Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42583 Brassica carinata HOM05D000249 ORTHO05D013466 5.1e-43 177.2 80 100.0
BcaB02g09526 Brassica carinata HOM05D000249 ORTHO05D000206 4.5e-23 110.9 67 76.1
BcaC07g42582 Brassica carinata HOM05D000249 ORTHO05D000206 7.9e-20 100.1 67 71.6
BraA05t20053Z Brassica rapa HOM05D000249 ORTHO05D000206 8.8e-19 96.7 61 68.9
BcaC02g11528 Brassica carinata HOM05D000249 ORTHO05D000206 1.1e-18 96.3 61 68.9
A05p11080 Brassica napus HOM05D000249 ORTHO05D000206 1.1e-18 96.3 66 69.7
BraA05t20054Z Brassica rapa HOM05D000249 ORTHO05D000206 1.1e-18 96.3 66 69.7
A05p11070 Brassica napus HOM05D000249 ORTHO05D000206 4.4e-18 94.4 61 67.2
BolC4t23022H Brassica oleracea HOM05D000249 ORTHO05D013466 6.3e-17 90.5 62 69.4
BcaC02g11521 Brassica carinata HOM05D000249 ORTHO05D013466 1.8e-16 89.0 63 60.3
C04p14450 Brassica napus HOM05D000249 ORTHO05D013466 1.8e-16 89.0 63 60.3
BolC4t23028H Brassica oleracea HOM05D000249 ORTHO05D013466 1.8e-16 89.0 63 60.3
BcaC07g42584 Brassica carinata HOM05D000249 ORTHO05D013466 1.2e-15 86.3 63 60.3
BcaB02g09527 Brassica carinata HOM05D000249 ORTHO05D000206 1.6e-15 85.9 66 62.1
C04p14360 Brassica napus HOM05D000249 ORTHO05D000206 2.6e-15 85.1 50 70.0
Carub.0008s0239 Capsella rubella HOM05D000249 ORTHO05D013466 1.2e-12 76.3 64 57.8
Thhalv10017748m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 6.1e-12 73.9 63 54.0
A05p11090 Brassica napus HOM05D000249 ORTHO05D016751 2.3e-11 72.0 64 59.4
BraA05t20056Z Brassica rapa HOM05D000249 ORTHO05D016751 2.3e-11 72.0 64 59.4
BcaC02g11525 Brassica carinata HOM05D000249 ORTHO05D016751 3.0e-11 71.6 64 59.4
C04p14430 Brassica napus HOM05D000249 ORTHO05D016751 3.0e-11 71.6 64 59.4
BolC4t23026H Brassica oleracea HOM05D000249 ORTHO05D016751 3.0e-11 71.6 64 59.4
BcaB02g09528 Brassica carinata HOM05D000249 ORTHO05D016751 4.0e-11 71.2 64 60.9
Thhalv10017533m.g Eutrema salsugineum HOM05D000249 ORTHO05D013466 8.8e-11 70.1 64 53.1
C04p14400 Brassica napus HOM05D000249 ORTHO05D016751 1.1e-10 69.7 59 64.4
A03p16790 Brassica napus HOM05D000249 ORTHO05D000206 1.5e-10 69.3 66 54.5
BraA03t10967Z Brassica rapa HOM05D000249 ORTHO05D000206 1.5e-10 69.3 66 54.5
Thhalv10029396m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.5e-10 69.3 64 48.4
Thhalv10017704m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.0e-10 68.9 64 54.7
Thhalv10017832m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.6e-10 68.6 64 48.4
BcaC01g05987 Brassica carinata HOM05D000249 ORTHO05D023904 3.3e-10 68.2 69 43.5
C03p19960 Brassica napus HOM05D000249 ORTHO05D023904 4.4e-10 67.8 69 43.5
BolC3t14374H Brassica oleracea HOM05D000249 ORTHO05D023904 4.4e-10 67.8 69 43.5
BcaB01g04129 Brassica carinata HOM05D000249 ORTHO05D013797 5.7e-10 67.4 63 50.8
BcaC01g06030 Brassica carinata HOM05D000249 ORTHO05D000206 5.7e-10 67.4 66 53.0
Thhalv10017778m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 5.7e-10 67.4 64 51.6
AL8G13050 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 7.5e-10 67.0 66 53.0
