Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42471 Brassica carinata HOM05D008503 ORTHO05D001075 1.2e-26 123.2 110 100.0
A09p66390 Brassica napus HOM05D008503 ORTHO05D001075 1.2e-23 113.2 110 78.2
BraA09t41975Z Brassica rapa HOM05D008503 ORTHO05D001075 1.2e-23 113.2 110 78.2
BcaC07g41995 Brassica carinata HOM05D001415 ORTHO05D001075 4.0e-22 108.2 110 91.8
C08p50550 Brassica napus HOM05D001415 ORTHO05D001075 4.0e-22 108.2 110 91.8
BolC8t52582H Brassica oleracea HOM05D001415 ORTHO05D001075 4.0e-22 108.2 110 91.8
Carub.0001s0681 Capsella rubella HOM05D008503 ORTHO05D001075 2.5e-16 89.0 111 75.7
A10p06020 Brassica napus HOM05D001415 ORTHO05D001075 3.3e-16 88.6 110 85.5
BraA10t42864Z Brassica rapa HOM05D001415 ORTHO05D001075 3.3e-16 88.6 110 85.5
BcaB06g28285 Brassica carinata HOM05D001415 ORTHO05D001075 7.3e-16 87.4 113 63.7
BcaB06g28286 Brassica carinata HOM05D001415 ORTHO05D001075 7.3e-16 87.4 113 63.7
Thhalv10017949m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 7.3e-16 87.4 118 67.8
THA.LOC104826316 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 1.6e-15 86.3 111 63.1
AT1G07490 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 2.8e-15 85.5 111 71.2
A04p22250 Brassica napus HOM05D008503 ORTHO05D001075 2.8e-15 85.5 113 56.6
BraA04t17777Z Brassica rapa HOM05D008503 ORTHO05D001075 2.8e-15 85.5 113 56.6
Carub.0004s1014 Capsella rubella HOM05D008503 ORTHO05D001075 3.6e-15 85.1 114 71.9
Thhalv10009168m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 4.7e-15 84.7 110 75.5
A08p35630 Brassica napus HOM05D008503 ORTHO05D001075 6.2e-15 84.3 110 73.6
C08p03100 Brassica napus HOM05D008503 ORTHO05D001075 6.2e-15 84.3 110 73.6
BraA08t35469Z Brassica rapa HOM05D008503 ORTHO05D001075 6.2e-15 84.3 110 73.6
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.0e-14 81.6 109 63.3
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.0e-14 81.6 109 63.3
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.0e-14 81.6 109 63.3
Sp4g11940 Schrenkiella parvula HOM05D008503 ORTHO05D001075 4.0e-14 81.6 118 72.9
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 5.2e-14 81.3 107 55.1
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 5.2e-14 81.3 107 64.5
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 9.0e-14 80.5 109 56.0
Sp1g06220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 3.4e-13 78.6 111 82.9
AT2G29125 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 5.8e-13 77.8 116 68.1
BcaC02g08109 Brassica carinata HOM05D001415 ORTHO05D001075 7.6e-13 77.4 113 61.1
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 1.3e-12 76.6 109 64.2
AL4G23680 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 1.7e-12 76.3 116 67.2
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.9e-12 75.5 107 64.5
Duzib170G0931 Durio zibethinus HOM05D001415 ORTHO05D001075 4.9e-12 74.7 107 57.9
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 8.4e-12 73.9 107 61.7
THA.LOC104800681 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 8.4e-12 73.9 107 72.0
CARHR007270 Cardamine hirsuta HOM05D008503 ORTHO05D001075 1.4e-11 73.2 96 46.9
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.9e-11 72.8 107 62.6
