Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 0.0e+00 1504.6 797 100.0
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 4.7e-187 659.1 380 96.3
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 5.4e-183 645.6 380 95.3
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 2.6e-145 520.4 406 79.8
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.0e-144 518.5 406 79.6
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 1.6e-142 511.1 409 76.0
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.1e-110 404.4 411 64.5
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 3.6e-110 403.7 411 64.5
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 9.8e-100 369.0 421 59.4
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 8.0e-94 349.4 402 59.5
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 9.9e-84 315.8 435 53.1
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 6.2e-78 296.6 465 47.5
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 9.2e-74 282.7 452 46.5
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.1e-73 281.6 418 48.3
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.7e-73 281.2 436 47.2
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.9e-71 275.0 367 51.5
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 2.1e-70 271.6 442 46.4
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 3.1e-69 267.7 443 44.5
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 5.8e-68 263.5 439 44.9
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 1.7e-64 251.9 436 42.4
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 1.9e-63 248.4 430 42.1
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.1e-62 245.0 428 43.0
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 5.3e-61 240.4 427 41.0
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 1.2e-60 239.2 430 42.6
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.5e-60 238.8 445 40.9
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.6e-60 236.5 423 40.9
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 1.3e-59 235.7 419 41.5
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 2.9e-59 234.6 422 43.1
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 3.8e-59 234.2 445 39.3
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 4.2e-58 230.7 427 42.6
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 4.2e-58 230.7 415 41.0
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.2e-57 229.2 425 42.4
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 3.5e-57 227.6 417 42.0
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 4.6e-57 227.3 429 40.8
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.3e-56 225.7 428 40.7
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 3.9e-56 224.2 422 42.2
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.9e-56 224.2 425 40.2
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 5.1e-56 223.8 417 40.5
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.1e-55 222.6 415 40.2
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.1e-55 222.6 436 40.1
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.5e-55 222.2 440 39.3
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 2.5e-55 221.5 451 39.0
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.3e-55 220.7 440 39.3
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 5.6e-55 220.3 420 41.0
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 7.4e-55 219.9 427 38.9
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 2.8e-54 218.0 419 39.6
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 4.8e-54 217.2 426 40.8
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 4.8e-54 217.2 446 37.7
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 8.1e-54 216.5 419 38.4
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 8.1e-54 216.5 427 39.3
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 8.1e-54 216.5 423 39.5
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 1.1e-53 216.1 447 39.1
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 1.4e-53 215.7 468 37.8
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 1.4e-53 215.7 451 38.1
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.4e-53 214.9 418 41.4
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 4.0e-53 214.2 413 38.7
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.2e-52 212.6 417 40.0
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.5e-52 212.2 425 39.5
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 2.6e-52 211.5 450 38.7
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 5.8e-52 210.3 435 37.7
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 5.8e-52 210.3 437 38.9
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 7.6e-52 209.9 436 37.6
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 9.9e-52 209.5 461 36.9
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 1.3e-51 209.1 431 38.3
