Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g43014 Brassica carinata HOM05D007246 ORTHO05D009066 4.9e-55 217.6 115 100.0
C06p02690 Brassica napus HOM05D007246 ORTHO05D009066 2.7e-53 211.8 115 97.4
BolC6t35395H Brassica oleracea HOM05D007246 ORTHO05D009066 2.7e-53 211.8 115 97.4
A06p04630 Brassica napus HOM05D007246 ORTHO05D009066 8.4e-47 190.3 121 86.8
BraA06t23667Z Brassica rapa HOM05D007246 ORTHO05D009066 7.1e-46 187.2 120 89.2
Sp1g35150 Schrenkiella parvula HOM05D007246 ORTHO05D009066 9.6e-43 176.8 119 82.4
BcaC06g31695 Brassica carinata HOM05D007246 ORTHO05D009066 3.1e-41 171.8 119 81.5
Thhalv10011824m.g Eutrema salsugineum HOM05D007246 ORTHO05D009066 2.0e-40 169.1 119 79.0
A06p47840 Brassica napus HOM05D007246 ORTHO05D009066 1.3e-39 166.4 119 78.2
BraA06t27654Z Brassica rapa HOM05D007246 ORTHO05D009066 1.3e-39 166.4 119 78.2
Carub.0001s3729 Capsella rubella HOM05D007246 ORTHO05D009066 2.2e-39 165.6 120 78.3
BcaC06g34651 Brassica carinata HOM05D007246 ORTHO05D009066 1.9e-38 162.5 119 79.8
C07p26120 Brassica napus HOM05D007246 ORTHO05D009066 1.9e-38 162.5 119 79.8
Sp1g35170 Schrenkiella parvula HOM05D007246 ORTHO05D009066 4.2e-38 161.4 119 79.0
AT1G48200 Arabidopsis thaliana HOM05D007246 ORTHO05D009066 9.3e-38 160.2 120 75.0
BolC7t43138H Brassica oleracea HOM05D007246 ORTHO05D009066 9.3e-38 160.2 112 80.4
AL1G54790 Arabidopsis lyrata HOM05D007246 ORTHO05D009066 2.1e-37 159.1 113 77.0
Aa31LG10G5550 Aethionema arabicum HOM05D007246 ORTHO05D009066 3.9e-36 154.8 119 72.3
Carub.0007s3396 Capsella rubella HOM05D007246 ORTHO05D009066 9.3e-30 133.7 117 68.4
BcaB07g33783 Brassica carinata HOM05D007246 ORTHO05D009066 1.3e-28 129.8 107 72.9
CARHR037830 Cardamine hirsuta HOM05D007246 ORTHO05D009066 1.8e-25 119.4 75 78.7
Lj5g0017876 Lotus japonicus HOM05D007246 ORTHO05D009066 2.7e-21 105.5 117 50.4
Ciclev10002868m.g Citrus clementina HOM05D007246 ORTHO05D009066 5.1e-20 101.3 118 47.5
Duzib093G0837 Durio zibethinus HOM05D007246 ORTHO05D009066 6.7e-20 100.9 108 52.8
BcaB07g33731 Brassica carinata HOM05D007246 ORTHO05D009066 3.3e-19 98.6 77 75.3
BcaB07g33733 Brassica carinata HOM05D007246 ORTHO05D009066 3.3e-19 98.6 77 75.3
Hma1.2p1_0186F.1_g081760 Hydrangea macrophylla HOM05D007246 ORTHO05D009066 7.4e-19 97.4 117 48.7
Atru.chr10.1388 Acer truncatum HOM05D007246 ORTHO05D009066 9.7e-19 97.1 109 48.6
CsaV3_4G028300 Cucumis sativus L. HOM05D007246 ORTHO05D009066 9.7e-19 97.1 116 47.4
Manes.18G076600 Manihot esculenta HOM05D007246 ORTHO05D009066 9.7e-19 97.1 116 50.9
ClCG11G015710 Citrullus lanatus HOM05D007246 ORTHO05D009066 1.3e-18 96.7 116 48.3
Potri.002G084400 Populus trichocarpa HOM05D007246 ORTHO05D009066 1.6e-18 96.3 114 48.2
MELO3C010475.2 Cucumis melo HOM05D007246 ORTHO05D009066 2.2e-18 95.9 117 45.3
Glyma.20G199500 Glycine max HOM05D007246 ORTHO05D009066 2.2e-18 95.9 117 47.0