THA.LOC104815782 Tarenaya hassleriana HOM05D008503 ORTHO05D001075 2.4e-11 72.4 99 46.5
CARHR122420 Cardamine hirsuta HOM05D008503 ORTHO05D001075 5.4e-11 71.2 32 96.9
Eucgr.B02318 Eucalyptus grandis HOM05D008503 ORTHO05D001075 9.3e-11 70.5 33 87.9
Phvul.011G062700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 9.3e-11 70.5 107 62.6
Atru.chr3.3969 Acer truncatum HOM05D001415 ORTHO05D001075 1.2e-10 70.1 111 55.9
Lj3g0014912 Lotus japonicus HOM05D001415 ORTHO05D001075 2.1e-10 69.3 111 48.6
Sed0008013 Sechium edule HOM05D001415 ORTHO05D001075 2.1e-10 69.3 107 42.1
MELO3C025900.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.7e-10 68.9 111 55.0
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 2.7e-10 68.9 107 56.1
PGR102G0519 Punica granatum HOM05D001415 ORTHO05D001075 2.7e-10 68.9 32 87.5
Cpa.g.sc81.113 Carica papaya HOM05D001415 ORTHO05D001075 3.5e-10 68.6 114 52.6
COL.COLO4_18559 Corchorus olitorius HOM05D001415 ORTHO05D001075 6.0e-10 67.8 109 56.0
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 7.8e-10 67.4 107 50.5
Glyma.12G061000 Glycine max HOM05D008503 ORTHO05D001075 1.0e-09 67.0 111 49.5
Manes.01G170700 Manihot esculenta HOM05D001415 ORTHO05D001075 1.0e-09 67.0 107 56.1
TPR.G23565 Trifolium pratense HOM05D001415 ORTHO05D001075 1.0e-09 67.0 107 46.7
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.0e-09 67.0 107 43.0
ClCG03G001360 Citrullus lanatus HOM05D001415 ORTHO05D001075 1.3e-09 66.6 107 57.9
CsaV3_1G034460 Cucumis sativus L. HOM05D001415 ORTHO05D001075 1.3e-09 66.6 107 61.7
MELO3C020615.2 Cucumis melo HOM05D001415 ORTHO05D001075 1.7e-09 66.2 107 50.5
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.7e-09 66.2 107 41.1
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 2.3e-09 65.9 107 52.3
Prupe.6G072200 Prunus persica HOM05D001415 ORTHO05D001075 3.0e-09 65.5 107 52.3
arahy.Tifrunner.gnm1.ann1.Z87QWF Arachis hypogaea HOM05D008503 ORTHO05D001075 5.1e-09 64.7 110 48.2
Cfa011527 Carpinus fangiana HOM05D001415 ORTHO05D001075 5.1e-09 64.7 32 87.5
Haze_24132 Corylus avellana HOM05D001415 ORTHO05D001075 5.1e-09 64.7 32 87.5
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 6.6e-09 64.3 114 40.4
ClCG02G019980 Citrullus lanatus HOM05D001415 ORTHO05D001075 8.7e-09 63.9 107 75.7
Lalb_Chr03g0026501 Lupinus albus HOM05D001415 ORTHO05D001075 1.1e-08 63.5 107 66.4
CANSAT54G2158 Cannabis sativa HOM05D001415 ORTHO05D001075 1.5e-08 63.2 114 60.5
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 1.5e-08 63.2 32 87.5
Sed0023003 Sechium edule HOM05D001415 ORTHO05D001075 1.5e-08 63.2 32 87.5
CiPaw.13G091000 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.3e-08 62.0 32 84.4
Gohir.A13G227216 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.3e-08 62.0 32 81.2
Gohir.D13G232500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.3e-08 62.0 32 81.2
Gorai.013G263300 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.3e-08 62.0 32 81.2
CiPaw.14G067100 Carya illinoinensis HOM05D001415 ORTHO05D001075 4.3e-08 61.6 107 67.3
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 5.6e-08 61.2 32 81.2
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 5.6e-08 61.2 32 81.2
