Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 4.7e-35 150.6 74 100.0
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 2.0e-25 118.6 75 80.0
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 5.4e-23 110.5 58 93.1
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 5.4e-23 110.5 58 93.1
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 5.4e-23 110.5 58 93.1
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 5.4e-23 110.5 58 93.1
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-22 109.4 58 91.4
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-22 108.6 58 91.4
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 2.1e-22 108.6 58 91.4
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 4.6e-22 107.5 58 89.7
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 4.6e-22 107.5 58 89.7
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 4.6e-22 107.5 58 89.7
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 6.0e-22 107.1 58 89.7
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 1.0e-21 106.3 59 89.8
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.3e-21 105.9 58 87.9
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 1.3e-21 105.9 58 87.9
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 3.0e-21 104.8 58 86.2
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 5.1e-21 104.0 58 86.2
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 5.1e-21 104.0 58 86.2
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 2.5e-20 101.7 58 81.0
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 2.1e-19 98.6 58 81.0
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 2.8e-19 98.2 58 81.0
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 6.2e-19 97.1 58 81.0
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.4e-18 95.9 58 79.3
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.4e-18 95.9 58 79.3
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 1.4e-18 95.9 58 79.3
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.8e-18 95.5 58 77.6
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.8e-18 95.5 58 81.0
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.8e-18 95.5 58 81.0
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.8e-18 95.5 58 77.6
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.4e-18 95.1 58 77.6
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.4e-18 95.1 58 79.3
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 4.0e-18 94.4 58 79.3
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 6.9e-18 93.6 57 78.9
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 9.0e-18 93.2 58 77.6
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 9.0e-18 93.2 58 77.6
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 1.5e-17 92.4 58 75.9
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 2.0e-17 92.0 58 77.6
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 2.0e-17 92.0 58 79.3
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 2.0e-17 92.0 55 80.0
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 2.6e-17 91.7 58 75.9
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.6e-17 91.7 58 75.9
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 2.6e-17 91.7 58 75.9
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.6e-17 91.7 58 75.9
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 3.4e-17 91.3 58 74.1
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 4.5e-17 90.9 52 86.5
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 4.5e-17 90.9 58 75.9
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 5.8e-17 90.5 58 72.4
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 5.8e-17 90.5 58 72.4
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 5.8e-17 90.5 58 72.4
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 5.8e-17 90.5 58 75.9
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 5.8e-17 90.5 58 72.4
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 7.6e-17 90.1 58 77.6
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 9.9e-17 89.7 58 74.1
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 1.3e-16 89.4 58 72.4
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 1.3e-16 89.4 58 70.7
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.7e-16 89.0 58 72.4
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 1.7e-16 89.0 58 72.4
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.7e-16 89.0 58 74.1
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 2.2e-16 88.6 58 72.4
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 2.2e-16 88.6 58 74.1
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.9e-16 88.2 58 70.7
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 2.9e-16 88.2 58 70.7
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 2.9e-16 88.2 58 72.4
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 3.8e-16 87.8 58 74.1
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.8e-16 87.8 57 75.4
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 3.8e-16 87.8 58 74.1
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 4.9e-16 87.4 58 75.9
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 4.9e-16 87.4 58 70.7
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 6.4e-16 87.0 58 70.7
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 6.4e-16 87.0 58 69.0
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.4e-16 86.7 58 72.4
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 8.4e-16 86.7 58 72.4
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 8.4e-16 86.7 59 69.5
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 1.1e-15 86.3 57 75.4
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 1.1e-15 86.3 58 69.0
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.4e-15 85.9 58 69.0
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.9e-15 85.5 58 70.7
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.9e-15 85.5 58 70.7
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.9e-15 85.5 58 69.0
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.9e-15 85.5 58 69.0
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.4e-15 85.1 54 74.1
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.4e-15 85.1 54 74.1
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.4e-15 85.1 58 70.7
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 3.2e-15 84.7 58 70.7
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 3.2e-15 84.7 58 70.7
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 4.2e-15 84.3 54 74.1
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 4.2e-15 84.3 58 74.1
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 4.2e-15 84.3 58 74.1
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 4.2e-15 84.3 54 74.1
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 5.4e-15 84.0 58 69.0
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 5.4e-15 84.0 58 67.2
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 5.4e-15 84.0 58 67.2
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 5.4e-15 84.0 58 67.2
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 5.4e-15 84.0 54 74.1
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 7.1e-15 83.6 58 70.7
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 7.1e-15 83.6 58 72.4
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 9.3e-15 83.2 58 67.2
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 9.3e-15 83.2 58 69.0
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 9.3e-15 83.2 58 70.7
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 9.3e-15 83.2 58 69.0
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.2e-14 82.8 54 72.2
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 1.2e-14 82.8 58 69.0
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.2e-14 82.8 58 72.4
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.2e-14 82.8 58 67.2
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.6e-14 82.4 58 65.5
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 2.1e-14 82.0 58 70.7
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 2.1e-14 82.0 58 67.2
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.7e-14 81.6 58 69.0
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 2.7e-14 81.6 58 69.0
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.7e-14 81.6 58 65.5
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.7e-14 81.6 58 65.5
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 4.6e-14 80.9 58 63.8
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 4.6e-14 80.9 58 69.0
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 6.0e-14 80.5 67 61.2
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 1.0e-13 79.7 58 65.5
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.0e-13 79.7 58 67.2
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.3e-13 79.3 58 65.5
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.8e-13 79.0 58 63.8
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 5.1e-13 77.4 58 65.5
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 5.1e-13 77.4 67 59.7
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 2.5e-12 75.1 59 62.7
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.6e-11 72.4 58 60.3
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 8.1e-11 70.1 96 44.8
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 8.1e-11 70.1 58 56.9
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 9.0e-10 66.6 34 91.2
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.9e-08 61.6 45 68.9
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.1e-07 59.7 59 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.1e-06 55.5 59 45.8
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 3.5e-06 54.7 59 44.1
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 4.6e-06 54.3 59 40.7


User provided reference genes

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