THA.LOC104821809 Tarenaya hassleriana HOM05D007246 ORTHO05D009066 2.2e-18 95.9 119 47.1
arahy.Tifrunner.gnm1.ann1.B2XLC5 Arachis hypogaea HOM05D007246 ORTHO05D009066 2.8e-18 95.5 115 47.0
Gohir.A06G044000 Gossypium hirsutum HOM05D007246 ORTHO05D009066 2.8e-18 95.5 102 53.9
Gorai.010G050000 Gossypium raimondii HOM05D007246 ORTHO05D009066 4.8e-18 94.7 93 55.9
QL09p034990 Quercus lobata HOM05D007246 ORTHO05D009066 4.8e-18 94.7 115 47.8
arahy.Tifrunner.gnm1.ann1.HQB0BQ Arachis hypogaea HOM05D007246 ORTHO05D009066 6.3e-18 94.4 115 46.1
CANSAT25G3837 Cannabis sativa HOM05D007246 ORTHO05D009066 6.3e-18 94.4 117 46.2
Prupe.1G499600 Prunus persica HOM05D007246 ORTHO05D009066 1.1e-17 93.6 117 49.6
Rhsim03G0059000 Rhododendron simsii HOM05D007246 ORTHO05D009066 1.1e-17 93.6 117 47.0
Thecc.08G124300 Theobroma cacao HOM05D007246 ORTHO05D009066 1.1e-17 93.6 117 47.9
Oeu040422.1 Olea europaea HOM05D007246 ORTHO05D009066 1.4e-17 93.2 118 49.2
Sed0023701 Sechium edule HOM05D007246 ORTHO05D009066 2.4e-17 92.4 117 47.0
CiPaw.05G222500 Carya illinoinensis HOM05D007246 ORTHO05D009066 3.1e-17 92.0 115 46.1
Phvul.L001676 Phaseolus vulgaris HOM05D007246 ORTHO05D009066 3.1e-17 92.0 115 46.1
MD08G1164500 Malus domestica HOM05D007246 ORTHO05D009066 5.3e-17 91.3 108 50.0
Actinidia02617 Actinidia chinensis HOM05D007246 ORTHO05D009066 6.9e-17 90.9 117 45.3
Cfa016011 Carpinus fangiana HOM05D007246 ORTHO05D009066 6.9e-17 90.9 115 47.8
Lalb_Chr06g0169561 Lupinus albus HOM05D007246 ORTHO05D009066 9.0e-17 90.5 117 47.0
Haze_00452 Corylus avellana HOM05D007246 ORTHO05D009066 1.2e-16 90.1 115 47.0
Gohir.D06G044900 Gossypium hirsutum HOM05D007246 ORTHO05D009066 1.2e-16 90.1 94 55.3
TAR381G0547 Trochodendron aralioides HOM05D007246 ORTHO05D009066 2.0e-16 89.4 98 55.1
TPR.G18552 Trifolium pratense HOM05D007246 ORTHO05D009066 3.4e-16 88.6 116 44.0
FvH4_2g26810 Fragaria vesca HOM05D007246 ORTHO05D009066 7.7e-16 87.4 92 50.0
Psat6g131200 Pisum sativum HOM05D007246 ORTHO05D009066 7.7e-16 87.4 116 44.8
RcHm_v2.0_Chr6g0295671 Rosa chinensis HOM05D007246 ORTHO05D009066 7.7e-16 87.4 107 48.6
PGSC0003DMG400000898 Solanum tuberosum HOM05D007246 ORTHO05D009066 7.7e-16 87.4 109 47.7
Cpa.g.sc36.60 Carica papaya HOM05D007246 ORTHO05D009066 1.0e-15 87.0 100 51.0
Sopen11g007630 Solanum pennellii HOM05D007246 ORTHO05D009066 1.0e-15 87.0 102 49.0
Solyc11g012890.2 Solanum lycopersicum HOM05D007246 ORTHO05D009066 1.3e-15 86.7 102 49.0
Aqoxy6G00205 Aquilegia oxysepala HOM05D007246 ORTHO05D009066 1.7e-15 86.3 109 47.7
FAN15G0425 Fragaria x ananassa HOM05D007246 ORTHO05D009066 1.7e-15 86.3 92 51.1
VMungo0720G2760 Vigna mungo HOM05D003112 ORTHO05D003660 3.8e-15 85.1 97 47.4
Ca_09797_v3 Cicer arietinum L. HOM05D007246 ORTHO05D009066 5.0e-15 84.7 117 42.7
Sc25g0000500 Simmondsia chinensis HOM05D007246 ORTHO05D009066 6.5e-15 84.3 101 45.5