CARHR176370 Cardamine hirsuta HOM05D000249 ORTHO05D000206 9.7e-10 66.6 64 50.0
BcaC03g14117 Brassica carinata HOM05D000249 ORTHO05D000206 1.3e-09 66.2 66 47.0
C02p13570 Brassica napus HOM05D000249 ORTHO05D000206 1.3e-09 66.2 66 47.0
C03p19760 Brassica napus HOM05D000249 ORTHO05D000206 1.3e-09 66.2 66 51.5
C06p38620 Brassica napus HOM05D000249 ORTHO05D013466 1.3e-09 66.2 61 54.1
BolC2t07469H Brassica oleracea HOM05D000249 ORTHO05D000206 1.3e-09 66.2 66 47.0
BolC3t14355H Brassica oleracea HOM05D000249 ORTHO05D000206 1.3e-09 66.2 66 51.5
Thhalv10017591m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.3e-09 66.2 63 52.4
BcaC08g46037 Brassica carinata HOM05D000249 ORTHO05D013466 1.7e-09 65.9 64 53.1
A03p16950 Brassica napus HOM05D000249 ORTHO05D023904 1.7e-09 65.9 69 40.6
C06p38320 Brassica napus HOM05D000249 ORTHO05D013466 1.7e-09 65.9 64 53.1
BolC4t23023H Brassica oleracea HOM05D000249 ORTHO05D016751 1.7e-09 65.9 64 57.8
BcaB01g04130 Brassica carinata HOM05D000249 ORTHO05D000206 3.7e-09 64.7 61 50.8
C04p14370 Brassica napus HOM05D000249 ORTHO05D016751 3.7e-09 64.7 62 56.5
A02p07930 Brassica napus HOM05D000249 ORTHO05D000206 6.3e-09 63.9 66 45.5
BraA02t05866Z Brassica rapa HOM05D000249 ORTHO05D000206 6.3e-09 63.9 66 45.5
Sp5g22490 Schrenkiella parvula HOM05D000249 ORTHO05D000206 6.3e-09 63.9 64 50.0
Thhalv10017515m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.1e-08 63.2 67 46.3
A03p16800 Brassica napus HOM05D000249 ORTHO05D024375 4.1e-08 61.2 64 43.8
A07p32390 Brassica napus HOM05D000249 ORTHO05D000206 4.1e-08 61.2 63 50.8
BraA03t10968Z Brassica rapa HOM05D000249 ORTHO05D024375 4.1e-08 61.2 64 43.8
BraA07t30862Z Brassica rapa HOM05D000249 ORTHO05D000206 4.1e-08 61.2 63 50.8
BcaB03g15375 Brassica carinata HOM05D000249 ORTHO05D016751 5.3e-08 60.8 63 49.2
A04p22820 Brassica napus HOM05D000249 ORTHO05D000206 5.3e-08 60.8 64 42.2
BraA04t17821Z Brassica rapa HOM05D000249 ORTHO05D000206 5.3e-08 60.8 64 42.2
Thhalv10017616m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 5.3e-08 60.8 64 46.9
A04p23680 Brassica napus HOM05D000249 ORTHO05D000206 7.0e-08 60.5 63 46.0
BraA04t17894Z Brassica rapa HOM05D000249 ORTHO05D000206 7.0e-08 60.5 63 46.0
Thhalv10029170m.g Eutrema salsugineum HOM05D000249 ORTHO05D013797 9.1e-08 60.1 64 45.3
BcaB05g24288 Brassica carinata HOM05D000249 ORTHO05D000206 1.2e-07 59.7 67 44.8
BcaB06g28469 Brassica carinata HOM05D000249 ORTHO05D000206 1.6e-07 59.3 63 46.0
C04p60130 Brassica napus HOM05D000249 ORTHO05D000206 1.6e-07 59.3 63 46.0
BolC4t27516H Brassica oleracea HOM05D000249 ORTHO05D000206 1.6e-07 59.3 63 46.0
Thhalv10017708m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.6e-07 59.3 64 43.8
A04p19060 Brassica napus HOM05D000249 ORTHO05D023917 2.0e-07 58.9 57 50.9
A04p22800 Brassica napus HOM05D000249 ORTHO05D000206 2.0e-07 58.9 65 44.6
BraA04t17505Z Brassica rapa HOM05D000249 ORTHO05D023917 2.0e-07 58.9 57 50.9
Thhalv10029317m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.0e-07 58.9 64 46.9
