Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC07g42339 Brassica carinata HOM05D006055 ORTHO05D007480 1.9e-192 675.6 336 100.0
BcaC07g42437 Brassica carinata HOM05D006055 ORTHO05D007480 1.2e-178 629.8 340 93.8
AL1G10130 Arabidopsis lyrata HOM05D006055 ORTHO05D007480 7.3e-176 620.5 337 92.3
Carub.0001s0012 Capsella rubella HOM05D006055 ORTHO05D007480 7.3e-176 620.5 337 92.3
Sp1g00170 Schrenkiella parvula HOM05D006055 ORTHO05D007480 3.6e-175 618.2 339 92.0
CARHR000230 Cardamine hirsuta HOM05D006055 ORTHO05D007480 8.1e-175 617.1 338 92.0
Thhalv10008126m.g Eutrema salsugineum HOM05D006055 ORTHO05D007480 1.4e-174 616.3 334 92.5
AT1G02100 Arabidopsis thaliana HOM05D006055 ORTHO05D007480 1.4e-171 606.3 337 91.7
A09p69350 Brassica napus HOM05D006055 ORTHO05D007480 3.3e-168 595.1 361 86.1
BolC8t52925H Brassica oleracea HOM05D006055 ORTHO05D007480 3.3e-168 595.1 361 86.1
BraA09t42280Z Brassica rapa HOM05D006055 ORTHO05D007480 6.2e-167 590.9 359 85.8
Gohir.A08G029400 Gossypium hirsutum HOM05D006055 ORTHO05D007480 6.7e-153 544.3 338 79.3
Thecc.01G394500 Theobroma cacao HOM05D006055 ORTHO05D007480 6.7e-153 544.3 337 79.5
GSVIVG01018274001 Vitis vinifera HOM05D006055 ORTHO05D007480 6.7e-153 544.3 324 81.8
CiPaw.13G026500 Carya illinoinensis HOM05D006055 ORTHO05D007480 8.7e-153 543.9 333 79.0
COL.COLO4_12412 Corchorus olitorius HOM05D006055 ORTHO05D007480 8.7e-153 543.9 334 80.8
Duzib138G0472 Durio zibethinus HOM05D006055 ORTHO05D007480 2.5e-152 542.3 338 79.6
Manes.05G054600 Manihot esculenta HOM05D006055 ORTHO05D007480 1.3e-151 540.0 338 78.7
QL04p030364 Quercus lobata HOM05D006055 ORTHO05D007480 2.4e-150 535.8 334 77.8
CANSAT21G1800 Cannabis sativa HOM05D006055 ORTHO05D007480 5.3e-150 534.6 324 79.6
CANSAT21G1956 Cannabis sativa HOM05D006055 ORTHO05D007480 2.6e-149 532.3 324 79.3
CSS0024076 Camellia sinensis var. sinensis HOM05D006055 ORTHO05D007480 3.4e-149 531.9 335 77.3
MD07G1108400 Malus domestica HOM05D006055 ORTHO05D007480 5.9e-149 531.2 342 77.8
TWI14G0600 Tripterygium wilfordii HOM05D006055 ORTHO05D007480 2.9e-148 528.9 338 77.2
Gorai.004G039000 Gossypium raimondii HOM05D006055 ORTHO05D007480 5.0e-148 528.1 380 70.8
Hma1.2p1_0009F.1_g005960 Hydrangea macrophylla HOM05D006055 ORTHO05D007480 5.0e-148 528.1 339 75.8
FvH4_7g10160 Fragaria vesca HOM05D006055 ORTHO05D007480 6.5e-148 527.7 338 77.2
Ciclev10021096m.g Citrus clementina HOM05D006055 ORTHO05D007480 1.4e-147 526.6 324 78.4
Gohir.D08G040100 Gossypium hirsutum HOM05D006055 ORTHO05D007480 4.2e-147 525.0 379 70.7
Atru.chr5.130 Acer truncatum HOM05D006055 ORTHO05D007480 7.2e-147 524.2 318 81.4
Potri.014G047300 Populus trichocarpa HOM05D006055 ORTHO05D007480 7.2e-147 524.2 337 76.3
Eucgr.D01230 Eucalyptus grandis HOM05D006055 ORTHO05D007480 2.1e-146 522.7 323 77.7
