Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 2.2e-42 175.3 89 100.0
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 2.2e-42 175.3 89 100.0
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 1.0e-39 166.4 89 95.5
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 4.7e-37 157.5 82 96.3
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 1.0e-36 156.4 82 96.3
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 3.0e-36 154.8 89 86.5
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 2.8e-34 148.3 89 79.8
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 1.8e-33 145.6 89 78.7
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 7.0e-33 143.7 85 78.8
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.2e-32 142.9 91 78.0
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 7.7e-32 140.2 108 72.2
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 8.0e-29 130.2 86 72.1
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 1.9e-22 109.0 78 69.2
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 5.7e-19 97.4 86 57.0
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 1.3e-18 96.3 79 58.2
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.3e-18 96.3 76 61.8
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 2.2e-18 95.5 76 61.8
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 2.8e-18 95.1 86 54.7
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 4.8e-18 94.4 70 61.4
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 1.1e-17 93.2 79 58.2
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 1.1e-17 93.2 70 58.6
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 3.1e-17 91.7 75 60.0
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 4.1e-17 91.3 70 60.0
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 5.4e-17 90.9 75 57.3
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 7.0e-17 90.5 79 53.2
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 7.0e-17 90.5 79 58.2
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 7.0e-17 90.5 75 58.7
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 1.2e-16 89.7 76 55.3
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.6e-16 89.4 79 55.7
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 2.0e-16 89.0 79 55.7
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 2.7e-16 88.6 75 57.3
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 4.5e-16 87.8 79 54.4
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 5.9e-16 87.4 77 57.1
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 7.7e-16 87.0 77 55.8
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.0e-15 86.7 79 54.4
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 1.0e-15 86.7 75 57.3
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 1.3e-15 86.3 77 55.8
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 1.7e-15 85.9 82 47.6
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 1.7e-15 85.9 82 47.6
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 1.7e-15 85.9 79 53.2
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 2.3e-15 85.5 75 57.3
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 2.9e-15 85.1 84 50.0
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 5.0e-15 84.3 77 53.2
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 6.6e-15 84.0 73 53.4
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 8.6e-15 83.6 75 57.3
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 8.6e-15 83.6 71 56.3
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 8.6e-15 83.6 71 56.3
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.5e-14 82.8 69 55.1
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 1.5e-14 82.8 84 41.7
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 1.9e-14 82.4 75 52.0
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 2.5e-14 82.0 77 50.6
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 3.3e-14 81.6 79 51.9
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 9.5e-14 80.1 84 46.4
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 1.2e-13 79.7 79 45.6
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 2.1e-13 79.0 79 53.2
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 2.8e-13 78.6 77 53.2
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 6.1e-13 77.4 77 49.4
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 6.1e-13 77.4 84 44.0
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 8.0e-13 77.0 79 49.4
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 1.0e-12 76.6 74 56.8
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 1.4e-12 76.3 70 54.3
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 1.4e-12 76.3 99 41.4
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 1.8e-12 75.9 83 43.4
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 2.3e-12 75.5 77 50.6
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 6.8e-12 73.9 79 43.0
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 8.9e-12 73.6 73 47.9
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.2e-11 73.2 73 46.6
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.2e-11 73.2 79 46.8
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 2.6e-11 72.0 77 50.6
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.4e-11 71.2 77 49.4
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.4e-11 71.2 77 49.4
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 5.7e-11 70.9 79 45.6
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 7.5e-11 70.5 77 49.4
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 7.5e-11 70.5 77 49.4
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 9.8e-11 70.1 57 56.1
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 9.8e-11 70.1 54 63.0
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 1.3e-10 69.7 75 48.0
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 1.7e-10 69.3 77 46.8
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 2.2e-10 68.9 77 49.4
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.2e-10 68.9 77 49.4
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 2.2e-10 68.9 77 49.4
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 6.3e-10 67.4 54 55.6
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 6.3e-10 67.4 57 61.4
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 8.3e-10 67.0 57 61.4
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 7.0e-09 63.9 54 59.3
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.2e-08 63.2 79 48.1
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.2e-08 63.2 79 48.1
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 1.2e-08 63.2 62 48.4
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 1.6e-08 62.8 51 58.8
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 2.0e-08 62.4 55 56.4
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 2.0e-08 62.4 50 62.0
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 2.7e-08 62.0 60 50.0
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 5.9e-08 60.8 76 43.4
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 5.9e-08 60.8 55 54.5
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 5.9e-08 60.8 80 43.8
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 5.9e-08 60.8 56 51.8
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 5.9e-08 60.8 56 50.0
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 5.9e-08 60.8 56 50.0
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 7.8e-08 60.5 55 52.7
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 7.8e-08 60.5 55 52.7
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 1.3e-07 59.7 68 45.6
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 5.0e-07 57.8 70 51.4
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 6.6e-07 57.4 57 54.4
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 1.5e-06 56.2 73 45.2
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 1.5e-06 56.2 54 48.1
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 4.3e-06 54.7 73 43.8
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 5.6e-06 54.3 74 45.9
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 5.6e-06 54.3 74 45.9


User provided reference genes

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