Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43024 Brassica carinata HOM05D006118 ORTHO05D007750 1.1e-187 659.8 329 100.0
C06p02770 Brassica napus HOM05D006118 ORTHO05D007750 1.1e-187 659.8 329 100.0
BcaB07g33772 Brassica carinata HOM05D006118 ORTHO05D007750 5.3e-187 657.5 329 99.4
BolC6t35406H Brassica oleracea HOM05D006118 ORTHO05D007750 2.0e-186 655.6 329 98.5
A06p04570 Brassica napus HOM05D006118 ORTHO05D007750 7.2e-184 647.1 330 98.5
BraA06t23661Z Brassica rapa HOM05D006118 ORTHO05D007750 7.2e-184 647.1 330 98.5
Thhalv10011644m.g Eutrema salsugineum HOM05D006118 ORTHO05D007750 1.2e-183 646.4 329 97.3
Sp1g35230 Schrenkiella parvula HOM05D006118 ORTHO05D007750 1.2e-183 646.4 329 97.6
AT1G48270 Arabidopsis thaliana HOM05D006118 ORTHO05D007750 3.1e-179 631.7 329 94.8
CARHR037890 Cardamine hirsuta HOM05D006118 ORTHO05D007750 3.1e-179 631.7 329 93.9
Carub.0001s3740 Capsella rubella HOM05D006118 ORTHO05D007750 1.5e-178 629.4 329 94.5
AL1G54870 Arabidopsis lyrata HOM05D006118 ORTHO05D007750 2.0e-178 629.0 329 94.5
THA.LOC104824720 Tarenaya hassleriana HOM05D006118 ORTHO05D007750 4.2e-152 541.6 325 82.5
Cpa.g.sc146.16 Carica papaya HOM05D006118 ORTHO05D007750 2.6e-149 532.3 322 80.7
Ciclev10005468m.g Citrus clementina HOM05D006118 ORTHO05D007750 6.3e-148 527.7 327 79.5
PSO063G1448 Papaver somniferum HOM05D006118 ORTHO05D007750 4.5e-146 521.5 320 78.4
Atru.chr4.3167 Acer truncatum HOM05D006118 ORTHO05D007750 1.7e-145 519.6 319 80.3
Thecc.04G313700 Theobroma cacao HOM05D006118 ORTHO05D007750 3.8e-145 518.5 319 78.7
Gorai.005G073100 Gossypium raimondii HOM05D006118 ORTHO05D007750 1.5e-144 516.5 319 78.4
FvH4_2g30820 Fragaria vesca HOM05D006118 ORTHO05D007750 1.9e-144 516.2 329 76.6
FAN20G1786 Fragaria x ananassa HOM05D006118 ORTHO05D007750 1.9e-144 516.2 329 76.6
RcHm_v2.0_Chr6g0312021 Rosa chinensis HOM05D006118 ORTHO05D007750 2.5e-144 515.8 329 76.3
Gohir.A02G058900 Gossypium hirsutum HOM05D006118 ORTHO05D007750 3.3e-144 515.4 319 78.4
PSO421G0086 Papaver somniferum HOM05D006118 ORTHO05D007750 4.3e-144 515.0 320 77.8
Aa31LG10G5490 Aethionema arabicum HOM05D006118 ORTHO05D007750 7.3e-144 514.2 328 79.9
Gohir.D02G064600 Gossypium hirsutum HOM05D006118 ORTHO05D007750 1.2e-143 513.5 319 78.1
CiPaw.16G067300 Carya illinoinensis HOM05D006118 ORTHO05D007750 2.1e-143 512.7 321 77.9
FAN15G2451 Fragaria x ananassa HOM05D006118 ORTHO05D007750 2.1e-143 512.7 329 76.0
FAN27G1493 Fragaria x ananassa HOM05D006118 ORTHO05D007750 6.1e-143 511.1 329 76.0
MD08G1073200 Malus domestica HOM05D006118 ORTHO05D007750 3.0e-142 508.8 329 74.8
Phvul.001G044800 Phaseolus vulgaris HOM05D006118 ORTHO05D007750 4.0e-142 508.4 327 76.5
CANSAT25G1353 Cannabis sativa HOM05D006118 ORTHO05D007750 8.9e-142 507.3 323 77.1