Prupe.2G131200 Prunus persica HOM05D006055 ORTHO05D007480 4.6e-146 521.5 322 78.9
PGR004G2446 Punica granatum HOM05D006055 ORTHO05D007480 6.1e-146 521.2 337 76.9
TAR375G0976 Trochodendron aralioides HOM05D006055 ORTHO05D007480 6.1e-146 521.2 338 76.3
FAN06G3912 Fragaria x ananassa HOM05D006055 ORTHO05D007480 7.9e-146 520.8 346 75.4
Actinidia12146 Actinidia chinensis HOM05D006055 ORTHO05D007480 1.8e-145 519.6 322 78.6
FAN01G2488 Fragaria x ananassa HOM05D006055 ORTHO05D007480 3.0e-145 518.8 346 75.1
RcHm_v2.0_Chr1g0347871 Rosa chinensis HOM05D006055 ORTHO05D007480 3.0e-145 518.8 338 76.6
Lj1g0005705 Lotus japonicus HOM05D006055 ORTHO05D007480 6.7e-145 517.7 324 77.5
PGR144G0002 Punica granatum HOM05D006055 ORTHO05D007480 3.3e-144 515.4 319 79.3
FAN10G0847 Fragaria x ananassa HOM05D006055 ORTHO05D007480 4.3e-144 515.0 346 74.6
Nn1g00856 Nelumbo nucifera HOM05D006055 ORTHO05D007480 4.3e-144 515.0 338 75.4
Cpa.g.sc101.4 Carica papaya HOM05D006055 ORTHO05D007480 5.7e-144 514.6 330 77.0
CAN.G1473.12 Capsicum annuum HOM05D006055 ORTHO05D007480 9.7e-144 513.8 337 75.4
MELO3C022277.2 Cucumis melo HOM05D006055 ORTHO05D007480 1.7e-143 513.1 318 77.0
Sed0027680 Sechium edule HOM05D006055 ORTHO05D007480 1.7e-143 513.1 318 78.0
Lalb_Chr13g0290591 Lupinus albus HOM05D006055 ORTHO05D007480 6.3e-143 511.1 320 78.1
Nitab4.5_0000920g0150 Nicotiana tabacum HOM05D006055 ORTHO05D007480 6.3e-143 511.1 322 77.0
MSTRG.28152 Avicennia marina HOM05D006055 ORTHO05D007480 1.4e-142 510.0 320 79.1
Peaxi162Scf00475g00522 Petunia axillaris HOM05D006055 ORTHO05D007480 1.4e-142 510.0 316 79.1
Solyc01g090280.4 Solanum lycopersicum HOM05D006055 ORTHO05D007480 1.4e-142 510.0 324 76.2
Sopen01g036070 Solanum pennellii HOM05D006055 ORTHO05D007480 1.4e-142 510.0 324 76.2
Nitab4.5_0013736g0020 Nicotiana tabacum HOM05D006055 ORTHO05D007480 2.4e-142 509.2 322 77.3
SGA_v2.0_scaffold43G16538 Striga asiatica HOM05D006055 ORTHO05D007480 4.1e-142 508.4 323 77.4
Psat0s3739g0040 Pisum sativum HOM05D006055 ORTHO05D007480 3.4e-141 505.4 317 76.7
CsaV3_6G008610 Cucumis sativus L. HOM05D006055 ORTHO05D007480 4.5e-141 505.0 318 76.1
Aa31LG1G11510 Aethionema arabicum HOM05D006055 ORTHO05D007480 5.9e-141 504.6 283 89.4
PSO063G7218 Papaver somniferum HOM05D006055 ORTHO05D007480 7.7e-141 504.2 321 76.9
arahy.Tifrunner.gnm1.ann1.JP1X2J Arachis hypogaea HOM05D006055 ORTHO05D007480 1.0e-140 503.8 333 73.9
Ca_08070_v3 Cicer arietinum L. HOM05D006055 ORTHO05D007480 2.9e-140 502.3 321 75.4
FAN10G2268 Fragaria x ananassa HOM05D006055 ORTHO05D007480 2.9e-140 502.3 369 69.9
Glyma.18G252000 Glycine max HOM05D006055 ORTHO05D007480 2.9e-140 502.3 322 75.8
Sabra14G0034300 Salix brachista HOM05D006055 ORTHO05D007480 2.9e-140 502.3 337 73.6
arahy.Tifrunner.gnm1.ann1.C7FV9J Arachis hypogaea HOM05D006055 ORTHO05D007480 3.8e-140 501.9 333 73.6