Glyma.18G076400 Glycine max HOM05D001415 ORTHO05D001075 9.6e-08 60.5 32 81.2
arahy.Tifrunner.gnm1.ann1.K7ANH9 Arachis hypogaea HOM05D001415 ORTHO05D001075 1.3e-07 60.1 32 78.1
PGR119G1246 Punica granatum HOM05D008503 ORTHO05D001075 2.1e-07 59.3 108 61.1
MD03G1087500 Malus domestica HOM05D001415 ORTHO05D001075 3.6e-07 58.5 107 50.5
Glyma.13G338000 Glycine max HOM05D001415 ORTHO05D001075 4.8e-07 58.2 27 88.9
Glyma.15G036400 Glycine max HOM05D001415 ORTHO05D001075 4.8e-07 58.2 27 88.9
Lalb_Chr01g0003531 Lupinus albus HOM05D008503 ORTHO05D001075 4.8e-07 58.2 107 66.4
CARHR285880 Cardamine hirsuta HOM05D008503 ORTHO05D001075 6.2e-07 57.8 32 68.8
Phvul.L007243 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 8.1e-07 57.4 26 88.5
AT5G59510 Arabidopsis thaliana HOM05D008503 ORTHO05D001075 1.1e-06 57.0 32 68.8
Carub.0008s2019 Capsella rubella HOM05D008503 ORTHO05D001075 1.4e-06 56.6 32 65.6
Hma1.2p1_0757F.1_g213305 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 1.4e-06 56.6 31 71.0
Hma1.2p1_0757F.1_g213310 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 1.4e-06 56.6 31 71.0
BcaB08g36251 Brassica carinata HOM05D008503 ORTHO05D001075 1.8e-06 56.2 32 65.6
Sp6g21220 Schrenkiella parvula HOM05D008503 ORTHO05D001075 1.8e-06 56.2 32 65.6
Lj3g0013501 Lotus japonicus HOM05D008503 ORTHO05D001075 2.4e-06 55.8 30 80.0
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 2.4e-06 55.8 31 71.0
CAN.G141.1 Capsicum annuum HOM05D018369 ORTHO05D001075 3.1e-06 55.5 108 53.7
Thhalv10014947m.g Eutrema salsugineum HOM05D008503 ORTHO05D001075 3.1e-06 55.5 32 68.8
Lsat_1_v5_gn_5_169241 Lactuca sativa HOM05D001415 ORTHO05D001075 3.1e-06 55.5 31 74.2
BcaB05g22516 Brassica carinata HOM05D008503 ORTHO05D001075 4.0e-06 55.1 32 65.6
BcaC03g14006 Brassica carinata HOM05D008503 ORTHO05D001075 4.0e-06 55.1 32 65.6
BcaC09g49758 Brassica carinata HOM05D008503 ORTHO05D001075 4.0e-06 55.1 32 65.6
C01p33250 Brassica napus HOM05D008503 ORTHO05D001075 4.0e-06 55.1 32 65.6
C02p12440 Brassica napus HOM05D008503 ORTHO05D001075 4.0e-06 55.1 32 65.6
BolC2t07344H Brassica oleracea HOM05D008503 ORTHO05D001075 4.0e-06 55.1 32 65.6
Solyc06g005610.1 Solanum lycopersicum HOM05D018369 ORTHO05D001075 4.0e-06 55.1 108 58.3
Sopen06g001570 Solanum pennellii HOM05D018369 ORTHO05D001075 4.0e-06 55.1 108 58.3
PGSC0003DMG400002141 Solanum tuberosum HOM05D018369 ORTHO05D001075 4.0e-06 55.1 108 58.3
BcaC04g19763 Brassica carinata HOM05D008503 ORTHO05D001075 5.3e-06 54.7 32 65.6
A10p16720 Brassica napus HOM05D008503 ORTHO05D001075 5.3e-06 54.7 32 65.6
C09p51910 Brassica napus HOM05D008503 ORTHO05D001075 5.3e-06 54.7 32 65.6
BolC9t58054H Brassica oleracea HOM05D008503 ORTHO05D001075 5.3e-06 54.7 32 65.6
BraA10t43753Z Brassica rapa HOM05D008503 ORTHO05D001075 5.3e-06 54.7 32 65.6
A02p07090 Brassica napus HOM05D008503 ORTHO05D001075 6.9e-06 54.3 32 65.6
BraA02t05789Z Brassica rapa HOM05D008503 ORTHO05D001075 6.9e-06 54.3 32 65.6
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 9.0e-06 53.9 32 62.5
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 9.0e-06 53.9 32 62.5


User provided reference genes

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