Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 8.8e-104 380.2 178 100.0
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 1.5e-98 362.8 194 89.7
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 4.3e-98 361.3 194 89.7
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 9.5e-90 333.6 199 82.4
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 1.3e-86 323.2 199 80.4
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.9e-85 319.3 194 79.4
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 1.9e-85 319.3 194 79.4
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 8.3e-78 293.9 194 72.7
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 2.7e-76 288.9 195 72.8
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 7.6e-71 270.8 195 67.7
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 3.2e-69 265.4 196 68.4
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 4.1e-69 265.0 195 68.2
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 2.1e-57 226.1 190 62.1
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 6.9e-48 194.5 198 54.5
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 3.8e-30 135.6 198 41.9
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 6.5e-30 134.8 201 42.3
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 1.1e-29 134.0 201 42.3
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 1.9e-29 133.3 197 42.1
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 1.2e-28 130.6 116 56.9
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 1.3e-27 127.1 197 38.1
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 1.1e-26 124.0 103 58.3
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 1.9e-26 123.2 113 52.2
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 5.7e-26 121.7 103 59.2
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 5.7e-26 121.7 103 59.2
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 5.7e-26 121.7 196 40.8
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 3.7e-25 119.0 112 56.2
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 1.1e-24 117.5 202 38.1
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 3.1e-24 115.9 183 38.3
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 3.1e-24 115.9 183 38.3
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 4.1e-24 115.5 183 38.8
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 5.3e-24 115.2 195 34.4
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 1.2e-23 114.0 196 38.3
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 1.2e-23 114.0 196 37.2
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 3.4e-23 112.5 95 55.8
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 4.5e-23 112.1 203 36.0
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 7.7e-23 111.3 155 41.9
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 6.5e-22 108.2 107 48.6
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 6.5e-22 108.2 200 38.0
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 8.5e-22 107.8 123 48.8
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 1.4e-21 107.1 113 50.4
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 1.4e-21 107.1 191 35.1
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 1.9e-21 106.7 113 47.8
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.9e-21 106.7 188 36.7
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 3.2e-21 105.9 203 35.0
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 3.2e-21 105.9 109 52.3
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 4.2e-21 105.5 120 50.0
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 5.5e-21 105.1 191 38.2
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 7.2e-21 104.8 192 36.5
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 9.4e-21 104.4 118 46.6
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 1.2e-20 104.0 108 51.9
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 2.1e-20 103.2 207 34.8
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 2.1e-20 103.2 118 48.3
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 2.1e-20 103.2 101 55.4
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 2.1e-20 103.2 101 55.4
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 2.1e-20 103.2 107 52.3
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 2.7e-20 102.8 124 45.2
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 2.7e-20 102.8 190 37.9
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 2.7e-20 102.8 100 55.0
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 2.7e-20 102.8 100 55.0
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 4.7e-20 102.1 120 46.7
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 1.4e-19 100.5 106 47.2
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 1.4e-19 100.5 111 45.9
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 1.8e-19 100.1 111 45.9
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 2.3e-19 99.8 108 45.4
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 3.9e-19 99.0 91 53.8
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 6.7e-19 98.2 106 49.1
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 1.5e-18 97.1 108 44.4
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 1.5e-18 97.1 93 53.8
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 2.0e-18 96.7 91 52.7
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 2.6e-18 96.3 100 51.0
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 4.4e-18 95.5 90 56.7
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 5.7e-18 95.1 91 52.7
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 5.7e-18 95.1 92 54.3
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 5.7e-18 95.1 99 50.5
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 7.4e-18 94.7 112 46.4
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 1.3e-17 94.0 199 32.7
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 2.2e-17 93.2 198 33.3
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 3.7e-17 92.4 113 46.9
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 3.7e-17 92.4 197 30.5
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 1.4e-16 90.5 124 39.5
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 1.8e-16 90.1 109 45.0
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 2.4e-16 89.7 190 33.2
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 3.1e-16 89.4 89 55.1
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 3.1e-16 89.4 78 56.4
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 5.3e-16 88.6 188 33.0
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 6.9e-16 88.2 111 45.9
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 9.1e-16 87.8 107 48.6
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 9.1e-16 87.8 187 32.6
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 1.2e-15 87.4 99 46.5
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 2.0e-15 86.7 82 48.8
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 4.5e-15 85.5 108 47.2
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 5.9e-15 85.1 193 33.2
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 7.7e-15 84.7 105 46.7
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 1.3e-14 84.0 102 45.1
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 1.3e-14 84.0 102 44.1
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 2.9e-14 82.8 50 64.0
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 1.9e-13 80.1 105 42.9
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 1.9e-13 80.1 105 44.8
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 2.5e-13 79.7 101 42.6
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 2.5e-13 79.7 95 47.4
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 2.5e-13 79.7 99 47.5
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 2.5e-13 79.7 183 31.1
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 3.2e-13 79.3 95 45.3
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 3.2e-13 79.3 95 45.3
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 3.2e-13 79.3 96 43.8
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 4.2e-13 79.0 182 29.1
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 4.2e-13 79.0 104 42.3
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 9.4e-13 77.8 97 45.4
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 2.7e-12 76.3 112 40.2
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 3.6e-12 75.9 104 43.3
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 4.7e-12 75.5 76 46.1
BolC6t35322H Brassica oleracea HOM05D006157 ORTHO05D007826 6.1e-12 75.1 34 97.1
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 1.5e-10 70.5 107 37.4
C08p06300 Brassica napus HOM05D006157 ORTHO05D007826 5.7e-10 68.6 53 64.2
BolC8t47476H Brassica oleracea HOM05D006157 ORTHO05D007826 5.7e-10 68.6 53 64.2
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 5.3e-08 62.0 77 37.7
HPP92_027520 Vanilla planifolia HOM05D006157 ORTHO05D007826 1.6e-07 60.5 80 36.2
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 4.5e-07 58.9 77 37.7
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 2.2e-06 56.6 85 41.2


User provided reference genes

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