Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42605 Brassica carinata HOM05D000751 ORTHO05D000889 2.1e-79 298.9 147 100.0
C08p36590 Brassica napus HOM05D000751 ORTHO05D000889 4.8e-55 218.0 181 67.4
BolC8t51242H Brassica oleracea HOM05D000751 ORTHO05D000889 4.8e-55 218.0 181 67.4
A09p53780 Brassica napus HOM05D000751 ORTHO05D000889 9.1e-54 213.8 181 66.3
BraA09t40797Z Brassica rapa HOM05D000751 ORTHO05D000889 1.3e-52 209.9 181 65.2
A07p25670 Brassica napus HOM05D000751 ORTHO05D000889 1.6e-42 176.4 193 56.5
BraA07t30207Z Brassica rapa HOM05D000751 ORTHO05D000889 1.6e-42 176.4 193 56.5
C06p27680 Brassica napus HOM05D000751 ORTHO05D000889 2.1e-42 176.0 193 56.5
BolC6t37939H Brassica oleracea HOM05D000751 ORTHO05D000889 1.0e-41 173.7 193 56.0
Thhalv10005749m.g Eutrema salsugineum HOM05D000751 ORTHO05D000889 1.4e-41 173.3 205 54.6
BcaC08g45150 Brassica carinata HOM05D000751 ORTHO05D000889 2.6e-40 169.1 191 55.5
AL5G44190 Arabidopsis lyrata HOM05D000751 ORTHO05D000889 2.8e-39 165.6 204 52.9
CARHR172000 Cardamine hirsuta HOM05D000751 ORTHO05D000889 9.4e-35 150.6 202 50.0
Sp5g01700 Schrenkiella parvula HOM05D000751 ORTHO05D000889 4.7e-34 148.3 207 50.2
Carub.0005s2844 Capsella rubella HOM05D000751 ORTHO05D000889 1.0e-33 147.1 196 51.0
AT3G61690 Arabidopsis thaliana HOM05D000751 ORTHO05D000889 8.3e-23 110.9 156 50.0
Aa31LG10G15690 Aethionema arabicum HOM05D000751 ORTHO05D000889 4.5e-21 105.1 194 44.8
THA.LOC104817345 Tarenaya hassleriana HOM05D000751 ORTHO05D000889 6.6e-20 101.3 202 40.6
THA.LOC104802065 Tarenaya hassleriana HOM05D000751 ORTHO05D000889 2.8e-18 95.9 186 42.5
FAN01G0360 Fragaria x ananassa HOM05D000751 ORTHO05D000889 6.3e-15 84.7 209 36.4
FvH4_7g16250 Fragaria vesca HOM05D000751 ORTHO05D000889 1.1e-14 84.0 209 35.9
FAN06G1708 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.1e-14 84.0 209 35.9
FAN06G2986 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.1e-14 84.0 209 35.9
TPR.G31614 Trifolium pratense HOM05D000751 ORTHO05D000889 1.4e-14 83.6 208 35.1
FAN03G1458 Fragaria x ananassa HOM05D000751 ORTHO05D000889 3.1e-14 82.4 209 35.9
FAN10G1631 Fragaria x ananassa HOM05D000751 ORTHO05D000889 3.1e-14 82.4 209 35.9
Glyma.07G056700 Glycine max HOM05D000751 ORTHO05D000889 3.1e-14 82.4 206 35.0
Ca_30811_v3 Cicer arietinum L. HOM05D000751 ORTHO05D000889 4.1e-14 82.0 208 35.1
arahy.Tifrunner.gnm1.ann1.2FK0GQ Arachis hypogaea HOM05D000751 ORTHO05D000889 7.0e-14 81.3 207 34.3
Ca_26355_v3 Cicer arietinum L. HOM05D000751 ORTHO05D000889 1.6e-13 80.1 203 35.0
FAN10G3268 Fragaria x ananassa HOM05D000751 ORTHO05D000889 1.6e-13 80.1 208 35.6
Lalb_Chr04g0254471 Lupinus albus HOM05D000751 ORTHO05D000889 1.6e-13 80.1 206 34.0
arahy.Tifrunner.gnm1.ann1.8G1IGY Arachis hypogaea HOM05D000751 ORTHO05D000889 2.7e-13 79.3 202 34.2
VMungo0331G1997 Vigna mungo HOM05D000751 ORTHO05D000889 2.7e-13 79.3 203 33.5
Medtr8g027790 Medicago truncatula HOM05D000751 ORTHO05D000889 5.9e-13 78.2 208 34.6