PSO832G3098 Papaver somniferum HOM05D006055 ORTHO05D007480 5.0e-140 501.5 321 76.6
Medtr7g081715 Medicago truncatula HOM05D006055 ORTHO05D007480 6.5e-140 501.1 325 75.4
Dinv43619 Davidia involucrata HOM05D006055 ORTHO05D007480 4.2e-139 498.4 301 80.7
Glyma.13G187100 Glycine max HOM05D006055 ORTHO05D007480 4.2e-139 498.4 321 75.4
CSS0048269 Camellia sinensis var. sinensis HOM05D006055 ORTHO05D007480 2.1e-138 496.1 336 72.9
ECA240G2571 Erigeron canadensis HOM05D006055 ORTHO05D007480 2.7e-138 495.7 319 76.2
TPR.G14105 Trifolium pratense HOM05D006055 ORTHO05D007480 3.6e-138 495.4 317 75.1
HanXRQChr13g0423211 Helianthus annuus HOM05D006055 ORTHO05D007480 3.9e-137 491.9 322 75.2
Rhsim07G0035700 Rhododendron simsii HOM05D006055 ORTHO05D007480 1.5e-136 490.0 339 73.2
Migut.N01738 Erythranthe guttata HOM05D006055 ORTHO05D007480 2.8e-135 485.7 300 80.3
vmacro13494 Vaccinium macrocarpon HOM05D006055 ORTHO05D007480 8.2e-135 484.2 309 77.0
CDE06G0143 Ceratophyllum demersum HOM05D006055 ORTHO05D007480 2.4e-134 482.6 318 74.8
Os06g0140100 Oryza sativa ssp. japonica HOM05D006055 ORTHO05D007480 9.1e-134 480.7 312 73.1
FAN03G3321 Fragaria x ananassa HOM05D006055 ORTHO05D007480 3.8e-132 475.3 336 70.8
Cc02_g25090 Coffea canephora HOM05D006055 ORTHO05D007480 8.5e-132 474.2 296 79.1
Aqoxy7G00862 Aquilegia oxysepala HOM05D006055 ORTHO05D007480 1.9e-131 473.0 303 75.9
SGA_v2.0_scaffold116G32294 Striga asiatica HOM05D006055 ORTHO05D007480 9.4e-131 470.7 355 67.6
FAN06G2084 Fragaria x ananassa HOM05D006055 ORTHO05D007480 1.2e-130 470.3 372 65.9
Ah.16g103830 Amaranthus hybridus HOM05D006055 ORTHO05D007480 7.4e-128 461.1 317 71.3
Cfa011074 Carpinus fangiana HOM05D006055 ORTHO05D007480 2.2e-127 459.5 285 77.5
Duzib133G1573 Durio zibethinus HOM05D006055 ORTHO05D007480 2.2e-127 459.5 297 77.8
Lsat_1_v5_gn_3_127241 Lactuca sativa HOM05D006055 ORTHO05D007480 1.6e-125 453.4 338 67.5
Oeu011253.1 Olea europaea HOM05D006055 ORTHO05D007480 4.5e-125 451.8 284 79.2
Phvul.011G190400 Phaseolus vulgaris HOM05D006055 ORTHO05D007480 1.1e-123 447.2 328 69.2
SalBow5G1596 Salvia bowleyana HOM05D006055 ORTHO05D007480 3.2e-123 445.7 369 63.7
Hund17088 Selenicereus undatus HOM05D006055 ORTHO05D007480 3.6e-122 442.2 335 68.1
C08p54160 Brassica napus HOM05D006055 ORTHO05D007480 8.0e-122 441.0 261 87.0
Hma1.2p1_0009F.1_g005970 Hydrangea macrophylla HOM05D006055 ORTHO05D007480 3.7e-119 432.2 267 76.8
Sc02g0003100 Simmondsia chinensis HOM05D006055 ORTHO05D007480 6.3e-119 431.4 316 69.6
AUR62013746 Chenopodium quinoa HOM05D006055 ORTHO05D007480 1.1e-118 430.6 282 75.2
Lj9C557T10 Lonicera japonica HOM05D006055 ORTHO05D007480 1.4e-118 430.3 317 70.7
SalBow5G4451 Salvia bowleyana HOM05D006055 ORTHO05D007480 2.7e-117 426.0 371 62.0