BcaB03g15363 Brassica carinata HOM05D000249 ORTHO05D013466 2.7e-07 58.5 46 56.5
A05p03890 Brassica napus HOM05D000249 ORTHO05D000206 2.7e-07 58.5 69 46.4
C08p38390 Brassica napus HOM05D000249 ORTHO05D000206 2.7e-07 58.5 58 50.0
BcaB01g02785 Brassica carinata HOM05D000249 ORTHO05D013797 4.5e-07 57.8 64 45.3
BraA04t17819Z Brassica rapa HOM05D000249 ORTHO05D000206 4.5e-07 57.8 65 44.6
Thhalv10029266m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 4.5e-07 57.8 64 45.3
Thhalv10017621m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 5.9e-07 57.4 49 51.0
BcaB03g15374 Brassica carinata HOM05D000249 ORTHO05D013466 7.7e-07 57.0 63 46.0
BraA03t12040Z Brassica rapa HOM05D000249 ORTHO05D000206 7.7e-07 57.0 66 42.4
Thhalv10017955m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 7.7e-07 57.0 52 50.0
BcaB01g02383 Brassica carinata HOM05D000249 ORTHO05D000206 1.0e-06 56.6 65 41.5
BcaB01g02828 Brassica carinata HOM05D000249 ORTHO05D000206 1.0e-06 56.6 67 43.3
BcaC01g04741 Brassica carinata HOM05D000249 ORTHO05D000206 1.0e-06 56.6 67 43.3
C03p34280 Brassica napus HOM05D000249 ORTHO05D000206 1.0e-06 56.6 67 43.3
C05p62200 Brassica napus HOM05D000249 ORTHO05D000206 1.0e-06 56.6 68 45.6
BolC3t15737H Brassica oleracea HOM05D000249 ORTHO05D000206 1.0e-06 56.6 67 43.3
BolC3t15736H Brassica oleracea HOM05D000249 ORTHO05D000206 1.3e-06 56.2 66 42.4
Thhalv10029145m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 1.3e-06 56.2 45 60.0
Sp4g12680 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.3e-06 56.2 66 45.5
BcaB01g02827 Brassica carinata HOM05D000249 ORTHO05D000206 1.7e-06 55.8 68 45.6
C03p19950 Brassica napus HOM05D000249 ORTHO05D000206 1.7e-06 55.8 51 47.1
BolC3t14373H Brassica oleracea HOM05D000249 ORTHO05D000206 1.7e-06 55.8 51 47.1
BcaC02g11527 Brassica carinata HOM05D000249 ORTHO05D000206 2.2e-06 55.5 30 76.7
A03p16940 Brassica napus HOM05D000249 ORTHO05D023904 2.2e-06 55.5 69 43.5
C04p14380 Brassica napus HOM05D000249 ORTHO05D000206 2.2e-06 55.5 30 76.7
BolC3t15741H Brassica oleracea HOM05D000249 ORTHO05D000206 2.2e-06 55.5 67 44.8
Carub.0006s0462 Capsella rubella HOM05D000249 ORTHO05D000206 2.9e-06 55.1 66 50.0
C03p34330 Brassica napus HOM05D000249 ORTHO05D000206 3.8e-06 54.7 66 40.9
BcaC02g11089 Brassica carinata HOM05D000249 ORTHO05D032228 5.0e-06 54.3 76 39.5
BcaB03g13187 Brassica carinata HOM05D000249 ORTHO05D013797 6.5e-06 53.9 42 54.8
AL3G53220 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 8.5e-06 53.5 66 43.9
AL3G53230 Arabidopsis lyrata HOM05D000085 ORTHO05D001460 8.5e-06 53.5 66 43.9
BcaC02g11090 Brassica carinata HOM05D000249 ORTHO05D000206 8.5e-06 53.5 64 42.2
A03p28390 Brassica napus HOM05D000249 ORTHO05D000206 8.5e-06 53.5 67 41.8
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 8.5e-06 53.5 64 39.1
BraA03t12044Z Brassica rapa HOM05D000249 ORTHO05D000206 8.5e-06 53.5 67 41.8
Thhalv10029517m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 8.5e-06 53.5 63 44.4


User provided reference genes

Program Settings