Phvul.010G112700 Phaseolus vulgaris HOM05D000751 ORTHO05D000889 5.9e-13 78.2 204 32.8
Actinidia28502 Actinidia chinensis HOM05D000751 ORTHO05D000889 1.7e-12 76.6 209 32.1
Glyma.16G025800 Glycine max HOM05D000751 ORTHO05D000889 2.3e-12 76.3 206 35.0
Lj3g0026226 Lotus japonicus HOM05D000751 ORTHO05D000889 2.3e-12 76.3 203 32.0
Lalb_Chr17g0342511 Lupinus albus HOM05D000751 ORTHO05D000889 2.3e-12 76.3 207 35.3
Manes.05G024100 Manihot esculenta HOM05D000751 ORTHO05D000889 3.8e-12 75.5 206 33.0
Prupe.2G186200 Prunus persica HOM05D000751 ORTHO05D000889 3.8e-12 75.5 207 32.9
RcHm_v2.0_Chr1g0359271 Rosa chinensis HOM05D000751 ORTHO05D000889 6.6e-12 74.7 207 34.3
Thecc.01G344300 Theobroma cacao HOM05D000751 ORTHO05D000889 6.6e-12 74.7 202 31.7
Lj1g0025738 Lotus japonicus HOM05D000751 ORTHO05D000889 8.6e-12 74.3 185 35.7
Phvul.006G112100 Phaseolus vulgaris HOM05D000751 ORTHO05D000889 8.6e-12 74.3 204 33.8
Psat4g214480 Pisum sativum HOM05D000751 ORTHO05D000889 1.9e-11 73.2 207 32.9
CSS0016436 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D000889 3.3e-11 72.4 202 30.7
CSS0024343 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D000889 3.3e-11 72.4 202 30.7
Ciclev10023855m.g Citrus clementina HOM05D000751 ORTHO05D000889 4.3e-11 72.0 197 35.0
AUR62023477 Chenopodium quinoa HOM05D000751 ORTHO05D000889 9.5e-11 70.9 201 35.3
Dinv18736 Davidia involucrata HOM05D000751 ORTHO05D000889 9.5e-11 70.9 207 31.9
Manes.01G247200 Manihot esculenta HOM05D000751 ORTHO05D000889 1.2e-10 70.5 202 30.7
VMungo0540G1551 Vigna mungo HOM05D000751 ORTHO05D000889 1.2e-10 70.5 203 33.0
PGR031G2844 Punica granatum HOM05D000751 ORTHO05D000889 2.1e-10 69.7 144 37.5
CANSAT56G1511 Cannabis sativa HOM05D000751 ORTHO05D000889 3.6e-10 68.9 204 33.8
Cfa003812 Carpinus fangiana HOM05D000751 ORTHO05D000889 3.6e-10 68.9 201 32.8
MD07G1148100 Malus domestica HOM05D000751 ORTHO05D000889 3.6e-10 68.9 206 33.0
Eucgr.D02366 Eucalyptus grandis HOM05D000751 ORTHO05D000889 4.7e-10 68.6 206 32.0
Cpa.g.sc273.3 Carica papaya HOM05D000751 ORTHO05D000889 8.0e-10 67.8 208 32.7
Ah.05g179730 Amaranthus hybridus HOM05D000751 ORTHO05D000889 1.0e-09 67.4 195 36.4
MSTRG.4812 Avicennia marina HOM05D000751 ORTHO05D000889 1.4e-09 67.0 205 31.2
Duzib138G1949 Durio zibethinus HOM05D000751 ORTHO05D000889 1.4e-09 67.0 207 30.4
MD01G1079200 Malus domestica HOM05D000751 ORTHO05D000889 1.4e-09 67.0 205 33.2
AUR62004473 Chenopodium quinoa HOM05D000751 ORTHO05D000889 1.8e-09 66.6 201 34.8
Atru.chr5.651 Acer truncatum HOM05D000751 ORTHO05D000889 2.3e-09 66.2 208 33.2
ECA236G0082 Erigeron canadensis HOM05D000751 ORTHO05D000889 6.8e-09 64.7 165 34.5
Gohir.D07G143400 Gossypium hirsutum HOM05D000751 ORTHO05D000889 8.9e-09 64.3 207 30.9
Gohir.A07G138300 Gossypium hirsutum HOM05D000751 ORTHO05D000889 1.2e-08 63.9 212 32.5
Nitab4.5_0001829g0050 Nicotiana tabacum HOM05D000751 ORTHO05D000889 1.2e-08 63.9 201 31.3
