Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 2054.3 1053 100.0
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 2051.2 1053 99.9
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 0.0e+00 2030.4 1053 99.0
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1955.3 1054 95.4
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 0.0e+00 1918.7 1090 91.7
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1798.1 1062 88.8
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 0.0e+00 1730.3 1065 85.2
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 0.0e+00 1611.7 1077 78.9
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 0.0e+00 1602.0 1072 79.0
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 0.0e+00 1585.9 1063 78.6
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 0.0e+00 1577.4 1078 77.7
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 0.0e+00 1492.6 1015 78.5
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 0.0e+00 1325.5 1126 66.5
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 0.0e+00 1228.0 1098 63.0
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 0.0e+00 1198.3 1078 63.5
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 0.0e+00 1194.9 1078 63.1
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 0.0e+00 1190.6 1077 62.7
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 0.0e+00 1184.1 1090 62.1
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1175.2 1081 62.9
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 0.0e+00 1175.2 1081 62.9
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 0.0e+00 1168.7 1079 62.7
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1166.0 1081 62.7
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 0.0e+00 1165.6 1079 62.5
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 0.0e+00 1164.8 1078 62.2
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 0.0e+00 1157.5 1081 62.1
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 0.0e+00 1123.6 1076 60.7
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 2.2e-271 939.5 1112 49.6
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 3.8e-271 938.7 1130 49.6
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.4e-267 925.2 1125 49.4
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.0e-263 914.1 832 62.7
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 2.2e-263 912.9 1130 48.1
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 4.2e-262 908.7 1138 47.9
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 9.4e-262 907.5 1124 48.6
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 5.7e-259 898.3 1117 48.2
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 5.7e-259 898.3 1126 47.8
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 4.8e-258 895.2 1107 49.2
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 1.4e-257 893.6 1120 47.5
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.8e-257 893.3 1120 47.5
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.4e-257 892.9 1127 47.5
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 3.1e-257 892.5 1132 47.6
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 5.9e-256 888.3 1105 48.4
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.2e-255 886.3 1123 47.3
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 8.5e-255 884.4 1109 48.2
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 8.5e-255 884.4 1095 48.1
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.9e-254 883.2 1106 47.1
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 7.2e-254 881.3 1102 48.4
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 2.1e-253 879.8 1107 48.4
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 1.8e-252 876.7 1108 48.5
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 2.8e-250 869.4 1114 47.3
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 7.0e-249 864.8 1082 47.6
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 1.2e-248 864.0 1107 47.3
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 5.9e-248 861.7 1120 46.3
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.0e-247 860.9 1104 47.7
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 1.7e-247 860.1 1111 47.2
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 1.5e-246 857.1 1117 46.2
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.9e-246 856.7 1115 46.2
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 9.5e-246 854.4 1085 47.6
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 3.6e-245 852.4 1117 46.9
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 6.1e-245 851.7 1106 47.2
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 1.8e-244 850.1 1105 46.4
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 2.3e-244 849.7 1004 49.8
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 7.5e-243 844.7 1104 46.1
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 1.3e-242 844.0 1112 45.7
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.8e-241 840.1 998 50.4
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 4.1e-241 839.0 1081 47.6
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 5.4e-241 838.6 1105 45.5
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.6e-240 837.0 1088 47.2
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 5.9e-240 835.1 1120 45.3
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 2.3e-239 833.2 1141 45.4
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 4.3e-238 828.9 1034 48.2
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 4.3e-238 828.9 1129 45.0
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.4e-236 823.9 1130 44.9
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 8.9e-236 821.2 1119 44.4
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.2e-235 820.8 1119 44.2
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 2.9e-234 816.2 1141 45.0
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 1.4e-233 813.9 1083 46.3
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 1.2e-232 810.8 1183 42.7
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.3e-231 807.4 1095 44.8
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.6e-229 800.4 1111 43.9
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.4e-228 797.3 1130 45.1
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 2.3e-228 796.6 961 48.9
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 5.2e-228 795.4 1085 45.7
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 3.4e-227 792.7 1136 44.3
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.4e-227 792.3 968 49.7
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 2.9e-226 789.6 1114 43.3
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.4e-225 786.6 1186 42.5
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 3.2e-225 786.2 1144 43.8
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.1e-224 783.5 1120 43.2
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 3.0e-223 779.6 934 49.5
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 1.1e-222 777.7 1094 42.5
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 3.3e-222 776.2 1088 45.7
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 6.2e-221 771.9 1129 43.8
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 1.4e-220 770.8 1065 44.9
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 2.3e-220 770.0 1106 44.8
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 3.1e-220 769.6 1122 42.5
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 9.2e-217 758.1 1144 42.1
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 1.7e-215 753.8 1134 43.4
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 6.2e-213 745.3 1137 42.8
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 3.2e-209 733.0 1107 42.2
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 1.0e-207 728.0 1114 42.7
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 1.0e-207 728.0 1091 43.4
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 1.5e-206 724.2 1071 43.8
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 7.1e-201 705.3 877 48.1
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.1e-198 698.0 1126 40.8
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 3.6e-197 693.0 1103 40.6
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 2.0e-195 687.2 655 57.4
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.2e-193 679.9 657 57.1
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 7.4e-190 668.7 653 58.0
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.3e-189 667.9 1130 40.2
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 6.9e-188 662.1 1157 39.4
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 4.8e-181 639.4 503 65.2
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 8.2e-181 638.6 646 55.6
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 1.8e-180 637.5 791 47.4
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 5.0e-178 629.4 686 52.6
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 3.7e-173 613.2 448 67.6
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 9.0e-172 608.6 551 58.8
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.7e-170 604.4 721 49.5
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 6.1e-168 595.9 872 44.3
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 3.3e-166 590.1 644 54.5
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.7e-162 577.8 909 41.4
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 1.9e-153 547.7 648 49.1
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 5.5e-153 546.2 874 41.1
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 4.7e-152 543.1 1100 36.4
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 5.2e-151 539.7 886 40.6
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 6.5e-146 522.7 694 46.8
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 1.9e-137 494.6 948 38.2
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.5e-121 441.8 675 41.2
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 1.1e-116 425.6 683 39.8
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.1e-116 423.7 268 78.0
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.1e-116 423.7 268 78.0
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 1.0e-98 365.9 328 56.7
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.1e-87 329.3 425 47.1
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.3e-82 312.4 206 74.8
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.5e-73 282.3 704 33.9
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 9.0e-63 246.5 591 35.0
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.2e-62 246.1 591 34.9
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 1.5e-57 229.2 221 52.5
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 1.1e-49 203.0 142 72.5
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 6.7e-42 177.2 614 29.3
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 2.4e-39 168.7 192 51.6
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.9e-38 164.1 651 26.6
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 7.7e-38 163.7 92 84.8
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.0e-37 163.3 140 60.0
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.0e-37 163.3 785 26.2
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 1.5e-28 132.9 159 50.9
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 7.2e-28 130.6 87 71.3
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 3.5e-22 111.7 115 54.8
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 3.8e-21 108.2 382 28.0
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 2.6e-17 95.5 115 52.2
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 7.5e-17 94.0 111 51.4
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 1.7e-16 92.8 111 52.3
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 2.2e-16 92.4 161 33.5
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 4.9e-16 91.3 67 64.2
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 2.9e-13 82.0 361 27.1
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.6e-06 59.7 163 33.7


User provided reference genes

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