Medtr1g073190 Medicago truncatula HOM05D007246 ORTHO05D009066 8.5e-15 84.0 117 41.9
GSVIVG01008877001 Vitis vinifera HOM05D007246 ORTHO05D009066 8.5e-15 84.0 113 45.1
PGR142G2996 Punica granatum HOM05D007246 ORTHO05D009066 1.1e-14 83.6 117 42.7
CSS0048322 Camellia sinensis var. sinensis HOM05D007246 ORTHO05D009066 1.9e-14 82.8 118 44.1
COL.COLO4_35932 Corchorus olitorius HOM05D007246 ORTHO05D009066 2.5e-14 82.4 118 43.2
FAN27G1944 Fragaria x ananassa HOM05D007246 ORTHO05D009066 2.5e-14 82.4 83 51.8
TWI36G0927 Tripterygium wilfordii HOM05D007246 ORTHO05D009066 2.5e-14 82.4 116 45.7
Eucgr.F03786 Eucalyptus grandis HOM05D007246 ORTHO05D009066 3.2e-14 82.0 116 42.2
Peaxi162Scf00537g00034 Petunia axillaris HOM05D007246 ORTHO05D009066 4.2e-14 81.6 116 43.1
Nn5g28257 Nelumbo nucifera HOM05D007246 ORTHO05D009066 5.5e-14 81.3 95 50.5
EL10Ac1g01002 Beta vulgaris HOM05D007246 ORTHO05D009066 7.2e-14 80.9 110 42.7
Lsat_1_v5_gn_5_179321 Lactuca sativa HOM05D007246 ORTHO05D009066 7.2e-14 80.9 104 44.2
DCAR_003548 Daucus carota HOM05D007246 ORTHO05D009066 1.2e-13 80.1 92 45.7
Ah.05g171160 Amaranthus hybridus HOM05D007246 ORTHO05D009066 3.6e-13 78.6 88 50.0
Migut.C01135 Erythranthe guttata HOM05D007246 ORTHO05D009066 3.6e-13 78.6 120 40.8
Nitab4.5_0001803g0080 Nicotiana tabacum HOM05D007246 ORTHO05D009066 4.6e-13 78.2 113 40.7
HanXRQChr13g0407621 Helianthus annuus HOM05D007246 ORTHO05D009066 7.9e-13 77.4 118 41.5
Hund17288 Selenicereus undatus HOM05D007246 ORTHO05D009066 1.4e-12 76.6 95 45.3
Nitab4.5_0001273g0060 Nicotiana tabacum HOM05D007246 ORTHO05D009066 3.0e-12 75.5 104 44.2
SGA_v2.0_scaffold24G10465 Striga asiatica HOM05D007246 ORTHO05D009066 3.9e-12 75.1 85 45.9
MSTRG.1448 Avicennia marina HOM05D007246 ORTHO05D009066 5.1e-12 74.7 86 46.5
SalBow7G0738 Salvia bowleyana HOM05D007246 ORTHO05D009066 7.4e-11 70.9 88 43.2
PSO170G1503 Papaver somniferum HOM05D007246 ORTHO05D009066 9.7e-11 70.5 120 40.0
ECA248G1302 Erigeron canadensis HOM05D007246 ORTHO05D009066 2.2e-10 69.3 116 39.7
PSO528G0221 Papaver somniferum HOM05D007246 ORTHO05D009066 2.2e-10 69.3 120 40.0
unitig_37.g12972 Utricularia gibba HOM05D007246 ORTHO05D009066 1.4e-09 66.6 105 40.0
CDE06G1719 Ceratophyllum demersum HOM05D007246 ORTHO05D009066 6.9e-09 64.3 107 40.2
MBI01_g01255_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 1.2e-08 63.5 81 43.2
MBI01_g01253_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.0e-08 62.8 81 43.2
MBI01_g01252_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 2.6e-08 62.4 81 43.2
MBI01_g01254_MAGBIO Magnolia biondii HOM05D007246 ORTHO05D009066 4.5e-08 61.6 103 40.8
ATR0716G022 Amborella trichopoda HOM05D007246 ORTHO05D009066 3.8e-07 58.5 78 44.9
FAN20G0163 Fragaria x ananassa HOM05D007246 ORTHO05D009066 5.5e-06 54.7 60 50.0


User provided reference genes

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