Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 1.7e-293 1011.9 499 100.0
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 1.6e-288 995.3 499 98.8
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 9.9e-286 986.1 502 97.0
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 2.2e-285 984.9 502 96.6
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 6.0e-283 976.9 505 95.4
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 8.7e-258 893.3 516 86.8
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 1.6e-251 872.5 509 86.1
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 1.0e-250 869.8 497 87.1
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 9.7e-249 863.2 504 85.7
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 1.1e-247 859.8 505 85.1
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 4.5e-230 801.2 497 81.1
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 5.9e-230 800.8 505 79.2
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 3.4e-217 758.4 507 73.0
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 1.2e-211 740.0 507 70.8
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 5.7e-209 731.1 519 68.8
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 9.8e-209 730.3 510 69.2
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 6.3e-208 727.6 518 69.5
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 6.3e-208 727.6 501 71.1
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.8e-207 726.1 516 71.1
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 5.4e-207 724.5 503 70.0
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 9.1e-207 723.8 513 69.4
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 2.0e-206 722.6 495 71.1
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 3.5e-206 721.8 511 69.3
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 4.5e-206 721.5 497 70.2
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 1.1e-204 716.8 515 68.2
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 1.5e-204 716.5 497 70.4
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 4.2e-204 714.9 510 69.2
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 5.5e-204 714.5 488 70.5
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 7.2e-204 714.1 495 70.3
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 9.5e-204 713.8 502 69.5
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 6.1e-203 711.1 531 66.3
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 6.1e-203 711.1 511 68.3
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 1.4e-202 709.9 498 69.9
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 1.8e-202 709.5 535 66.7
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 4.0e-202 708.4 499 69.3
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 8.9e-202 707.2 507 69.8
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 1.2e-201 706.8 493 69.2
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 7.5e-201 704.1 505 68.7
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 1.3e-200 703.4 494 69.8
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 2.8e-200 702.2 494 69.4
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 4.9e-200 701.4 501 68.5
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 4.9e-200 701.4 510 67.8
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 1.1e-199 700.3 507 68.8
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 1.4e-199 699.9 492 69.1
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 2.4e-199 699.1 494 69.0
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 1.6e-198 696.4 496 69.4
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 1.6e-198 696.4 506 67.6
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 3.5e-198 695.3 496 69.2
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 3.9e-197 691.8 513 66.9
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 5.0e-197 691.4 507 67.3
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 8.6e-197 690.6 511 67.5
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 1.5e-196 689.9 495 68.5
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 1.5e-196 689.9 496 69.2
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 1.9e-196 689.5 513 67.6
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 3.3e-196 688.7 494 68.4
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 3.3e-196 688.7 494 68.4
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 4.3e-196 688.3 390 87.2
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 7.3e-196 687.6 507 67.1
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 9.5e-196 687.2 496 69.0
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 1.2e-195 686.8 517 66.9
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 6.8e-194 681.0 510 67.3
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 1.2e-193 680.2 510 67.1
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 1.5e-193 679.9 506 67.2
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 2.6e-193 679.1 506 66.2
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 2.6e-193 679.1 495 68.1
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 5.8e-193 677.9 489 68.5
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 5.8e-193 677.9 526 66.2
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 2.2e-192 676.0 508 66.1
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 3.7e-192 675.2 510 66.5
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 4.9e-192 674.9 503 65.4
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 2.4e-191 672.5 514 66.0
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 7.8e-190 667.5 507 65.1
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 3.0e-189 665.6 492 66.1
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 3.3e-188 662.1 507 64.9
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 5.6e-188 661.4 512 67.6
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 1.6e-187 659.8 496 65.9
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 1.4e-186 656.8 510 63.5
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 4.1e-183 645.2 499 64.9
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 8.6e-181 637.5 521 63.1
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 1.5e-180 636.7 516 62.2
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 5.2e-178 628.2 507 62.5
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 1.2e-177 627.1 509 62.5
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 4.4e-177 625.2 526 61.6
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 1.3e-176 623.6 507 60.4
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 8.3e-176 620.9 515 62.3
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 5.4e-175 618.2 510 62.2
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 3.5e-174 615.5 500 65.2
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 8.6e-173 610.9 507 63.1
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 1.2e-166 590.5 497 62.0
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 7.1e-159 564.7 638 52.0
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 5.1e-157 558.5 410 67.1
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 2.6e-153 546.2 373 70.0
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 1.9e-151 540.0 624 47.4
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 7.4e-148 528.1 496 56.5
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 1.1e-146 524.2 518 55.4
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 4.1e-130 469.2 500 48.0
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 5.3e-130 468.8 326 69.9
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 2.0e-129 466.8 488 49.6
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 1.3e-128 464.2 394 61.9
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 7.0e-106 388.7 502 46.2
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 2.4e-98 363.6 415 48.0
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 5.0e-80 302.8 806 31.4
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 2.0e-76 290.8 191 72.3
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.7e-75 287.7 191 72.3
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 3.7e-75 286.6 187 73.3
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 5.4e-66 256.1 187 64.2
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 3.1e-45 187.2 151 62.3
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 8.7e-40 169.1 98 83.7
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.2e-33 148.7 177 48.0
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 6.9e-21 106.3 59 78.0
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 3.9e-16 90.5 63 65.1
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 5.7e-15 86.7 86 52.3
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 6.5e-11 73.2 46 67.4
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 6.5e-11 73.2 46 67.4
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 8.5e-11 72.8 210 28.6
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.5e-10 71.2 90 44.4
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 2.7e-09 67.8 73 46.6
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 7.9e-09 66.2 73 45.2
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.0e-08 65.9 40 70.0


User provided reference genes

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