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 1.7e-51 208.8 426 39.7
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 1.7e-51 208.8 413 38.7
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 2.9e-51 208.0 422 38.2
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 4.9e-51 207.2 442 36.4
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.1e-50 206.1 426 38.0
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 2.4e-50 204.9 361 41.6
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 2.4e-50 204.9 406 37.9
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.2e-50 204.5 445 37.3
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 4.2e-50 204.1 399 39.8
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.2e-49 202.6 428 36.2
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.6e-49 202.2 386 37.8
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 2.1e-49 201.8 439 35.1
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 3.5e-49 201.1 443 37.0
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 3.5e-49 201.1 471 36.7
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 3.5e-49 201.1 407 39.8
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 3.5e-49 201.1 419 37.5
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 4.6e-49 200.7 515 35.5
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 7.9e-49 199.9 502 35.9
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 1.8e-48 198.7 377 40.6
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 2.3e-48 198.4 414 35.7
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 3.0e-48 198.0 410 37.6
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.9e-47 195.3 425 36.7
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 4.3e-47 194.1 426 36.9
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 7.4e-47 193.4 437 35.9
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 9.6e-47 193.0 379 38.3
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 9.6e-47 193.0 416 37.5
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.6e-46 192.2 399 38.8
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.6e-46 192.2 442 36.4
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 4.8e-46 190.7 411 36.7
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 8.2e-46 189.9 439 36.2
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 1.8e-45 188.7 366 37.4
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 2.4e-45 188.3 314 45.2
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 5.3e-45 187.2 402 37.8
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 5.8e-44 183.7 423 35.2
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.0e-43 183.0 419 39.1
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.3e-43 182.6 385 37.9
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 2.2e-43 181.8 383 39.9
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 2.1e-41 175.3 247 49.4
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 2.3e-40 171.8 429 34.0
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 1.3e-38 166.0 290 43.8
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 2.2e-38 165.2 560 30.2
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 2.0e-36 158.7 447 31.8
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 5.9e-36 157.1 290 40.3
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 7.7e-36 156.8 402 33.8
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.9e-34 152.1 341 37.8
BcaB05g22432 Brassica carinata HOM05D000003 ORTHO05D000004 4.6e-33 147.5 394 32.5
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 1.7e-30 139.0 439 29.8
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 2.2e-30 138.7 332 37.0
BcaB04g17740 Brassica carinata HOM05D000496 ORTHO05D000411 9.1e-29 133.3 210 36.7
Aa31sc1015G10 Aethionema arabicum HOM05D000496 ORTHO05D000411 2.0e-28 132.1 232 35.3
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.5e-27 127.1 92 70.7
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 4.2e-26 124.4 242 39.7
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 5.5e-26 124.0 185 47.6
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 7.2e-26 123.6 367 33.8
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.7e-25 121.7 396 30.1
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.8e-24 119.0 110 55.5
Aa31LG9G3350 Aethionema arabicum HOM05D000496 ORTHO05D000411 2.3e-24 118.6 229 34.5
Aa31sc480G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.0e-24 118.2 218 33.9
BcaB01g00938 Brassica carinata HOM05D000496 ORTHO05D000411 3.0e-24 118.2 320 30.9
Aa31sc387G10 Aethionema arabicum HOM05D000496 ORTHO05D000411 2.6e-23 115.2 218 33.5
BcaB02g10661 Brassica carinata HOM05D000496 ORTHO05D000411 2.6e-23 115.2 227 34.8
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 2.6e-23 115.2 440 27.3
C09p39910 Brassica napus HOM05D000496 ORTHO05D000411 1.7e-22 112.5 203 36.5
