Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.7e-125 452.6 222 100.0
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 3.2e-87 325.5 179 90.5
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 2.0e-81 306.2 179 84.4
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 2.0e-81 306.2 179 84.4
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 7.7e-81 304.3 180 83.9
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 7.7e-81 304.3 180 83.9
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.9e-79 299.7 183 82.5
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 5.2e-77 291.6 182 81.9
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.1e-76 290.4 182 81.3
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.3e-75 287.0 182 80.2
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.7e-75 286.6 182 80.2
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 2.0e-73 279.6 184 77.7
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 5.9e-73 278.1 181 78.5
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 2.9e-72 275.8 183 78.7
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 3.6e-70 268.9 182 77.5
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.2e-68 263.8 173 77.5
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 4.4e-68 261.9 187 73.3
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.4e-58 230.3 178 66.9
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 2.4e-58 229.6 166 71.7
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 1.2e-57 227.3 165 70.3
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.4e-53 213.8 172 64.0
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 6.4e-51 204.9 176 60.2
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 6.4e-51 204.9 178 62.9
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-50 203.8 175 60.6
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.3e-48 197.2 182 61.5
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 3.0e-48 196.1 175 58.3
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.5e-47 193.7 175 57.7
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.5e-47 193.7 175 57.7
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.5e-47 193.7 175 57.7
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 5.2e-45 185.3 173 57.2
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 4.1e-42 175.6 161 59.0
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.5e-39 166.4 176 54.0
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.6e-38 163.7 138 64.5
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.6e-38 163.7 159 55.3
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.1e-38 163.3 182 51.6
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 4.0e-37 159.1 186 50.5
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 5.8e-36 155.2 178 51.1
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 7.5e-36 154.8 174 52.9
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 9.8e-36 154.5 170 50.6
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.7e-35 152.5 187 48.1
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.4e-35 151.8 189 46.6
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 6.4e-35 151.8 178 51.1
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 6.4e-35 151.8 178 46.6
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 8.3e-35 151.4 169 50.9
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.3e-35 151.4 187 48.1
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.2e-33 147.5 176 46.6
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.7e-33 146.4 170 50.0
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 3.5e-33 146.0 170 48.2
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 4.6e-33 145.6 170 47.6
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 1.0e-32 144.4 163 49.7
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.0e-32 144.4 175 42.9
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 1.3e-32 144.1 185 43.2
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-32 144.1 176 46.0
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.7e-32 143.7 163 49.7
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 3.0e-32 142.9 175 47.4
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 3.9e-32 142.5 195 41.0
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 5.1e-32 142.1 183 44.3
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 6.6e-32 141.7 164 49.4
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.5e-31 140.6 188 43.1
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.9e-31 140.2 169 47.3
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.5e-31 139.8 176 48.3
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 2.5e-31 139.8 178 46.6
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 4.3e-31 139.0 152 48.0
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 4.3e-31 139.0 160 46.9
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 5.6e-31 138.7 167 48.5
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 9.5e-31 137.9 179 43.6
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 9.5e-31 137.9 183 45.4
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.6e-30 137.1 183 47.0
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.6e-30 137.1 184 42.4
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.6e-30 137.1 157 49.0
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 2.1e-30 136.7 144 57.6
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 2.1e-30 136.7 171 47.4
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.1e-30 136.7 180 47.8
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 2.8e-30 136.3 166 49.4
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.6e-30 136.0 179 41.3
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 3.6e-30 136.0 179 41.9
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.7e-30 135.6 175 44.0
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 4.7e-30 135.6 169 45.6
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.8e-29 133.7 172 46.5
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.3e-29 133.3 182 45.6
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 3.1e-29 132.9 184 44.0
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 5.2e-29 132.1 181 42.5
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 6.8e-29 131.7 184 44.6
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 6.8e-29 131.7 180 46.1
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 8.9e-29 131.3 176 44.9
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 8.9e-29 131.3 189 41.8
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 8.9e-29 131.3 180 45.6
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 1.2e-28 131.0 182 47.3
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 1.2e-28 131.0 170 47.1
