44 184.9 465 34.8
Lalb_Chr16g0386991 Lupinus albus HOM05D007068 ORTHO05D008590 9.1e-44 182.2 470 32.6
Nitab4.5_0003401g0040 Nicotiana tabacum HOM05D007068 ORTHO05D008590 1.2e-43 181.8 254 45.3
Nitab4.5_0004556g0050 Nicotiana tabacum HOM05D007068 ORTHO05D008590 1.6e-43 181.4 466 33.3
Cc04_g06260 Coffea canephora HOM05D007068 ORTHO05D008590 1.7e-42 177.9 480 32.5
Manes.14G171300 Manihot esculenta HOM05D007068 ORTHO05D008590 8.6e-42 175.6 478 33.7
PSO478G2297 Papaver somniferum HOM05D007068 ORTHO05D008590 1.1e-41 175.3 460 33.3
Aqoxy3G00060 Aquilegia oxysepala HOM05D007068 ORTHO05D008590 1.5e-41 174.9 489 32.9
Medtr8g107330 Medicago truncatula HOM05D007068 ORTHO05D008590 1.5e-41 174.9 478 31.8
arahy.Tifrunner.gnm1.ann1.N01HH5 Arachis hypogaea HOM05D007068 ORTHO05D008590 3.3e-41 173.7 260 42.3
PSO017G3869 Papaver somniferum HOM05D007068 ORTHO05D008590 3.3e-41 173.7 468 32.9
FAN13G0457 Fragaria x ananassa HOM05D007068 ORTHO05D008590 4.2e-41 173.3 470 35.7
Peaxi162Scf00683g00453 Petunia axillaris HOM05D007068 ORTHO05D008590 4.2e-41 173.3 462 33.3
VMungo0251G0101 Vigna mungo HOM05D007068 ORTHO05D008590 2.8e-40 170.6 244 40.6
Ca_17189_v3 Cicer arietinum L. HOM05D007068 ORTHO05D008590 3.6e-40 170.2 457 30.4
ClCG06G014310 Citrullus lanatus HOM05D007068 ORTHO05D008590 8.0e-40 169.1 497 31.4
MD06G1227000 Malus domestica HOM05D007068 ORTHO05D008590 8.0e-40 169.1 281 39.5
GSVIVG01011540001 Vitis vinifera HOM05D007068 ORTHO05D008590 1.0e-39 168.7 458 31.0
SGA_v2.0_scaffold36G14383 Striga asiatica HOM05D007068 ORTHO05D008590 1.4e-39 168.3 469 30.9
FAN04G2769 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.3e-39 167.5 467 33.6
Lj4g0019727 Lotus japonicus HOM05D007068 ORTHO05D008590 4.0e-39 166.8 455 33.2
Psat7g003560 Pisum sativum HOM05D007068 ORTHO05D008590 9.8e-38 162.2 470 30.0
arahy.Tifrunner.gnm1.ann1.ZH8P6D Arachis hypogaea HOM05D007068 ORTHO05D008590 1.3e-37 161.8 239 43.1
DCAR_014504 Daucus carota HOM05D007068 ORTHO05D008590 4.9e-37 159.8 467 33.6
Lsat_1_v5_gn_2_14700 Lactuca sativa HOM05D007068 ORTHO05D008590 1.2e-35 155.2 477 31.7
TPR.G1401 Trifolium pratense HOM05D007068 ORTHO05D008590 1.2e-35 155.2 474 29.3
ECA238G2622 Erigeron canadensis HOM05D007068 ORTHO05D008590 2.0e-35 154.5 247 41.3
Peaxi162Scf00683g00454 Petunia axillaris HOM05D007068 ORTHO05D008590 1.3e-34 151.8 209 44.5
Glyma.08G054400 Glycine max HOM05D007068 ORTHO05D008590 1.7e-34 151.4 459 30.7