Ca_13095_v3 Cicer arietinum L. HOM05D006118 ORTHO05D007750 1.2e-141 506.9 329 75.7
Prupe.1G402500 Prunus persica HOM05D006118 ORTHO05D007750 1.2e-141 506.9 329 75.1
arahy.Tifrunner.gnm1.ann1.ZI0SGT Arachis hypogaea HOM05D006118 ORTHO05D007750 5.7e-141 504.6 327 75.5
Duzib151G0955 Durio zibethinus HOM05D006118 ORTHO05D007750 1.3e-140 503.4 290 82.1
MD15G1048100 Malus domestica HOM05D006118 ORTHO05D007750 1.7e-140 503.1 321 75.7
TAR624G0180 Trochodendron aralioides HOM05D006118 ORTHO05D007750 2.9e-140 502.3 327 76.5
Migut.E01785 Erythranthe guttata HOM05D006118 ORTHO05D007750 6.4e-140 501.1 332 75.0
Glyma.17G219300 Glycine max HOM05D006118 ORTHO05D007750 1.4e-139 500.0 327 74.9
Lj5g0024511 Lotus japonicus HOM05D006118 ORTHO05D007750 1.4e-139 500.0 329 74.5
GSVIVG01035487001 Vitis vinifera HOM05D006118 ORTHO05D007750 1.2e-138 496.9 324 75.6
arahy.Tifrunner.gnm1.ann1.Z643MN Arachis hypogaea HOM05D006118 ORTHO05D007750 1.6e-138 496.5 337 73.6
MELO3C016921.2 Cucumis melo HOM05D006118 ORTHO05D007750 1.0e-137 493.8 327 73.7
Cc08_g01010 Coffea canephora HOM05D006118 ORTHO05D007750 1.3e-137 493.4 337 73.3
CsaV3_4G036130 Cucumis sativus L. HOM05D006118 ORTHO05D007750 1.7e-137 493.0 327 73.7
Eucgr.C00739 Eucalyptus grandis HOM05D006118 ORTHO05D007750 2.5e-136 489.2 331 74.3
ClCG05G015850 Citrullus lanatus HOM05D006118 ORTHO05D007750 5.6e-136 488.0 327 72.8
Hma1.2p1_0641F.1_g194200 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 7.3e-136 487.6 300 79.3
HanXRQChr09g0261891 Helianthus annuus HOM05D006118 ORTHO05D007750 2.1e-135 486.1 333 71.8
Solyc08g061260.4 Solanum lycopersicum HOM05D006118 ORTHO05D007750 3.1e-134 482.3 332 73.2
Sopen08g016640 Solanum pennellii HOM05D006118 ORTHO05D007750 3.1e-134 482.3 332 73.2
PGSC0003DMG402012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 5.2e-134 481.5 332 72.9
MSTRG.14088 Avicennia marina HOM05D006118 ORTHO05D007750 8.9e-134 480.7 324 73.8
Sabra08G0153100 Salix brachista HOM05D006118 ORTHO05D007750 1.2e-133 480.3 330 74.2
Lalb_Chr24g0393681 Lupinus albus HOM05D006118 ORTHO05D007750 1.5e-133 479.9 317 74.8
Aqoxy7G01030 Aquilegia oxysepala HOM05D006118 ORTHO05D007750 2.6e-133 479.2 329 72.6
Sed0026686 Sechium edule HOM05D006118 ORTHO05D007750 4.4e-133 478.4 326 70.9
SGA_v2.0_scaffold163G37995 Striga asiatica HOM05D006118 ORTHO05D007750 4.4e-133 478.4 338 71.9
Manes.03G212200 Manihot esculenta HOM05D006118 ORTHO05D007750 5.8e-133 478.0 329 73.3
VMungo0647G1968 Vigna mungo HOM05D006118 ORTHO05D007750 1.9e-131 473.0 284 80.3
Lsat_1_v5_gn_8_70541 Lactuca sativa HOM05D006118 ORTHO05D007750 5.4e-131 471.5 333 70.3
Glyma.14G107200 Glycine max HOM05D006118 ORTHO05D007750 1.6e-130 469.9 284 79.2