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 1.2e-28 131.0 189 40.7
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.2e-28 131.0 153 46.4
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 1.5e-28 130.6 186 39.8
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 2.0e-28 130.2 189 40.2
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.6e-28 129.8 184 43.5
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 2.6e-28 129.8 189 42.9
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 2.6e-28 129.8 179 46.4
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 3.4e-28 129.4 194 41.2
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.4e-28 129.4 189 40.2
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 3.4e-28 129.4 180 44.4
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 4.4e-28 129.0 178 43.8
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 4.4e-28 129.0 190 39.5
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.6e-28 128.3 168 44.6
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 7.6e-28 128.3 195 42.1
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 7.6e-28 128.3 195 42.1
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 9.9e-28 127.9 173 42.2
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.9e-28 127.9 185 43.2
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 9.9e-28 127.9 185 44.3
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 9.9e-28 127.9 173 44.5
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.7e-27 127.1 189 44.4
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 1.7e-27 127.1 170 43.5
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 3.8e-27 125.9 175 45.7
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 3.8e-27 125.9 159 47.2
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 6.4e-27 125.2 162 42.6
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.4e-27 124.8 166 44.0
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 1.1e-26 124.4 187 41.7
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.1e-26 124.4 173 41.0
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.9e-26 123.6 176 44.3
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 4.1e-26 122.5 169 49.1
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 4.1e-26 122.5 177 45.2
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.2e-26 121.3 156 43.6
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 9.2e-26 121.3 171 45.6
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-25 119.8 176 42.6
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.6e-25 119.0 173 43.9
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 4.6e-25 119.0 172 43.0
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 6.0e-25 118.6 172 42.4
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 6.0e-25 118.6 184 41.8
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.3e-24 117.5 164 43.3
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-24 117.1 176 41.5
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.0e-24 116.3 142 46.5
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 3.0e-24 116.3 196 41.3
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 3.0e-24 116.3 155 41.9
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 5.1e-24 115.5 178 41.6
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 6.6e-24 115.2 161 44.1
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 8.6e-24 114.8 168 40.5
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.1e-23 114.4 174 44.3
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-23 113.6 172 41.9
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 3.3e-23 112.8 179 41.3
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 4.3e-23 112.5 194 39.2
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 5.6e-23 112.1 183 39.3
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 9.6e-23 111.3 211 37.4
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.2e-22 110.9 161 42.9
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.6e-22 110.5 175 41.1
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 6.2e-22 108.6 156 39.7
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 6.2e-22 108.6 160 44.4
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 9.9e-20 101.3 148 44.6
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 6.4e-19 98.6 148 43.9
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.4e-19 98.2 137 43.1
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 4.2e-18 95.9 164 38.4
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 9.3e-18 94.7 222 33.8
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 1.2e-17 94.4 144 40.3
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.6e-17 94.0 181 35.4
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.6e-17 92.4 164 40.9
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 7.8e-17 91.7 167 39.5
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.3e-16 90.9 144 43.8
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 4.3e-15 85.9 122 39.3
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 7.3e-15 85.1 168 33.9
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 9.6e-15 84.7 227 31.7
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.8e-14 83.2 138 39.1
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-13 79.7 107 41.1
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 3.1e-13 79.7 195 33.8
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 3.4e-12 76.3 174 33.3
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 3.8e-11 72.8 166 34.3
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 3.8e-11 72.8 201 29.4
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.2e-10 69.3 102 41.2
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.1e-10 68.6 99 42.4
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 7.1e-10 68.6 195 30.3
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.2e-09 67.8 136 32.4
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-08 64.7 105 41.0
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 1.8e-08 63.9 145 29.7
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.1e-07 61.2 133 33.1
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 7.4e-07 58.5 84 42.9
TAR374G1449 Trochodendron aralioides HOM05D007903 ORTHO05D009925 9.6e-07 58.2 173 31.2
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-06 57.8 58 53.4
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.1e-06 57.0 174 28.2
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 3.6e-06 56.2 105 34.3
Sed0004223 Sechium edule HOM05D001131 ORTHO05D000972 3.6e-06 56.2 178 28.1
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 8.1e-06 55.1 171 26.9


User provided reference genes

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