Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 9.2e-72 273.5 140 100.0
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 7.8e-71 270.4 140 99.3
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 3.9e-70 268.1 138 99.3
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 1.1e-69 266.5 137 99.3
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 1.1e-69 266.5 137 99.3
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 6.8e-67 257.3 132 99.2
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 3.7e-65 251.5 139 94.2
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 3.7e-65 251.5 139 94.2
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.6e-63 246.1 139 93.5
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 3.0e-54 215.3 139 78.4
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 3.0e-54 215.3 139 78.4
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 5.6e-53 211.1 140 77.9
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 9.5e-53 210.3 139 76.3
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 4.7e-52 208.0 139 77.7
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 6.2e-52 207.6 139 78.4
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 1.8e-51 206.1 139 77.7
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 1.2e-50 203.4 138 76.8
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 1.2e-50 203.4 138 76.8
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 7.8e-47 190.7 142 73.9
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 3.6e-44 181.8 140 69.3
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.4e-43 179.9 141 70.2
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 6.4e-41 171.0 141 68.1
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 4.6e-31 138.3 150 55.3
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.8e-30 136.3 149 53.0
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 5.1e-30 134.8 151 53.6
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 5.1e-30 134.8 151 53.6
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 5.1e-30 134.8 151 53.6
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 8.7e-30 134.0 151 55.0
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 2.5e-29 132.5 143 52.4
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 7.4e-29 131.0 151 52.3
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 1.3e-28 130.2 151 53.6
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 4.8e-28 128.3 157 52.9
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.8e-27 126.3 150 51.3
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 5.8e-26 121.3 150 48.7
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 1.3e-25 120.2 147 49.0
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 6.0e-15 84.7 153 34.0
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 2.5e-13 79.3 144 34.0
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 3.3e-13 79.0 153 34.6
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 4.3e-13 78.6 141 32.6
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 2.8e-12 75.9 159 32.7
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 6.3e-12 74.7 157 33.8
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 1.1e-11 73.9 153 34.6
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 1.4e-11 73.6 159 30.2
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 1.8e-11 73.2 151 34.4
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 2.4e-11 72.8 147 34.7
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 3.1e-11 72.4 159 34.6
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 3.1e-11 72.4 158 31.0
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 4.1e-11 72.0 160 30.6
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 4.1e-11 72.0 137 35.8
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 6.9e-11 71.2 153 33.3
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 9.0e-11 70.9 159 33.3
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 9.0e-11 70.9 162 34.0
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 1.2e-10 70.5 139 31.7
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 1.5e-10 70.1 158 33.5
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 1.5e-10 70.1 133 34.6
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 2.0e-10 69.7 149 32.2
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 2.6e-10 69.3 150 32.0
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 2.6e-10 69.3 149 34.2
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 3.4e-10 68.9 154 31.8
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 3.4e-10 68.9 148 32.4
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 4.5e-10 68.6 161 30.4
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 4.5e-10 68.6 158 33.5
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 5.9e-10 68.2 150 29.3
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 7.6e-10 67.8 150 32.0
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 7.6e-10 67.8 155 29.7
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 1.0e-09 67.4 134 35.1
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 1.0e-09 67.4 154 33.1
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 1.7e-09 66.6 153 30.7
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 2.2e-09 66.2 158 31.6
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 2.2e-09 66.2 141 34.0
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 2.9e-09 65.9 147 31.3
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 5.0e-09 65.1 149 32.2
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 5.0e-09 65.1 158 32.3
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 5.0e-09 65.1 147 32.0
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 6.5e-09 64.7 152 30.9
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.1e-08 63.9 151 34.4
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 1.1e-08 63.9 152 31.6
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.1e-08 63.9 139 31.7
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 1.1e-08 63.9 130 35.4
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 1.4e-08 63.5 155 31.6
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 1.4e-08 63.5 154 29.2
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 1.4e-08 63.5 152 32.2
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 1.4e-08 63.5 139 31.7
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.5e-08 62.8 162 29.6
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 3.2e-08 62.4 158 29.7
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 3.2e-08 62.4 147 30.6
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 4.2e-08 62.0 161 29.8
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 5.5e-08 61.6 148 31.8
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 7.2e-08 61.2 151 31.8
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 7.2e-08 61.2 147 30.6
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 7.2e-08 61.2 152 30.9
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 7.2e-08 61.2 139 30.9
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 9.3e-08 60.8 54 61.1
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 9.3e-08 60.8 161 29.2
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 9.3e-08 60.8 161 30.4
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 9.3e-08 60.8 144 30.6
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 1.2e-07 60.5 160 30.6
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 1.2e-07 60.5 139 30.9
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 1.2e-07 60.5 137 33.6
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 1.6e-07 60.1 138 29.7
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 1.6e-07 60.1 161 30.4
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 2.7e-07 59.3 164 28.7
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.7e-07 59.3 162 29.0
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 2.7e-07 59.3 144 29.9
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 4.6e-07 58.5 156 30.8
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 6.1e-07 58.2 159 28.9
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 6.1e-07 58.2 145 32.4
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 7.9e-07 57.8 153 33.3
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 7.9e-07 57.8 145 29.0
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 1.3e-06 57.0 133 32.3
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 1.8e-06 56.6 149 32.2
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 2.3e-06 56.2 53 60.4
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 3.0e-06 55.8 117 35.0
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 3.0e-06 55.8 158 30.4
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 3.0e-06 55.8 140 30.0
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 5.1e-06 55.1 45 64.4
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 5.1e-06 55.1 140 29.3
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 5.1e-06 55.1 148 35.1
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 6.7e-06 54.7 155 29.0
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 8.7e-06 54.3 137 28.5
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 8.7e-06 54.3 147 29.3
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 8.7e-06 54.3 144 28.5


User provided reference genes

Program Settings