DCAR_003726 Daucus carota HOM05D006118 ORTHO05D007750 2.7e-130 469.2 342 68.7
PGR142G4277 Punica granatum HOM05D006118 ORTHO05D007750 2.7e-130 469.2 280 81.4
CSS0045297 Camellia sinensis var. sinensis HOM05D006118 ORTHO05D007750 3.3e-128 462.2 288 78.1
Rhsim13G0216900 Rhododendron simsii HOM05D006118 ORTHO05D007750 5.6e-128 461.5 333 70.3
Medtr1g015010 Medicago truncatula HOM05D006118 ORTHO05D007750 5.8e-125 451.4 329 69.9
Sc06g0000090 Simmondsia chinensis HOM05D006118 ORTHO05D007750 1.1e-123 447.2 322 69.3
SalBow1G5335 Salvia bowleyana HOM05D006118 ORTHO05D007750 1.9e-120 436.4 435 56.6
TWI53G1421 Tripterygium wilfordii HOM05D006118 ORTHO05D007750 1.2e-119 433.7 322 69.9
Nitab4.5_0001576g0100 Nicotiana tabacum HOM05D006118 ORTHO05D007750 3.6e-119 432.2 317 70.7
Psat6g023080 Pisum sativum HOM05D006118 ORTHO05D007750 3.6e-119 432.2 285 76.1
vmacro04115 Vaccinium macrocarpon HOM05D006118 ORTHO05D007750 1.2e-117 427.2 397 57.7
CDE06G0461 Ceratophyllum demersum HOM05D006118 ORTHO05D007750 7.6e-117 424.5 286 71.7
Actinidia01325 Actinidia chinensis HOM05D006118 ORTHO05D007750 2.9e-116 422.5 271 76.8
Os06g0199800 Oryza sativa ssp. japonica HOM05D006118 ORTHO05D007750 1.9e-115 419.9 302 66.9
FAN24G3410 Fragaria x ananassa HOM05D006118 ORTHO05D007750 9.2e-115 417.5 263 74.9
COL.COLO4_34509 Corchorus olitorius HOM05D006118 ORTHO05D007750 1.2e-114 417.2 341 63.9
Dinv41849 Davidia involucrata HOM05D006118 ORTHO05D007750 3.5e-114 415.6 270 74.4
ECA236G0212 Erigeron canadensis HOM05D006118 ORTHO05D007750 1.1e-112 410.6 272 73.5
TPR.G38901 Trifolium pratense HOM05D006118 ORTHO05D007750 4.3e-112 408.7 261 76.2
Oeu036787.2 Olea europaea HOM05D006118 ORTHO05D007750 2.4e-110 402.9 304 67.1
Hma1.2p1_0641F.1_g194210 Hydrangea macrophylla HOM05D006118 ORTHO05D007750 1.5e-109 400.2 242 78.9
AagrBONN_evm.TU.Sc2ySwM_228.1339 Anthoceros agrestis HOM05D006118 ORTHO05D007750 3.4e-109 399.1 318 61.9
Potri.008G206000 Populus trichocarpa HOM05D006118 ORTHO05D007750 7.6e-109 397.9 293 68.3
AUR62020280 Chenopodium quinoa HOM05D006118 ORTHO05D007750 1.9e-104 383.3 307 67.4
Ah.12g061330 Amaranthus hybridus HOM05D006118 ORTHO05D007750 2.8e-103 379.4 324 61.7
Mapoly0073s0070 Marchantia polymorpha HOM05D006118 ORTHO05D007750 8.1e-103 377.9 288 62.2
Peaxi162Scf00486g00116 Petunia axillaris HOM05D006118 ORTHO05D007750 1.8e-102 376.7 329 61.1
Oeu024208.1 Olea europaea HOM05D006118 ORTHO05D007750 4.9e-100 368.6 250 72.0
Pp3c15_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 3.2e-99 365.9 318 56.0
Pp3c9_15980 Physcomitrium patens HOM05D006118 ORTHO05D007750 9.3e-99 364.4 289 60.2
EL10Ac2g02406 Beta vulgaris HOM05D006118 ORTHO05D007750 1.3e-97 360.5 325 59.7