Haze_15642 Corylus avellana HOM05D000751 ORTHO05D000889 2.0e-08 63.2 201 31.3
SalBow5G0471 Salvia bowleyana HOM05D000751 ORTHO05D000889 3.4e-08 62.4 202 30.7
Aqoxy7G00122 Aquilegia oxysepala HOM05D000751 ORTHO05D000889 4.4e-08 62.0 197 31.5
QL04p056643 Quercus lobata HOM05D000751 ORTHO05D000889 4.4e-08 62.0 201 31.3
Sc23g0002150 Simmondsia chinensis HOM05D000751 ORTHO05D000889 4.4e-08 62.0 195 33.8
SGA_v2.0_scaffold11G05730 Striga asiatica HOM05D000751 ORTHO05D000889 4.4e-08 62.0 200 30.0
Gohir.D08G044500 Gossypium hirsutum HOM05D000751 ORTHO05D000889 7.5e-08 61.2 193 30.6
SGA_v2.0_scaffold43G16370 Striga asiatica HOM05D000751 ORTHO05D000889 7.5e-08 61.2 198 30.3
CAN.G986.20 Capsicum annuum HOM05D000751 ORTHO05D000889 9.8e-08 60.8 205 30.7
ECA236G1997 Erigeron canadensis HOM05D000751 ORTHO05D000889 9.8e-08 60.8 165 33.3
Migut.N01553 Erythranthe guttata HOM05D000751 ORTHO05D000889 9.8e-08 60.8 191 33.5
Lalb_Chr18g0044381 Lupinus albus HOM05D000751 ORTHO05D000889 9.8e-08 60.8 198 32.3
EL10Ac1g00291 Beta vulgaris HOM05D000751 ORTHO05D000889 2.2e-07 59.7 201 34.3
Gorai.001G155400 Gossypium raimondii HOM05D000751 ORTHO05D000889 2.9e-07 59.3 211 32.2
Gorai.004G043500 Gossypium raimondii HOM05D000751 ORTHO05D000889 2.9e-07 59.3 198 30.8
Rhsim01G0171600 Rhododendron simsii HOM05D000751 ORTHO05D000889 2.9e-07 59.3 198 33.3
Sopen10g005300 Solanum pennellii HOM05D000751 ORTHO05D000889 2.9e-07 59.3 207 31.9
GSVIVG01027083001 Vitis vinifera HOM05D000751 ORTHO05D000889 2.9e-07 59.3 196 31.1
DCAR_006969 Daucus carota HOM05D000751 ORTHO05D000889 3.7e-07 58.9 199 35.7
Gohir.A08G033900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 3.7e-07 58.9 198 30.3
Nn3g19032 Nelumbo nucifera HOM05D000751 ORTHO05D000889 3.7e-07 58.9 203 33.5
Solyc10g009490.2 Solanum lycopersicum HOM05D000751 ORTHO05D000889 3.7e-07 58.9 207 31.9
Dinv32574 Davidia involucrata HOM05D000751 ORTHO05D000889 6.4e-07 58.2 207 30.0
SHI13284 Sapria himalayana HOM05D000751 ORTHO05D000889 8.3e-07 57.8 155 32.9
CSS0000685 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D000889 1.4e-06 57.0 200 30.5
CSS0040691 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D000889 1.4e-06 57.0 206 33.0
TWI59G1107 Tripterygium wilfordii HOM05D000751 ORTHO05D000889 1.4e-06 57.0 202 30.2
GSVIVG01028706001 Vitis vinifera HOM05D000751 ORTHO05D000889 1.4e-06 57.0 199 30.7
Solyc01g095730.4 Solanum lycopersicum HOM05D000751 ORTHO05D000889 1.9e-06 56.6 198 30.8
Sopen01g039480 Solanum pennellii HOM05D000751 ORTHO05D000889 1.9e-06 56.6 198 30.8
Lj3C908T15 Lonicera japonica HOM05D000751 ORTHO05D000889 5.4e-06 55.1 191 30.4
CiPaw.02G039700 Carya illinoinensis HOM05D000751 ORTHO05D000889 7.0e-06 54.7 205 29.8
Nn1g01852 Nelumbo nucifera HOM05D000751 ORTHO05D000889 7.0e-06 54.7 205 28.8
Nitab4.5_0000838g0100 Nicotiana tabacum HOM05D000751 ORTHO05D000889 9.2e-06 54.3 205 28.8


User provided reference genes

Program Settings