Hma1.2p1_0669F.1_g200130 Hydrangea macrophylla HOM05D007068 ORTHO05D008590 2.3e-34 151.0 485 29.9
Phvul.002G330100 Phaseolus vulgaris HOM05D007068 ORTHO05D008590 1.5e-33 148.3 471 28.9
MBI13_g47078_MAGBIO Magnolia biondii HOM05D007068 ORTHO05D008590 9.5e-33 145.6 261 37.5
Hund10357 Selenicereus undatus HOM05D007068 ORTHO05D008590 1.3e-29 135.2 217 41.0
EL10Ac4g08480 Beta vulgaris HOM05D007068 ORTHO05D008590 3.7e-29 133.7 449 28.5
AUR62037972 Chenopodium quinoa HOM05D007068 ORTHO05D008590 1.8e-28 131.3 195 44.1
HPP92_002012 Vanilla planifolia HOM05D007068 ORTHO05D008590 3.2e-28 130.6 487 29.2
CDE02G3810 Ceratophyllum demersum HOM05D007068 ORTHO05D008590 2.7e-27 127.5 250 37.6
Ah.06g187490 Amaranthus hybridus HOM05D007068 ORTHO05D008590 1.1e-25 122.1 220 40.5
Ciclev10008793m.g Citrus clementina HOM05D007068 ORTHO05D008590 3.3e-25 120.6 87 66.7
VMungo0251G0567 Vigna mungo HOM05D007068 ORTHO05D008590 5.6e-25 119.8 249 34.5
Sopen03g037660 Solanum pennellii HOM05D007068 ORTHO05D008590 9.5e-25 119.0 187 41.2
SMO164G0186 Selaginella moellendorffii HOM05D007068 ORTHO05D008590 8.9e-23 112.5 174 37.9
Mapoly0060s0110 Marchantia polymorpha HOM05D007068 ORTHO05D008590 1.5e-22 111.7 201 34.8
ATR0618G302 Amborella trichopoda HOM05D007068 ORTHO05D008590 4.4e-22 110.2 140 42.9
SMO164G0105 Selaginella moellendorffii HOM05D020476 ORTHO05D008590 1.4e-20 105.1 172 36.0
HanXRQChr14g0431751 Helianthus annuus HOM05D007068 ORTHO05D008590 6.0e-19 99.8 79 57.0
SEGI_36605 Sequoiadendron giganteum HOM05D007068 ORTHO05D008590 6.0e-19 99.8 102 50.0
Sc10g0009180 Simmondsia chinensis HOM05D007068 ORTHO05D008590 1.0e-18 99.0 482 27.2
AagrBONN_evm.TU.Sc2ySwM_362.2609 Anthoceros agrestis HOM05D007068 ORTHO05D008590 1.9e-17 94.7 142 40.8
vmacro17572 Vaccinium macrocarpon HOM05D007068 ORTHO05D008590 6.2e-16 89.7 81 58.0
Zm00001eb304630 Zea mays HOM05D007068 ORTHO05D008590 3.1e-15 87.4 209 32.5
unitig_8.g4506 Utricularia gibba HOM05D007068 ORTHO05D008590 2.6e-14 84.3 226 33.2
FAN08G2700 Fragaria x ananassa HOM05D007068 ORTHO05D008590 2.9e-13 80.9 148 35.1
Pp3c3_22100 Physcomitrium patens HOM05D007068 ORTHO05D008590 1.4e-12 78.6 175 30.3
Pp3c3_22103 Physcomitrium patens HOM05D007068 ORTHO05D008590 1.4e-12 78.6 175 30.3
arahy.Tifrunner.gnm1.ann1.USF1F6 Arachis hypogaea HOM05D007068 ORTHO05D008590 1.6e-11 75.1 56 66.1
VMungo1215G1321 Vigna mungo HOM05D007068 ORTHO05D008590 1.1e-09 68.9 107 36.4


User provided reference genes

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