Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42763 Brassica carinata HOM05D005622 ORTHO05D002854 3.6e-38 161.0 76 100.0
vmacro16405 Vaccinium macrocarpon HOM05D000131 ORTHO05D000086 2.6e-20 101.7 72 63.9
HPP92_001057 Vanilla planifolia HOM05D005622 ORTHO05D002854 7.5e-20 100.1 71 64.8
Migut.K01489 Erythranthe guttata HOM05D005622 ORTHO05D002854 2.2e-19 98.6 71 59.2
HPP92_001150 Vanilla planifolia HOM05D005622 ORTHO05D002854 2.2e-19 98.6 71 63.4
CSS0021919 Camellia sinensis var. sinensis HOM05D005622 ORTHO05D002854 1.7e-16 89.0 57 64.9
SHI40067 Sapria himalayana HOM05D000424 ORTHO05D002854 4.7e-14 80.9 71 49.3
SHI40097 Sapria himalayana HOM05D000424 ORTHO05D002854 4.7e-14 80.9 71 49.3
Migut.L00233 Erythranthe guttata HOM05D005622 ORTHO05D002854 1.5e-12 75.9 71 52.1
MD11G1315100 Malus domestica HOM05D000424 ORTHO05D002854 3.4e-12 74.7 42 81.0
Migut.K01493 Erythranthe guttata HOM05D005622 ORTHO05D002854 4.9e-11 70.9 46 65.2
Aqoxy2G03251 Aquilegia oxysepala HOM05D005622 ORTHO05D002854 8.4e-11 70.1 46 65.2
arahy.Tifrunner.gnm1.ann1.ZKQQ6L Arachis hypogaea HOM05D000424 ORTHO05D002854 2.4e-10 68.6 45 62.2
Lalb_Chr15g0086301 Lupinus albus HOM05D005622 ORTHO05D002854 3.2e-10 68.2 43 67.4
Migut.K01500 Erythranthe guttata HOM05D000424 ORTHO05D002854 7.1e-10 67.0 45 62.2
arahy.Tifrunner.gnm1.ann1.9U1QHR Arachis hypogaea HOM05D000424 ORTHO05D002854 1.6e-09 65.9 43 65.1
Ca_00463_v3 Cicer arietinum L. HOM05D000424 ORTHO05D002854 1.6e-09 65.9 42 64.3
arahy.Tifrunner.gnm1.ann1.M7NPSI Arachis hypogaea HOM05D000424 ORTHO05D002854 2.1e-09 65.5 43 62.8
Cc04_g03210 Coffea canephora HOM05D000424 ORTHO05D002854 2.1e-09 65.5 43 62.8
Potri.008G191200 Populus trichocarpa HOM05D005622 ORTHO05D002854 6.0e-09 63.9 37 73.0
Solyc01g097130.4 Solanum lycopersicum HOM05D000424 ORTHO05D002854 6.0e-09 63.9 41 63.4
Sopen01g040810 Solanum pennellii HOM05D000424 ORTHO05D002854 6.0e-09 63.9 41 63.4
Glyma.17G203100 Glycine max HOM05D005622 ORTHO05D002854 2.3e-08 62.0 44 56.8
Migut.L00235 Erythranthe guttata HOM05D005622 ORTHO05D002854 3.0e-08 61.6 41 61.0
Zm00001eb347480 Zea mays HOM05D000424 ORTHO05D002854 3.0e-08 61.6 45 66.7
Zm00001eb286070 Zea mays HOM05D000424 ORTHO05D002854 1.9e-07 58.9 45 64.4
MBI19_g17402_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D002854 4.3e-07 57.8 35 68.6
Prupe.3G134300 Prunus persica HOM05D007173 ORTHO05D009151 5.6e-07 57.4 72 37.5
FAN02G2250 Fragaria x ananassa HOM05D007173 ORTHO05D009151 1.2e-06 56.2 72 34.7
FvH4_6g24130 Fragaria vesca HOM05D007173 ORTHO05D009151 2.1e-06 55.5 72 34.7
FAN14G5374 Fragaria x ananassa HOM05D007173 ORTHO05D009151 2.1e-06 55.5 72 34.7
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 2.8e-06 55.1 72 36.1
Ciclev10007960m.g Citrus clementina HOM05D000424 ORTHO05D000355 2.8e-06 55.1 70 37.1
Nitab4.5_0003033g0080 Nicotiana tabacum HOM05D000424 ORTHO05D000355 2.8e-06 55.1 70 34.3
QL10p041753 Quercus lobata HOM05D007173 ORTHO05D009151 3.6e-06 54.7 72 33.3
RcHm_v2.0_Chr3g0483111 Rosa chinensis HOM05D007173 ORTHO05D009151 3.6e-06 54.7 72 34.7
RcHm_v2.0_Chr3g0483141 Rosa chinensis HOM05D007173 ORTHO05D009151 3.6e-06 54.7 72 34.7
Cfa007278 Carpinus fangiana HOM05D007173 ORTHO05D009151 6.2e-06 53.9 70 37.1
Glyma.13G227000 Glycine max HOM05D000424 ORTHO05D002854 6.2e-06 53.9 38 55.3
Cc02_g29420 Coffea canephora HOM05D007173 ORTHO05D009151 8.1e-06 53.5 66 39.4
MD17G1234700 Malus domestica HOM05D007173 ORTHO05D009151 8.1e-06 53.5 72 34.7
Potri.005G066700 Populus trichocarpa HOM05D007173 ORTHO05D009151 8.1e-06 53.5 72 31.9


User provided reference genes

Program Settings