MD02G1211800 Malus domestica HOM05D006055 ORTHO05D007480 9.4e-115 417.5 263 79.1
AUR62023405 Chenopodium quinoa HOM05D006055 ORTHO05D007480 4.4e-112 408.7 318 66.7
Glyma.09G242700 Glycine max HOM05D006055 ORTHO05D007480 1.7e-111 406.8 284 71.5
Zm00001eb270250 Zea mays HOM05D006055 ORTHO05D007480 3.5e-109 399.1 290 66.6
EL10Ac1g00759 Beta vulgaris HOM05D006055 ORTHO05D007480 5.9e-109 398.3 280 70.7
ATR0057G026 Amborella trichopoda HOM05D006055 ORTHO05D007480 7.7e-109 397.9 299 66.2
AagrBONN_evm.TU.Sc2ySwM_344.4855 Anthoceros agrestis HOM05D006055 ORTHO05D007480 3.3e-107 392.5 327 59.6
Mapoly0013s0063 Marchantia polymorpha HOM05D006055 ORTHO05D007480 2.8e-106 389.4 315 58.7
MBI04_g33722_MAGBIO Magnolia biondii HOM05D006055 ORTHO05D007480 6.3e-103 378.3 320 62.8
SMO169G0267 Selaginella moellendorffii HOM05D006055 ORTHO05D007480 2.7e-101 372.9 321 57.9
TWI14G1276 Tripterygium wilfordii HOM05D006055 ORTHO05D007480 3.5e-101 372.5 233 81.1
Pp3c6_20710 Physcomitrium patens HOM05D006055 ORTHO05D007480 1.7e-100 370.2 330 55.5
Haze_02842 Corylus avellana HOM05D006055 ORTHO05D007480 7.3e-99 364.8 277 67.9
ClCG06G002510 Citrullus lanatus HOM05D006055 ORTHO05D007480 6.8e-97 358.2 280 66.1
unitig_578.g16712 Utricularia gibba HOM05D006055 ORTHO05D007480 4.1e-94 349.0 240 70.4
CBR_g29813 Chara braunii HOM05D006055 ORTHO05D007480 1.0e-92 344.4 316 53.8
SEGI_37557 Sequoiadendron giganteum HOM05D006055 ORTHO05D007480 3.9e-84 315.8 234 66.2
CDE06G0088 Ceratophyllum demersum HOM05D006055 ORTHO05D007480 1.1e-81 307.8 223 69.5
ECA240G0951 Erigeron canadensis HOM05D006055 ORTHO05D007480 4.4e-72 275.8 224 64.7
Cre04.g229350 Chlamydomonas reinhardtii HOM05D006055 ORTHO05D007480 4.9e-71 272.3 361 41.8
Actinidia32500 Actinidia chinensis HOM05D006055 ORTHO05D007480 5.1e-52 209.1 177 62.1
VMungo1127G0075 Vigna mungo HOM05D006055 ORTHO05D007480 8.7e-52 208.4 146 75.3
MCO09G792 Micromonas commoda HOM05D006055 ORTHO05D007480 1.6e-50 204.1 327 37.6
Gohir.A09G116600 Gossypium hirsutum HOM05D006055 ORTHO05D007480 1.8e-49 200.7 143 71.3
HPP92_022088 Vanilla planifolia HOM05D006055 ORTHO05D007480 5.1e-44 182.6 129 69.0
SHI13615 Sapria himalayana HOM05D006055 ORTHO05D007480 6.2e-42 175.6 112 71.4
PRCOL_00000228 Prasinoderma coloniale HOM05D006055 ORTHO05D007480 2.5e-38 163.7 271 37.3
Gohir.D08G159633 Gossypium hirsutum HOM05D006055 ORTHO05D007480 2.5e-30 137.1 96 70.8
Zm00001eb438620 Zea mays HOM05D006055 ORTHO05D007480 2.1e-21 107.5 97 54.6
MD02G1212000 Malus domestica HOM05D006055 ORTHO05D007480 1.1e-14 85.1 63 65.1
SHI13613 Sapria himalayana HOM05D006055 ORTHO05D007480 1.1e-14 85.1 68 61.8
Phvul.008G046701 Phaseolus vulgaris HOM05D006055 ORTHO05D007480 1.4e-12 78.2 52 75.0


User provided reference genes

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