AT3G31430 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 2.2e-22 112.1 216 36.6
Aa31LG1G4950 Aethionema arabicum HOM05D000496 ORTHO05D000411 2.8e-22 111.7 218 34.4
SpUn0816_0010 Schrenkiella parvula HOM05D013103 ORTHO05D000411 2.8e-22 111.7 132 47.7
Aa31LG6G9170 Aethionema arabicum HOM05D000496 ORTHO05D000411 3.7e-22 111.3 238 31.9
BcaC06g36411 Brassica carinata HOM05D000496 ORTHO05D000411 1.8e-21 109.0 218 33.0
BcaC02g10886 Brassica carinata HOM05D000496 ORTHO05D000411 5.3e-21 107.5 219 32.9
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 9.1e-21 106.7 427 28.1
BcaC07g37790 Brassica carinata HOM05D000496 ORTHO05D000411 4.5e-20 104.4 219 32.0
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 5.9e-20 104.0 406 29.1
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 5.0e-19 100.9 290 32.1
Aa31LG5G23740 Aethionema arabicum HOM05D000496 ORTHO05D000411 7.2e-18 97.1 201 34.8
Aa31sc153G50 Aethionema arabicum HOM05D000003 ORTHO05D000411 7.2e-18 97.1 204 32.4
BcaB08g35825 Brassica carinata HOM05D013103 ORTHO05D018244 1.6e-17 95.9 360 28.3
BcaC09g48758 Brassica carinata HOM05D000496 ORTHO05D000411 1.6e-17 95.9 320 27.5
CARHR260200 Cardamine hirsuta HOM05D013103 ORTHO05D000411 2.1e-17 95.5 94 48.9
BcaC01g02297 Brassica carinata HOM05D000496 ORTHO05D000411 3.6e-17 94.7 237 29.5
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 6.1e-17 94.0 288 31.6
Aa31sc52G80 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.0e-17 93.6 177 35.0
Aa31LG8G12070 Aethionema arabicum HOM05D000496 ORTHO05D000411 1.0e-16 93.2 201 30.8
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 8.8e-16 90.1 85 50.6
BcaC02g11107 Brassica carinata HOM05D000496 ORTHO05D000411 1.5e-15 89.4 206 32.0
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 1.5e-15 89.4 104 50.0
CARHR119870 Cardamine hirsuta HOM05D000496 ORTHO05D000411 2.0e-15 89.0 86 48.8
BraA06t25016Z Brassica rapa HOM05D013103 ORTHO05D018244 1.7e-14 85.9 321 25.9
BcaB06g26151 Brassica carinata HOM05D013103 ORTHO05D000411 2.8e-14 85.1 132 40.9
Thhalv10012330m.g Eutrema salsugineum HOM05D000496 ORTHO05D000411 1.4e-13 82.8 219 29.7
BcaC09g51704 Brassica carinata HOM05D000496 ORTHO05D000411 4.1e-13 81.3 88 47.7
BcaC02g09241 Brassica carinata HOM05D000496 ORTHO05D000411 2.6e-12 78.6 188 28.7
CARHR153090 Cardamine hirsuta HOM05D000496 ORTHO05D000411 5.9e-12 77.4 94 47.9
BcaC03g15081 Brassica carinata HOM05D000496 ORTHO05D000411 1.0e-11 76.6 187 31.0
AT2G41590 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 2.9e-11 75.1 219 26.9
AT2G13450 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 3.8e-11 74.7 218 28.0
Sp3g24980 Schrenkiella parvula HOM05D000305 ORTHO05D000065 5.0e-11 74.3 66 54.5
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 6.5e-11 73.9 260 28.8
AT2G02103 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 1.5e-10 72.8 219 27.4
BcaB06g25722 Brassica carinata HOM05D013103 ORTHO05D018244 1.9e-10 72.4 94 43.6
BcaC02g08608 Brassica carinata HOM05D000496 ORTHO05D000411 1.9e-10 72.4 91 41.8
CARHR292290 Cardamine hirsuta HOM05D000496 ORTHO05D000411 2.5e-10 72.0 94 42.6
AT5G18636 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 3.2e-10 71.6 219 26.5
AT5G25200 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 4.2e-10 71.2 219 26.5
AT3G42140 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 5.5e-10 70.9 188 30.3
AT2G17920 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 9.4e-10 70.1 219 25.1
BcaC08g42965 Brassica carinata HOM05D000496 ORTHO05D000411 1.2e-09 69.7 260 24.6
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 1.6e-09 69.3 198 33.8
BcaB06g27366 Brassica carinata HOM05D000496 ORTHO05D000411 4.7e-09 67.8 188 30.3
C09p36210 Brassica napus HOM05D013103 ORTHO05D018244 4.7e-09 67.8 326 24.8
BolC9t56459H Brassica oleracea HOM05D013103 ORTHO05D018244 4.7e-09 67.8 326 24.8
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 4.7e-09 67.8 122 38.5
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 1.0e-08 66.6 183 32.8
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 1.4e-08 66.2 188 30.9
BolC8t51212H Brassica oleracea HOM05D000496 ORTHO05D000411 4.0e-08 64.7 203 27.1
C01p46210 Brassica napus HOM05D000496 ORTHO05D000411 8.8e-08 63.5 203 26.6
BcaB01g00478 Brassica carinata HOM05D000496 ORTHO05D000411 1.2e-07 63.2 216 28.2
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.2e-07 63.2 275 29.8
AT2G13510 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 5.7e-07 60.8 95 36.8
AT5G25600 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 1.3e-06 59.7 179 27.9
AT3G57587 Arabidopsis thaliana HOM05D000496 ORTHO05D000411 2.8e-06 58.5 85 41.2
Aa31sc248G30 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.7e-06 58.2 79 44.3
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 4.8e-06 57.8 87 41.4
BcaB05g24429 Brassica carinata HOM05D000496 ORTHO05D000411 8.3e-06 57.0 201 26.4


User provided reference genes

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