Hund25545 Selenicereus undatus HOM05D006118 ORTHO05D007750 6.7e-97 358.2 286 66.1
SMO119G0499 Selaginella moellendorffii HOM05D006118 ORTHO05D007750 1.8e-94 350.1 261 64.8
Haze_18321 Corylus avellana HOM05D006118 ORTHO05D007750 4.5e-93 345.5 651 37.3
BcaB01g03835 Brassica carinata HOM05D006118 ORTHO05D007750 9.3e-91 337.8 193 86.5
AUR62037725 Chenopodium quinoa HOM05D006118 ORTHO05D007750 4.5e-85 318.9 320 56.2
ATR0598G044 Amborella trichopoda HOM05D006118 ORTHO05D007750 1.3e-84 317.4 206 74.8
HPP92_016236 Vanilla planifolia HOM05D006118 ORTHO05D007750 1.8e-81 307.0 296 55.1
BcaB08g36375 Brassica carinata HOM05D006118 ORTHO05D007750 2.5e-80 303.1 193 80.8
Lj7A209G43 Lonicera japonica HOM05D006118 ORTHO05D007750 8.5e-76 288.1 240 64.6
arahy.Tifrunner.gnm1.ann1.C1NZN8 Arachis hypogaea HOM05D006118 ORTHO05D007750 1.0e-73 281.2 312 53.5
Zm00001eb278600 Zea mays HOM05D006118 ORTHO05D007750 3.0e-73 279.6 199 65.3
CBR_g36835 Chara braunii HOM05D006118 ORTHO05D007750 4.1e-70 269.2 225 58.2
BcaB01g01553 Brassica carinata HOM05D006118 ORTHO05D007750 1.6e-66 257.3 145 85.5
PGSC0003DMG401012996 Solanum tuberosum HOM05D006118 ORTHO05D007750 1.6e-66 257.3 164 77.4
BcaB07g32513 Brassica carinata HOM05D006118 ORTHO05D007750 1.0e-65 254.6 178 69.1
MD15G1048300 Malus domestica HOM05D006118 ORTHO05D007750 6.3e-63 245.4 245 56.3
unitig_8.g4842 Utricularia gibba HOM05D006118 ORTHO05D007750 4.7e-58 229.2 164 67.1
Nitab4.5_0009849g0030 Nicotiana tabacum HOM05D006118 ORTHO05D007750 8.8e-57 224.9 329 44.7
arahy.Tifrunner.gnm1.ann1.K6H74S Arachis hypogaea HOM05D006118 ORTHO05D007750 2.6e-56 223.4 170 65.3
arahy.Tifrunner.gnm1.ann1.M0UG3B Arachis hypogaea HOM05D005235 ORTHO05D006938 1.6e-42 177.6 131 67.9
Lalb_Chr23g0268011 Lupinus albus HOM05D006118 ORTHO05D007750 2.0e-40 170.6 101 78.2
Lj7A209G42 Lonicera japonica HOM05D006118 ORTHO05D007750 7.7e-37 158.7 90 81.1
PRCOL_00004868 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 6.1e-34 149.1 272 36.8
PRCOL_00005697 Prasinoderma coloniale HOM05D006118 ORTHO05D007750 1.3e-31 141.4 272 31.2
ATR0684G160 Amborella trichopoda HOM05D006118 ORTHO05D007750 3.5e-29 133.3 92 67.4
SEGI_23264 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 3.1e-25 120.2 80 71.2
MCO03G156 Micromonas commoda HOM05D006118 ORTHO05D007750 5.0e-20 102.8 357 25.5
BcaB01g01552 Brassica carinata HOM05D006118 ORTHO05D007750 1.5e-16 91.3 53 90.6
Lalb_Chr23g0268021 Lupinus albus HOM05D006118 ORTHO05D007750 3.6e-10 70.1 46 73.9
SEGI_18851 Sequoiadendron giganteum HOM05D006118 ORTHO05D007750 1.9e-06 57.8 79 39.2
BolC6t35198H Brassica oleracea HOM05D006118 ORTHO05D007750 4.1e-06 56.6 41 80.5


User provided reference genes

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